Wall clock time and date at job start Tue Mar 31 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46432 * 2 1 4 4 C 1.50694 * 109.47126 * 240.00018 * 2 1 3 5 5 O 1.21283 * 120.00090 * 253.91872 * 4 2 1 6 6 N 1.34785 * 119.99937 * 73.92277 * 4 2 1 7 7 C 1.46494 * 119.99742 * 3.70052 * 6 4 2 8 8 C 1.46500 * 119.99548 * 183.69860 * 6 4 2 9 9 C 1.50697 * 109.47140 * 90.00380 * 8 6 4 10 10 H 1.08004 * 119.99888 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31509 * 120.00154 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47484 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46990 * 119.99940 * 13 11 9 16 16 H 1.48503 * 109.46973 * 239.99795 * 13 11 9 17 17 N 1.46501 * 109.46766 * 119.99860 * 2 1 3 18 18 C 1.35234 * 125.75640 * 35.02155 * 17 2 1 19 19 C 1.36485 * 106.03966 * 179.97438 * 18 17 2 20 20 C 1.48453 * 126.90610 * 180.26649 * 19 18 17 21 21 C 1.39609 * 120.54298 * 179.43732 * 20 19 18 22 22 C 1.38508 * 118.34023 * 179.73530 * 21 20 19 23 23 C 1.38217 * 119.33940 * 0.53016 * 22 21 20 24 24 N 1.31948 * 121.05609 * 359.72395 * 23 22 21 25 25 C 1.31925 * 121.80909 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.72911 * 179.97438 * 25 24 23 27 27 N 1.34498 * 106.19281 * 0.02562 * 19 18 17 28 28 N 1.28611 * 108.78927 * 359.97438 * 27 19 18 29 29 H 1.08997 * 109.47158 * 295.77259 * 1 2 3 30 30 H 1.09002 * 109.46833 * 55.77685 * 1 2 3 31 31 H 1.08999 * 109.46713 * 175.77437 * 1 2 3 32 32 H 1.08994 * 109.47534 * 84.69840 * 7 6 4 33 33 H 1.09008 * 109.46739 * 204.69633 * 7 6 4 34 34 H 1.08998 * 109.47141 * 324.69061 * 7 6 4 35 35 H 1.09004 * 109.46631 * 209.99664 * 8 6 4 36 36 H 1.09000 * 109.47478 * 329.99727 * 8 6 4 37 37 H 0.96998 * 120.00665 * 179.97438 * 12 11 9 38 38 H 1.08004 * 126.98251 * 359.97438 * 18 17 2 39 39 H 1.07996 * 120.83366 * 359.97000 * 21 20 19 40 40 H 1.08001 * 120.32896 * 180.25813 * 22 21 20 41 41 H 1.08002 * 119.47518 * 179.70914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5088 -1.8218 -1.1370 6 7 1.9522 -0.1106 -2.4348 7 6 1.4521 1.2625 -2.5374 8 6 2.3654 -0.8319 -3.6412 9 6 1.1841 -1.5728 -4.2127 10 1 0.2219 -1.5127 -3.7257 11 6 1.3317 -2.3273 -5.3572 12 7 2.5031 -2.4000 -5.9505 13 14 -0.1325 -3.2463 -6.0652 14 1 -1.3272 -3.0023 -5.2176 15 1 -0.3986 -2.7656 -7.4449 16 1 0.1642 -4.7011 -6.0965 17 7 2.0183 -0.6906 1.1962 18 6 1.4343 -1.7583 1.7860 19 6 2.2184 -2.0726 2.8580 20 6 2.0041 -3.1779 3.8256 21 6 2.9022 -3.3874 4.8738 22 6 2.6551 -4.4285 5.7532 23 6 1.5436 -5.2275 5.5617 24 7 0.7137 -5.0102 4.5591 25 6 0.9044 -4.0284 3.6989 26 9 0.0281 -3.8444 2.6872 27 7 3.2272 -1.1831 2.8585 28 7 3.0751 -0.3836 1.8627 29 1 -0.3633 0.4468 0.9254 30 1 -0.3633 0.5780 -0.8498 31 1 -0.3633 -1.0249 -0.0757 32 1 2.2686 1.9612 -2.3550 33 1 1.0482 1.4284 -3.5362 34 1 0.6673 1.4196 -1.7974 35 1 2.7402 -0.1219 -4.3784 36 1 3.1522 -1.5425 -3.3881 37 1 2.6071 -2.9311 -6.7554 38 1 0.5310 -2.2603 1.4724 39 1 3.7660 -2.7512 4.9981 40 1 3.3266 -4.6168 6.5779 41 1 1.3514 -6.0428 6.2434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881118793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:59 Heat of formation + Delta-G solvation = 73.552365 kcal Electronic energy + Delta-G solvation = -28186.252367 eV Core-core repulsion = 24019.132028 eV Total energy + Delta-G solvation = -4167.120340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.25342 -43.28940 -40.17052 -39.48765 -35.46817 -35.14264 -33.67310 -32.73408 -32.00767 -30.84636 -29.80853 -27.93479 -26.38536 -25.17009 -24.61035 -23.86505 -23.15025 -21.78648 -21.28150 -19.19515 -18.28239 -17.60882 -17.23804 -17.12991 -16.66847 -16.32573 -15.97304 -15.73097 -15.39637 -15.17761 -14.86946 -14.55295 -14.13234 -13.84629 -13.68562 -13.43724 -13.34167 -13.18325 -12.75461 -12.52971 -12.33037 -12.26521 -12.04128 -11.84192 -11.65967 -11.32847 -11.09908 -11.01859 -10.96463 -10.71056 -10.29336 -10.20377 -10.01367 -9.76876 -9.69882 -9.22436 -8.55476 -8.54534 -7.92312 -6.16243 -4.22428 0.39504 0.81202 1.61101 2.15735 2.53571 2.92428 3.22574 3.23785 3.30998 3.33358 3.45998 3.59792 3.93972 4.19425 4.31858 4.37641 4.47050 4.54026 4.59307 4.61038 4.77983 4.99503 5.13025 5.18609 5.19767 5.28052 5.35814 5.43238 5.58789 5.64659 5.68655 5.76618 5.85157 5.97493 6.04122 6.29381 6.46004 6.81659 7.23271 7.30954 7.33619 7.78097 8.05375 8.07722 8.43301 8.59278 8.82678 9.43288 10.92013 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.003127 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.581896 B = 8952.358553 C =10017.798106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 H 0.134 0.866 4 C 0.498 3.502 5 O -0.522 6.522 6 N -0.589 5.589 7 C 0.068 3.932 8 C 0.245 3.755 9 C -0.532 4.532 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.264 5.264 18 C 0.004 3.996 19 C -0.005 4.005 20 C -0.060 4.060 21 C -0.027 4.027 22 C -0.180 4.180 23 C 0.131 3.869 24 N -0.507 5.507 25 C 0.317 3.683 26 F -0.106 7.106 27 N -0.251 5.251 28 N -0.073 5.073 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.197 0.803 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 3.900 20.679 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.151 0.849 4 C 0.281 3.719 5 O -0.397 6.397 6 N -0.321 5.321 7 C -0.075 4.075 8 C 0.126 3.874 9 C -0.571 4.571 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.055 5.055 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.065 4.065 21 C -0.053 4.053 22 C -0.200 4.200 23 C -0.026 4.026 24 N -0.221 5.221 25 C 0.162 3.838 26 F -0.085 7.085 27 N -0.119 5.119 28 N -0.052 5.052 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.214 0.786 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.191 3.723 20.421 21.002 hybrid contribution -1.160 -0.609 -1.004 1.651 sum -4.352 3.114 19.417 20.141 Atomic orbital electron populations 1.22253 0.89691 1.05445 1.04850 1.21793 0.97524 0.97909 0.81451 0.84858 1.19951 0.80954 0.86839 0.84186 1.90771 1.44650 1.19110 1.85214 1.48101 1.62339 1.14206 1.07481 1.21946 0.98499 0.83158 1.03932 1.19422 0.96595 0.92138 0.79216 1.21408 0.95879 1.29977 1.09812 0.92270 1.24946 0.96174 0.96242 0.96660 1.69932 1.22746 1.40498 1.19823 0.86422 0.82365 0.79774 0.78748 1.19728 1.20846 1.20773 1.46875 1.17116 1.21412 1.20116 1.23820 1.02933 0.92588 0.95443 1.19766 0.96338 0.99719 0.98330 1.18331 0.96098 0.95181 0.96929 1.21629 0.97407 0.95736 0.90545 1.22163 0.99719 0.96675 1.01404 1.22592 0.89420 0.97863 0.92756 1.67027 1.32044 1.18392 1.04667 1.18006 0.86843 0.92379 0.86557 1.91566 1.67720 1.93569 1.55626 1.75160 1.19953 1.03297 1.13495 1.78185 1.03589 1.21266 1.02195 0.90224 0.87937 0.90162 0.93040 0.89729 0.92078 0.94435 0.93632 0.92574 0.78591 0.82825 0.83445 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.47 37.16 0.31 -1.43 16 2 C 0.12 1.68 2.81 -69.08 -0.19 1.48 16 3 H 0.13 1.51 7.48 -51.93 -0.39 1.12 16 4 C 0.50 9.76 6.97 -10.98 -0.08 9.68 16 5 O -0.52 -12.93 15.88 5.55 0.09 -12.84 16 6 N -0.59 -11.49 2.86 -182.96 -0.52 -12.01 16 7 C 0.07 0.92 9.86 59.84 0.59 1.51 16 8 C 0.24 6.12 5.16 -5.20 -0.03 6.09 16 9 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 13 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 N -0.26 -4.23 2.84 -55.61 -0.16 -4.39 16 18 C 0.00 0.06 9.57 -16.69 -0.16 -0.10 16 19 C 0.00 -0.08 7.00 -83.12 -0.58 -0.66 16 20 C -0.06 -0.78 5.90 -104.67 -0.62 -1.40 16 21 C -0.03 -0.27 9.84 -38.97 -0.38 -0.66 16 22 C -0.18 -1.35 10.10 -39.49 -0.40 -1.75 16 23 C 0.13 1.11 11.17 -17.51 -0.20 0.91 16 24 N -0.51 -6.21 10.36 -13.32 -0.14 -6.35 16 25 C 0.32 4.24 8.40 -17.01 -0.14 4.10 16 26 F -0.11 -1.48 14.41 2.25 0.03 -1.45 16 27 N -0.25 -4.23 12.24 33.06 0.40 -3.83 16 28 N -0.07 -1.27 13.14 60.35 0.79 -0.48 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.94 5.80 -51.93 -0.30 0.63 16 31 H 0.08 0.94 7.39 -51.93 -0.38 0.56 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.17 8.03 -51.92 -0.42 0.76 16 34 H 0.06 0.61 4.56 -51.93 -0.24 0.37 16 35 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.20 2.72 5.55 -52.48 -0.29 2.43 16 39 H 0.15 1.42 7.98 -52.49 -0.42 1.00 16 40 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -35.99 356.72 -5.18 -41.16 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.47 Total: -0.95 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.29 Total: 4.74 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 1.12 Total: -52.22 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.99 -5.18 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881118793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.716 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds