Wall clock time and date at job start Tue Mar 31 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47168 * 2 1 4 4 C 1.50694 * 109.46832 * 120.00197 * 2 1 3 5 5 O 1.21286 * 119.99693 * 120.00153 * 4 2 1 6 6 N 1.34778 * 120.00273 * 299.99665 * 4 2 1 7 7 C 1.46498 * 119.99974 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00256 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.46865 * 89.99988 * 8 6 4 10 10 H 1.07994 * 120.00264 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99523 * 180.02562 * 9 8 6 12 12 N 1.31525 * 119.99480 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00484 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47270 * 89.99939 * 13 11 9 15 15 H 1.48503 * 109.47493 * 210.00107 * 13 11 9 16 16 H 1.48503 * 109.46925 * 329.99639 * 13 11 9 17 17 N 1.46498 * 109.46943 * 239.99951 * 2 1 3 18 18 C 1.35234 * 125.75960 * 325.28975 * 17 2 1 19 19 C 1.36479 * 106.04646 * 180.15203 * 18 17 2 20 20 C 1.48463 * 126.90367 * 179.85431 * 19 18 17 21 21 C 1.39797 * 120.49967 * 184.69059 * 20 19 18 22 22 C 1.38311 * 118.34749 * 179.77205 * 21 20 19 23 23 C 1.38641 * 119.25069 * 0.50564 * 22 21 20 24 24 F 1.35104 * 119.51643 * 179.75048 * 23 22 21 25 25 N 1.32041 * 120.96069 * 359.47826 * 23 22 21 26 26 C 1.31818 * 121.81145 * 0.25605 * 25 23 22 27 27 N 1.34494 * 106.18856 * 359.58740 * 19 18 17 28 28 N 1.28614 * 108.79418 * 0.26468 * 27 19 18 29 29 H 1.09003 * 109.47011 * 299.99843 * 1 2 3 30 30 H 1.09001 * 109.47069 * 59.99812 * 1 2 3 31 31 H 1.09001 * 109.47507 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 89.99547 * 7 6 4 33 33 H 1.08995 * 109.47207 * 209.99977 * 7 6 4 34 34 H 1.09002 * 109.46892 * 329.99669 * 7 6 4 35 35 H 1.08992 * 109.47409 * 210.00196 * 8 6 4 36 36 H 1.09006 * 109.47205 * 330.00521 * 8 6 4 37 37 H 0.96998 * 119.99595 * 180.02562 * 12 11 9 38 38 H 1.08005 * 126.98175 * 0.02562 * 18 17 2 39 39 H 1.07998 * 120.82972 * 0.02562 * 21 20 19 40 40 H 1.07996 * 120.37557 * 180.26792 * 22 21 20 41 41 H 1.08006 * 119.68136 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1945 -0.9410 3.6507 9 6 3.5223 -0.3581 4.0611 10 1 3.9589 0.4468 3.4885 11 6 4.1797 -0.8525 5.1677 12 7 5.3382 -0.3435 5.5261 13 14 3.4249 -2.2452 6.1577 14 1 3.8850 -3.5470 5.6112 15 1 3.8453 -2.1279 7.5772 16 1 1.9444 -2.1677 6.0719 17 7 2.0183 -0.6906 -1.1962 18 6 1.4312 -1.7547 -1.7894 19 6 2.2181 -2.0724 -2.8583 20 6 2.0005 -3.1743 -3.8292 21 6 2.9471 -3.4419 -4.8225 22 6 2.7015 -4.4820 -5.7005 23 6 1.5297 -5.2123 -5.5749 24 9 1.2821 -6.2261 -6.4329 25 7 0.6549 -4.9348 -4.6257 26 6 0.8509 -3.9563 -3.7645 27 7 3.2270 -1.1830 -2.8587 28 7 3.0750 -0.3835 -1.8628 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1837 0.6426 2.6225 33 1 1.1219 1.4663 3.5085 34 1 1.0273 1.5996 1.7361 35 1 1.4765 -0.8154 4.4611 36 1 2.3153 -2.0023 3.4334 37 1 5.8009 -0.6915 6.3044 38 1 0.5248 -2.2533 -1.4790 39 1 3.8497 -2.8539 -4.8998 40 1 3.4127 -4.7201 -6.4777 41 1 0.1125 -3.7596 -3.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881117675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:49 Heat of formation + Delta-G solvation = 50.340962 kcal Electronic energy + Delta-G solvation = -27601.164522 eV Core-core repulsion = 23433.037661 eV Total energy + Delta-G solvation = -4168.126862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.08109 -44.41234 -41.15302 -40.90568 -36.89755 -36.58490 -34.80261 -34.34592 -33.29237 -32.14087 -30.49698 -30.09825 -27.81415 -26.27699 -25.30908 -25.17448 -24.46714 -22.64569 -22.47204 -20.56101 -19.20780 -19.17298 -18.69280 -18.45484 -18.06251 -17.29177 -17.15859 -16.93575 -16.72139 -16.55922 -15.96240 -15.52486 -15.35740 -15.00260 -14.86508 -14.70946 -14.44256 -14.28895 -14.17751 -13.80556 -13.73628 -13.57641 -13.47536 -13.03605 -12.89612 -12.69255 -12.63608 -12.41887 -12.11185 -12.05931 -11.90687 -11.77446 -11.26911 -10.86569 -10.84310 -10.76005 -10.71666 -9.53788 -9.46346 -8.37024 -6.43347 -0.48546 0.03264 0.48645 1.13067 1.31300 1.35972 1.43615 1.47290 1.48747 2.16455 2.28391 2.47652 2.62372 2.97259 2.97854 3.26062 3.40424 3.43917 3.59219 3.68164 3.75927 3.86086 4.08377 4.27179 4.31745 4.49023 4.53052 4.61538 4.64888 4.69919 4.74216 4.78370 4.88619 4.92482 4.95951 5.10991 5.17761 5.39988 5.41346 5.48484 5.49498 6.16564 6.47019 6.49447 6.59509 7.07739 7.23323 7.33681 8.80027 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002574 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.868965 B =10875.695544 C =11453.980318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 H 0.151 0.849 4 C 0.490 3.510 5 O -0.585 6.585 6 N -0.590 5.590 7 C 0.060 3.940 8 C 0.224 3.776 9 C -0.539 4.539 10 H 0.026 0.974 11 C 0.008 3.992 12 N -0.947 5.947 13 Si 0.949 3.051 14 H -0.281 1.281 15 H -0.277 1.277 16 H -0.228 1.228 17 N -0.265 5.265 18 C -0.001 4.001 19 C -0.001 4.001 20 C -0.064 4.064 21 C -0.030 4.030 22 C -0.176 4.176 23 C 0.288 3.712 24 F -0.117 7.117 25 N -0.529 5.529 26 C 0.156 3.844 27 N -0.281 5.281 28 N -0.111 5.111 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.234 0.766 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 -1.448 -17.673 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.168 0.832 4 C 0.276 3.724 5 O -0.465 6.465 6 N -0.321 5.321 7 C -0.081 4.081 8 C 0.102 3.898 9 C -0.578 4.578 10 H 0.044 0.956 11 C -0.190 4.190 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.207 1.207 15 H -0.203 1.203 16 H -0.150 1.150 17 N -0.057 5.057 18 C -0.153 4.153 19 C -0.139 4.139 20 C -0.069 4.069 21 C -0.056 4.056 22 C -0.196 4.196 23 C 0.135 3.865 24 F -0.097 7.097 25 N -0.243 5.243 26 C -0.003 4.003 27 N -0.147 5.147 28 N -0.089 5.089 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.175 0.825 40 H 0.196 0.804 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -17.201 -1.462 -17.628 24.673 hybrid contribution 0.875 -0.806 0.757 1.410 sum -16.326 -2.268 -16.871 23.587 Atomic orbital electron populations 1.22583 0.85167 1.06472 1.08123 1.21907 1.00429 0.97428 0.78000 0.83151 1.20963 0.80685 0.85018 0.85699 1.90748 1.39548 1.29371 1.86795 1.47805 1.49776 1.29606 1.04890 1.22418 0.95111 0.85995 1.04569 1.19415 0.93770 0.92737 0.83878 1.21569 1.05334 1.19322 1.11580 0.95564 1.25915 0.95029 0.99487 0.98572 1.70066 1.16729 1.44333 1.27553 0.85703 0.81161 0.78387 0.77599 1.20697 1.20259 1.15031 1.47043 1.16537 1.22024 1.20073 1.24048 1.03591 0.92530 0.95158 1.20253 0.95254 0.99424 0.98927 1.18731 0.97273 0.95196 0.95669 1.21742 0.98672 0.94417 0.90749 1.21987 0.97659 0.96738 1.03249 1.18476 0.92109 0.87155 0.88712 1.91615 1.94524 1.57056 1.66459 1.67023 1.32508 1.19545 1.05195 1.22860 0.95079 0.87362 0.94963 1.75145 1.21417 1.04255 1.13888 1.78236 1.04980 1.22571 1.03100 0.85510 0.87347 0.89554 0.87877 0.91092 0.88752 0.91914 0.96241 0.92298 0.74990 0.82512 0.80374 0.78421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.46 71.98 0.61 -0.99 16 2 C 0.13 2.85 2.84 44.24 0.13 2.98 16 3 H 0.15 2.96 7.40 -2.38 -0.02 2.95 16 4 C 0.49 17.16 7.14 87.66 0.63 17.79 16 5 O -0.58 -27.67 16.00 -3.05 -0.05 -27.72 16 6 N -0.59 -20.03 2.86 -851.14 -2.43 -22.46 16 7 C 0.06 1.20 8.80 127.77 1.12 2.32 16 8 C 0.22 9.88 4.23 85.64 0.36 10.25 16 9 C -0.54 -30.47 9.94 25.60 0.25 -30.21 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 11 C 0.01 0.46 5.47 84.65 0.46 0.92 16 12 N -0.95 -59.34 13.96 21.45 0.30 -59.05 16 13 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.23 -8.79 6.54 99.48 0.65 -8.13 16 17 N -0.27 -7.22 2.74 -329.86 -0.90 -8.12 16 18 C 0.00 -0.03 10.07 83.76 0.84 0.82 16 19 C 0.00 -0.02 6.99 41.05 0.29 0.27 16 20 C -0.06 -1.34 5.89 -19.95 -0.12 -1.46 16 21 C -0.03 -0.56 9.84 22.66 0.22 -0.34 16 22 C -0.18 -2.87 10.07 22.38 0.23 -2.65 16 23 C 0.29 5.85 8.40 84.76 0.71 6.56 16 24 F -0.12 -2.44 17.29 44.97 0.78 -1.66 16 25 N -0.53 -11.31 10.36 -196.06 -2.03 -13.34 16 26 C 0.16 2.76 10.75 84.92 0.91 3.67 16 27 N -0.28 -9.10 12.25 -49.31 -0.60 -9.71 16 28 N -0.11 -3.78 13.14 37.02 0.49 -3.29 16 29 H 0.13 0.73 4.53 -2.39 -0.01 0.71 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.71 7.16 -2.39 -0.02 0.70 16 32 H 0.10 1.15 6.95 -2.39 -0.02 1.13 16 33 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.09 1.29 6.01 -2.39 -0.01 1.28 16 35 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 36 H 0.02 0.94 6.85 -2.38 -0.02 0.92 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.23 2.69 6.68 -2.91 -0.02 2.67 16 39 H 0.16 2.89 7.98 -2.91 -0.02 2.86 16 40 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.20 2.05 7.16 -2.91 -0.02 2.03 16 Total: -1.00 -89.51 354.21 5.12 -84.39 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.04 Total: 6.37 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.65 Total: 9.93 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -5.18 Total: -115.96 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -89.51 5.12 -84.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881117675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.731 kcal (2) G-P(sol) polarization free energy of solvation -89.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds