Wall clock time and date at job start Tue Mar 31 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 C 1.50694 * 109.46832 * 120.00197 * 2 1 3 5 5 O 1.21286 * 119.99693 * 120.00153 * 4 2 1 6 6 N 1.34778 * 120.00273 * 299.99665 * 4 2 1 7 7 C 1.46498 * 119.99974 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00256 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.46865 * 89.99988 * 8 6 4 10 10 H 1.07994 * 120.00264 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99523 * 180.02562 * 9 8 6 12 12 N 1.31525 * 119.99480 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00484 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47270 * 89.99939 * 13 11 9 15 15 H 1.48503 * 109.47493 * 210.00107 * 13 11 9 16 16 H 1.48503 * 109.46925 * 329.99639 * 13 11 9 17 17 N 1.46498 * 109.46943 * 239.99951 * 2 1 3 18 18 C 1.35234 * 125.75960 * 325.28975 * 17 2 1 19 19 C 1.36479 * 106.04646 * 180.15203 * 18 17 2 20 20 C 1.48463 * 126.90367 * 179.85431 * 19 18 17 21 21 C 1.39797 * 120.49967 * 184.69059 * 20 19 18 22 22 C 1.38311 * 118.34749 * 179.77205 * 21 20 19 23 23 C 1.38641 * 119.25069 * 0.50564 * 22 21 20 24 24 F 1.35104 * 119.51643 * 179.75048 * 23 22 21 25 25 N 1.32041 * 120.96069 * 359.47826 * 23 22 21 26 26 C 1.31818 * 121.81145 * 0.25605 * 25 23 22 27 27 N 1.34494 * 106.18856 * 359.58740 * 19 18 17 28 28 N 1.28614 * 108.79418 * 0.26468 * 27 19 18 29 29 H 1.09003 * 109.47011 * 299.99843 * 1 2 3 30 30 H 1.09001 * 109.47069 * 59.99812 * 1 2 3 31 31 H 1.09001 * 109.47507 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 89.99547 * 7 6 4 33 33 H 1.08995 * 109.47207 * 209.99977 * 7 6 4 34 34 H 1.09002 * 109.46892 * 329.99669 * 7 6 4 35 35 H 1.08992 * 109.47409 * 210.00196 * 8 6 4 36 36 H 1.09006 * 109.47205 * 330.00521 * 8 6 4 37 37 H 0.96998 * 119.99595 * 180.02562 * 12 11 9 38 38 H 1.08005 * 126.98175 * 0.02562 * 18 17 2 39 39 H 1.07998 * 120.82972 * 0.02562 * 21 20 19 40 40 H 1.07996 * 120.37557 * 180.26792 * 22 21 20 41 41 H 1.08006 * 119.68136 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1945 -0.9410 3.6507 9 6 3.5223 -0.3581 4.0611 10 1 3.9589 0.4468 3.4885 11 6 4.1797 -0.8525 5.1677 12 7 5.3382 -0.3435 5.5261 13 14 3.4249 -2.2452 6.1577 14 1 3.8850 -3.5470 5.6112 15 1 3.8453 -2.1279 7.5772 16 1 1.9444 -2.1677 6.0719 17 7 2.0183 -0.6906 -1.1962 18 6 1.4312 -1.7547 -1.7894 19 6 2.2181 -2.0724 -2.8583 20 6 2.0005 -3.1743 -3.8292 21 6 2.9471 -3.4419 -4.8225 22 6 2.7015 -4.4820 -5.7005 23 6 1.5297 -5.2123 -5.5749 24 9 1.2821 -6.2261 -6.4329 25 7 0.6549 -4.9348 -4.6257 26 6 0.8509 -3.9563 -3.7645 27 7 3.2270 -1.1830 -2.8587 28 7 3.0750 -0.3835 -1.8628 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1837 0.6426 2.6225 33 1 1.1219 1.4663 3.5085 34 1 1.0273 1.5996 1.7361 35 1 1.4765 -0.8154 4.4611 36 1 2.3153 -2.0023 3.4334 37 1 5.8009 -0.6915 6.3044 38 1 0.5248 -2.2533 -1.4790 39 1 3.8497 -2.8539 -4.8998 40 1 3.4127 -4.7201 -6.4777 41 1 0.1125 -3.7596 -3.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881117675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:50 Heat of formation + Delta-G solvation = 78.452909 kcal Electronic energy + Delta-G solvation = -27599.945497 eV Core-core repulsion = 23433.037661 eV Total energy + Delta-G solvation = -4166.907836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.26504 -43.38512 -40.25842 -39.67621 -35.53891 -35.39197 -33.57237 -32.69584 -32.48381 -31.01070 -29.60685 -28.47454 -26.70345 -25.32845 -24.31902 -24.25889 -23.01375 -21.69825 -21.25759 -19.31348 -18.39087 -17.72315 -17.31545 -17.21350 -17.09246 -16.33084 -16.19347 -15.79653 -15.51965 -15.12462 -14.79254 -14.62754 -14.11888 -13.99408 -13.86855 -13.63407 -13.45206 -13.40042 -12.93559 -12.67058 -12.62223 -12.45259 -12.13169 -11.99568 -11.71827 -11.58315 -11.14333 -11.05278 -10.95044 -10.66290 -10.32001 -10.28983 -10.05022 -9.90414 -9.69703 -9.36257 -8.70963 -8.57144 -8.05239 -6.20233 -4.21144 0.32484 0.77871 1.53045 2.07042 2.45951 2.79077 3.19330 3.24324 3.24730 3.27492 3.41440 3.42922 3.86549 4.15517 4.21587 4.28055 4.38194 4.39833 4.50623 4.53204 4.60273 4.87073 5.04040 5.10240 5.13876 5.14969 5.24205 5.27043 5.40442 5.51303 5.55105 5.59006 5.83969 5.91350 5.95472 6.24150 6.32795 6.47282 6.70581 6.98093 7.26881 7.44098 7.81360 8.28228 8.39769 8.49929 8.82021 9.37994 10.92872 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002574 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.868965 B =10875.695544 C =11453.980318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 H 0.139 0.861 4 C 0.499 3.501 5 O -0.518 6.518 6 N -0.585 5.585 7 C 0.072 3.928 8 C 0.217 3.783 9 C -0.536 4.536 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.266 1.266 17 N -0.261 5.261 18 C -0.011 4.011 19 C 0.006 3.994 20 C -0.051 4.051 21 C -0.024 4.024 22 C -0.188 4.188 23 C 0.301 3.699 24 F -0.114 7.114 25 N -0.508 5.508 26 C 0.149 3.851 27 N -0.255 5.255 28 N -0.062 5.062 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.191 0.809 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -0.994 -17.416 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.157 0.843 4 C 0.282 3.718 5 O -0.394 6.394 6 N -0.317 5.317 7 C -0.071 4.071 8 C 0.097 3.903 9 C -0.574 4.574 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.530 5.530 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.190 1.190 17 N -0.052 5.052 18 C -0.163 4.163 19 C -0.131 4.131 20 C -0.056 4.056 21 C -0.050 4.050 22 C -0.209 4.209 23 C 0.148 3.852 24 F -0.093 7.093 25 N -0.222 5.222 26 C -0.010 4.010 27 N -0.122 5.122 28 N -0.041 5.041 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.208 0.792 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.342 -1.077 -17.352 21.914 hybrid contribution -0.364 -0.990 0.755 1.297 sum -13.705 -2.068 -16.596 21.623 Atomic orbital electron populations 1.22455 0.89889 1.04984 1.05806 1.21725 0.97160 0.98359 0.81357 0.84328 1.19992 0.81947 0.85668 0.84219 1.90787 1.36673 1.26268 1.85634 1.47761 1.49542 1.28314 1.06106 1.21973 0.93730 0.87717 1.03725 1.19767 0.95707 0.93645 0.81169 1.21262 1.03086 1.20706 1.12381 0.90664 1.24861 0.94604 0.96426 0.97003 1.69893 1.14621 1.42055 1.26460 0.86852 0.79921 0.83227 0.79673 1.19859 1.20885 1.19044 1.46828 1.17014 1.21396 1.19984 1.23338 1.02926 0.93681 0.96350 1.19862 0.95717 0.99409 0.98067 1.18653 0.96272 0.95175 0.95479 1.21607 0.98637 0.94105 0.90662 1.21812 0.97940 0.97901 1.03225 1.18226 0.91493 0.86908 0.88608 1.91627 1.94448 1.56846 1.66338 1.66990 1.31861 1.18812 1.04531 1.22465 0.95067 0.88449 0.94996 1.75226 1.20095 1.03376 1.13474 1.78297 1.03125 1.20954 1.01773 0.87504 0.90119 0.90574 0.92595 0.89714 0.91870 0.94635 0.94415 0.92366 0.79193 0.82666 0.83044 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.46 37.16 0.31 -0.94 16 2 C 0.12 1.48 2.84 -69.08 -0.20 1.28 16 3 H 0.14 1.51 7.40 -51.93 -0.38 1.12 16 4 C 0.50 8.92 7.14 -10.99 -0.08 8.85 16 5 O -0.52 -12.02 16.00 5.55 0.09 -11.93 16 6 N -0.59 -10.36 2.86 -182.96 -0.52 -10.88 16 7 C 0.07 0.84 8.80 59.85 0.53 1.37 16 8 C 0.22 4.87 4.23 -5.19 -0.02 4.85 16 9 C -0.54 -14.69 9.94 -34.44 -0.34 -15.03 16 10 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 11 C 0.07 2.10 5.47 -17.81 -0.10 2.00 16 12 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 13 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 17 N -0.26 -3.71 2.74 -55.61 -0.15 -3.86 16 18 C -0.01 -0.13 10.07 -16.69 -0.17 -0.30 16 19 C 0.01 0.08 6.99 -83.12 -0.58 -0.50 16 20 C -0.05 -0.57 5.89 -104.75 -0.62 -1.18 16 21 C -0.02 -0.24 9.84 -38.97 -0.38 -0.62 16 22 C -0.19 -1.66 10.07 -39.41 -0.40 -2.06 16 23 C 0.30 3.25 8.40 -17.31 -0.15 3.10 16 24 F -0.11 -1.24 17.29 2.25 0.04 -1.20 16 25 N -0.51 -5.85 10.36 -13.32 -0.14 -5.99 16 26 C 0.15 1.47 10.75 -17.21 -0.18 1.29 16 27 N -0.25 -4.07 12.25 33.06 0.40 -3.66 16 28 N -0.06 -1.05 13.14 60.35 0.79 -0.26 16 29 H 0.11 0.63 4.53 -51.93 -0.24 0.39 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.52 7.16 -51.93 -0.37 0.15 16 32 H 0.06 0.47 6.95 -51.93 -0.36 0.11 16 33 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.06 0.55 6.01 -51.93 -0.31 0.24 16 35 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.19 1.49 6.68 -52.48 -0.35 1.14 16 39 H 0.16 1.43 7.98 -52.49 -0.42 1.01 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.17 1.16 7.16 -52.48 -0.38 0.78 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -37.33 354.21 -4.81 -42.14 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.39 Total: -1.71 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.37 Total: 2.09 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 1.16 Total: -50.78 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.33 -4.81 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881117675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.591 kcal (2) G-P(sol) polarization free energy of solvation -37.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds