Wall clock time and date at job start Tue Mar 31 2020 17:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34233 * 116.99686 * 2 1 4 4 O 1.20820 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99537 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46875 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47020 * 179.97438 * 6 5 3 8 8 C 1.36910 * 119.99720 * 90.00016 * 7 6 5 9 9 H 1.07995 * 119.99973 * 229.73002 * 8 7 6 10 10 C 1.39024 * 119.99749 * 49.73895 * 8 7 6 11 11 N 1.31378 * 120.00442 * 15.62791 * 10 8 7 12 12 Si 1.86796 * 119.99790 * 195.63061 * 10 8 7 13 13 H 1.48507 * 109.47062 * 239.99752 * 12 10 8 14 14 H 1.48502 * 109.47398 * 119.99979 * 12 10 8 15 15 H 1.48507 * 109.47199 * 359.97438 * 12 10 8 16 16 C 1.34774 * 120.00217 * 270.00040 * 7 6 5 17 17 O 1.21618 * 120.00031 * 357.54245 * 16 7 6 18 18 C 1.47499 * 119.99802 * 177.54168 * 16 7 6 19 19 C 1.39815 * 120.27401 * 41.58950 * 18 16 7 20 20 C 1.37449 * 120.19514 * 180.18939 * 19 18 16 21 21 C 1.39604 * 120.43799 * 359.97438 * 20 19 18 22 22 C 1.39192 * 119.11593 * 359.64415 * 21 20 19 23 23 C 1.37295 * 120.94165 * 0.28592 * 22 21 20 24 24 C 1.51679 * 107.00410 * 180.98003 * 22 21 20 25 25 C 1.54695 * 101.91786 * 15.15821 * 24 22 21 26 26 H 1.08998 * 110.74645 * 216.37625 * 25 24 22 27 27 C 1.52998 * 110.74433 * 93.21853 * 25 24 22 28 28 O 1.36009 * 129.72860 * 179.06563 * 21 20 19 29 29 H 1.08990 * 109.47174 * 59.99964 * 1 2 3 30 30 H 1.09000 * 109.46734 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46854 * 299.99586 * 1 2 3 32 32 H 1.08996 * 109.47527 * 59.99980 * 5 3 2 33 33 H 1.09000 * 109.47326 * 299.99966 * 5 3 2 34 34 H 1.08998 * 109.46732 * 60.00151 * 6 5 3 35 35 H 1.09000 * 109.47152 * 300.00116 * 6 5 3 36 36 H 0.97002 * 119.99426 * 5.76097 * 11 10 8 37 37 H 1.08001 * 119.90329 * 0.16109 * 19 18 16 38 38 H 1.08005 * 119.78501 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.07607 * 179.97438 * 23 22 21 40 40 H 1.08998 * 110.94186 * 133.31471 * 24 22 21 41 41 H 1.08998 * 110.93882 * 256.96414 * 24 22 21 42 42 H 1.09007 * 109.47462 * 59.99839 * 27 25 24 43 43 H 1.09004 * 109.47497 * 179.97438 * 27 25 24 44 44 H 1.08997 * 109.47760 * 299.99962 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1467 2.8542 -1.1867 9 1 6.9765 2.1831 -1.3518 10 6 5.7727 3.7543 -2.1781 11 7 4.9861 4.7649 -1.8851 12 14 6.3887 3.5267 -3.9268 13 1 7.1714 4.7209 -4.3352 14 1 5.2311 3.3572 -4.8414 15 1 7.2539 2.3216 -3.9940 16 6 6.1360 2.8545 1.1661 17 8 5.5272 2.8682 2.2189 18 6 7.6108 2.8770 1.1667 19 6 8.3041 3.6692 0.2466 20 6 9.6785 3.6859 0.2460 21 6 10.3955 2.9143 1.1622 22 6 9.7000 2.1337 2.0811 23 6 8.3273 2.1104 2.0917 24 6 10.7345 1.4393 2.9461 25 6 12.0132 2.2496 2.6275 26 1 12.8876 1.5992 2.6075 27 6 12.2046 3.3804 3.6403 28 8 11.7395 2.7752 1.3178 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6107 3.2364 0.8889 35 1 3.6100 3.2361 -0.8910 36 1 4.7338 4.9317 -0.9634 37 1 7.7580 4.2695 -0.4661 38 1 10.2072 4.3000 -0.4680 39 1 7.8019 1.4993 2.8106 40 1 10.4760 1.5187 4.0020 41 1 10.8506 0.3960 2.6528 42 1 12.2950 2.9597 4.6418 43 1 13.1099 3.9366 3.3972 44 1 11.3455 4.0502 3.6039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:15 Heat of formation + Delta-G solvation = -143.757705 kcal Electronic energy + Delta-G solvation = -28742.318197 eV Core-core repulsion = 24624.649388 eV Total energy + Delta-G solvation = -4117.668809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22452 -41.66275 -40.78202 -38.15159 -37.67778 -37.11214 -34.11120 -33.90650 -32.72609 -31.65370 -31.02954 -28.80116 -27.69537 -26.71865 -25.79371 -23.77766 -22.89936 -22.47361 -21.88630 -21.31894 -19.62602 -18.76545 -18.15820 -18.01592 -17.71265 -17.56397 -17.00039 -16.94335 -16.81527 -15.93528 -15.57047 -15.36199 -15.12337 -15.07577 -14.61605 -14.57048 -14.27146 -14.07490 -13.97083 -13.77987 -13.55827 -13.48713 -13.31077 -13.15081 -12.96131 -12.88710 -12.68745 -12.23251 -12.09743 -11.88249 -11.86592 -11.79740 -11.75720 -11.67995 -11.55540 -11.10576 -10.57802 -9.90432 -9.77452 -9.08299 -8.63142 -6.27302 0.06088 0.38955 1.04196 1.54131 1.60594 1.62106 1.84116 1.92649 2.28990 2.42594 2.70294 2.84526 3.09836 3.48580 3.63646 3.70886 3.89559 3.92109 3.99257 4.07618 4.17446 4.27101 4.27578 4.28663 4.30121 4.43903 4.46274 4.55873 4.64848 4.68934 4.74382 4.82803 4.87847 4.94410 4.96758 5.14547 5.24023 5.25202 5.28439 5.33389 5.58587 5.60562 5.68309 5.94608 6.21522 6.27440 6.61027 6.96696 7.38067 7.73149 8.55775 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003572 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.272097 B = 7836.216963 C = 9412.923530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.111 4.111 6 C 0.128 3.872 7 N -0.454 5.454 8 C -0.416 4.416 9 H 0.084 0.916 10 C -0.019 4.019 11 N -0.897 5.897 12 Si 1.118 2.882 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.260 1.260 16 C 0.517 3.483 17 O -0.624 6.624 18 C -0.150 4.150 19 C -0.028 4.028 20 C -0.158 4.158 21 C 0.116 3.884 22 C -0.190 4.190 23 C -0.036 4.036 24 C -0.098 4.098 25 C 0.071 3.929 26 H 0.148 0.852 27 C -0.170 4.170 28 O -0.311 6.311 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -9.949 5.019 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.319 3.681 4 O -0.428 6.428 5 C -0.150 4.150 6 C 0.004 3.996 7 N -0.172 5.172 8 C -0.544 4.544 9 H 0.102 0.898 10 C -0.223 4.223 11 N -0.530 5.530 12 Si 0.938 3.062 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.183 1.183 16 C 0.309 3.691 17 O -0.512 6.512 18 C -0.153 4.153 19 C -0.046 4.046 20 C -0.177 4.177 21 C 0.070 3.930 22 C -0.191 4.191 23 C -0.055 4.055 24 C -0.134 4.134 25 C 0.016 3.984 26 H 0.165 0.835 27 C -0.227 4.227 28 O -0.225 6.225 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.599 -9.001 3.844 13.028 hybrid contribution -0.875 -0.076 1.618 1.841 sum 7.724 -9.076 5.461 13.110 Atomic orbital electron populations 1.23607 0.74577 1.05990 1.02505 1.86506 1.25289 1.32116 1.83746 1.23743 0.91959 0.81385 0.71061 1.90647 1.67838 1.37512 1.46807 1.21582 0.87086 0.99775 1.06516 1.20974 0.82759 0.94335 1.01543 1.43490 1.04184 1.64097 1.05453 1.20323 1.18603 1.22248 0.93183 0.89800 1.27754 0.95357 0.90622 1.08530 1.70775 1.33510 1.26649 1.22051 0.82868 0.76433 0.77200 0.69698 1.20447 1.20737 1.18349 1.18985 0.88290 0.78196 0.83621 1.90605 1.70946 1.56783 1.32818 1.19620 0.92305 1.03448 0.99967 1.21241 0.92945 0.95808 0.94644 1.20341 0.92572 1.02523 1.02233 1.19836 0.83717 0.93893 0.95549 1.20859 0.93780 1.02341 1.02113 1.20244 0.92324 0.96848 0.96109 1.21959 0.90595 1.00178 1.00711 1.23792 0.99338 0.95192 0.80033 0.83479 1.22271 1.02403 0.98325 0.99677 1.86823 1.18805 1.81304 1.35570 0.92024 0.84270 0.92107 0.85987 0.87615 0.93482 0.91031 0.92913 0.84990 0.83876 0.85573 0.87357 0.87595 0.88195 0.90701 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.04 10.57 -51.45 -0.54 -11.58 16 3 C 0.47 17.89 7.96 71.23 0.57 18.45 16 4 O -0.54 -23.52 15.73 21.98 0.35 -23.17 16 5 C -0.11 -4.35 6.14 29.85 0.18 -4.17 16 6 C 0.13 6.16 3.77 86.38 0.33 6.49 16 7 N -0.45 -22.48 2.11 -639.18 -1.35 -23.83 16 8 C -0.42 -20.24 6.04 84.09 0.51 -19.73 16 9 H 0.08 4.03 7.28 -2.91 -0.02 4.01 16 10 C -0.02 -0.93 4.76 84.95 0.40 -0.52 16 11 N -0.90 -49.36 12.55 21.68 0.27 -49.09 16 12 Si 1.12 43.84 29.95 68.60 2.05 45.89 16 13 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 15 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 16 C 0.52 25.80 7.29 86.69 0.63 26.43 16 17 O -0.62 -33.74 16.51 -4.09 -0.07 -33.81 16 18 C -0.15 -6.53 5.31 -20.06 -0.11 -6.64 16 19 C -0.03 -1.14 8.06 22.47 0.18 -0.96 16 20 C -0.16 -5.51 10.05 22.41 0.23 -5.29 16 21 C 0.12 3.69 6.91 22.83 0.16 3.85 16 22 C -0.19 -5.80 6.25 -19.54 -0.12 -5.93 16 23 C -0.04 -1.33 9.65 22.44 0.22 -1.11 16 24 C -0.10 -1.94 6.65 30.74 0.20 -1.74 16 25 C 0.07 1.29 4.30 31.17 0.13 1.43 16 26 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 27 C -0.17 -2.73 9.51 71.98 0.68 -2.04 16 28 O -0.31 -8.43 10.82 -93.65 -1.01 -9.44 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.05 2.45 7.34 -2.39 -0.02 2.43 16 35 H 0.07 3.76 6.08 -2.39 -0.01 3.74 16 36 H 0.26 15.19 7.03 -92.71 -0.65 14.54 16 37 H 0.13 6.01 6.19 -2.91 -0.02 6.00 16 38 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.11 1.76 7.92 -2.39 -0.02 1.75 16 41 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 0.86 8.08 -2.39 -0.02 0.85 16 Total: -1.00 -69.15 372.05 6.23 -62.92 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 1.14 Total: 31.79 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.39 Total: 10.31 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.08 Total: -72.92 kcal Atomic # 8 Polarization: -76.72 SS G_CDS: -1.28 Total: -78.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.05 Total: 45.89 kcal Total: -69.15 6.23 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.836 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds