Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46432 * 2 1 4 4 C 1.50694 * 109.47126 * 240.00018 * 2 1 3 5 5 O 1.21283 * 120.00090 * 253.91872 * 4 2 1 6 6 N 1.34785 * 119.99937 * 73.92277 * 4 2 1 7 7 C 1.46494 * 119.99742 * 3.70052 * 6 4 2 8 8 C 1.46500 * 119.99548 * 183.69860 * 6 4 2 9 9 C 1.50697 * 109.47140 * 90.00380 * 8 6 4 10 10 H 1.08004 * 119.99888 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31509 * 120.00154 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47484 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46990 * 119.99940 * 13 11 9 16 16 H 1.48503 * 109.46973 * 239.99795 * 13 11 9 17 17 N 1.46501 * 109.46766 * 119.99860 * 2 1 3 18 18 C 1.35234 * 125.75640 * 35.02155 * 17 2 1 19 19 C 1.36485 * 106.03966 * 179.97438 * 18 17 2 20 20 C 1.48453 * 126.90610 * 180.26649 * 19 18 17 21 21 C 1.39609 * 120.54298 * 179.43732 * 20 19 18 22 22 C 1.38508 * 118.34023 * 179.73530 * 21 20 19 23 23 C 1.38217 * 119.33940 * 0.53016 * 22 21 20 24 24 N 1.31948 * 121.05609 * 359.72395 * 23 22 21 25 25 C 1.31925 * 121.80909 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.72911 * 179.97438 * 25 24 23 27 27 N 1.34498 * 106.19281 * 0.02562 * 19 18 17 28 28 N 1.28611 * 108.78927 * 359.97438 * 27 19 18 29 29 H 1.08997 * 109.47158 * 295.77259 * 1 2 3 30 30 H 1.09002 * 109.46833 * 55.77685 * 1 2 3 31 31 H 1.08999 * 109.46713 * 175.77437 * 1 2 3 32 32 H 1.08994 * 109.47534 * 84.69840 * 7 6 4 33 33 H 1.09008 * 109.46739 * 204.69633 * 7 6 4 34 34 H 1.08998 * 109.47141 * 324.69061 * 7 6 4 35 35 H 1.09004 * 109.46631 * 209.99664 * 8 6 4 36 36 H 1.09000 * 109.47478 * 329.99727 * 8 6 4 37 37 H 0.96998 * 120.00665 * 179.97438 * 12 11 9 38 38 H 1.08004 * 126.98251 * 359.97438 * 18 17 2 39 39 H 1.07996 * 120.83366 * 359.97000 * 21 20 19 40 40 H 1.08001 * 120.32896 * 180.25813 * 22 21 20 41 41 H 1.08002 * 119.47518 * 179.70914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5088 -1.8218 -1.1370 6 7 1.9522 -0.1106 -2.4348 7 6 1.4521 1.2625 -2.5374 8 6 2.3654 -0.8319 -3.6412 9 6 1.1841 -1.5728 -4.2127 10 1 0.2219 -1.5127 -3.7257 11 6 1.3317 -2.3273 -5.3572 12 7 2.5031 -2.4000 -5.9505 13 14 -0.1325 -3.2463 -6.0652 14 1 -1.3272 -3.0023 -5.2176 15 1 -0.3986 -2.7656 -7.4449 16 1 0.1642 -4.7011 -6.0965 17 7 2.0183 -0.6906 1.1962 18 6 1.4343 -1.7583 1.7860 19 6 2.2184 -2.0726 2.8580 20 6 2.0041 -3.1779 3.8256 21 6 2.9022 -3.3874 4.8738 22 6 2.6551 -4.4285 5.7532 23 6 1.5436 -5.2275 5.5617 24 7 0.7137 -5.0102 4.5591 25 6 0.9044 -4.0284 3.6989 26 9 0.0281 -3.8444 2.6872 27 7 3.2272 -1.1831 2.8585 28 7 3.0751 -0.3836 1.8627 29 1 -0.3633 0.4468 0.9254 30 1 -0.3633 0.5780 -0.8498 31 1 -0.3633 -1.0249 -0.0757 32 1 2.2686 1.9612 -2.3550 33 1 1.0482 1.4284 -3.5362 34 1 0.6673 1.4196 -1.7974 35 1 2.7402 -0.1219 -4.3784 36 1 3.1522 -1.5425 -3.3881 37 1 2.6071 -2.9311 -6.7554 38 1 0.5310 -2.2603 1.4724 39 1 3.7660 -2.7512 4.9981 40 1 3.3266 -4.6168 6.5779 41 1 1.3514 -6.0428 6.2434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881118793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = 47.561960 kcal Electronic energy + Delta-G solvation = -28187.379396 eV Core-core repulsion = 24019.132028 eV Total energy + Delta-G solvation = -4168.247368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.23100 -44.48496 -41.10454 -40.87907 -36.89996 -36.61384 -34.86516 -34.51248 -32.84527 -32.07173 -30.80093 -29.72693 -27.69080 -26.40347 -25.53097 -25.28148 -24.40995 -22.89346 -22.57272 -20.58833 -19.16666 -18.75523 -18.72148 -18.53080 -18.12838 -17.36745 -17.16954 -16.92879 -16.75765 -16.35608 -16.32609 -15.96220 -15.34469 -14.95226 -14.67969 -14.55588 -14.32274 -14.26335 -14.20544 -13.68236 -13.60581 -13.43445 -13.35977 -13.12037 -13.06154 -12.83877 -12.70960 -12.53250 -12.25962 -12.25510 -12.10456 -11.71910 -11.35387 -10.82717 -10.75492 -10.69296 -10.55593 -9.59354 -9.55956 -8.27211 -6.42083 -0.47145 0.01958 0.38263 1.01388 1.35081 1.37601 1.44139 1.45421 1.50622 2.13494 2.36393 2.39144 2.63444 2.90384 3.03817 3.24021 3.31533 3.42517 3.52990 3.60007 3.75261 3.93716 4.13100 4.17960 4.33705 4.38420 4.49258 4.55381 4.65565 4.69676 4.75131 4.84499 4.88742 4.97099 5.08442 5.12319 5.15346 5.31582 5.46181 5.54912 5.72438 5.97791 6.48076 6.56078 6.67465 7.07862 7.20538 7.30217 8.80761 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.003127 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.581896 B = 8952.358553 C =10017.798106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.169 0.831 4 C 0.490 3.510 5 O -0.587 6.587 6 N -0.593 5.593 7 C 0.059 3.941 8 C 0.258 3.742 9 C -0.541 4.541 10 H 0.062 0.938 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.269 1.269 16 H -0.287 1.287 17 N -0.266 5.266 18 C -0.008 4.008 19 C -0.005 4.005 20 C -0.085 4.085 21 C -0.031 4.031 22 C -0.156 4.156 23 C 0.136 3.864 24 N -0.531 5.531 25 C 0.295 3.705 26 F -0.120 7.120 27 N -0.266 5.266 28 N -0.096 5.096 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.031 0.969 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.206 0.794 39 H 0.161 0.839 40 H 0.193 0.807 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 4.379 22.918 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.186 0.814 4 C 0.275 3.725 5 O -0.468 6.468 6 N -0.323 5.323 7 C -0.082 4.082 8 C 0.137 3.863 9 C -0.579 4.579 10 H 0.080 0.920 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.185 1.185 15 H -0.195 1.195 16 H -0.213 1.213 17 N -0.058 5.058 18 C -0.160 4.160 19 C -0.142 4.142 20 C -0.091 4.091 21 C -0.058 4.058 22 C -0.176 4.176 23 C -0.021 4.021 24 N -0.246 5.246 25 C 0.141 3.859 26 F -0.099 7.099 27 N -0.133 5.133 28 N -0.075 5.075 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.049 0.951 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.222 0.778 39 H 0.178 0.822 40 H 0.210 0.790 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.857 4.277 22.671 23.577 hybrid contribution -0.563 -0.826 -1.571 1.862 sum -5.419 3.450 21.100 22.057 Atomic orbital electron populations 1.22355 0.86619 1.05340 1.07458 1.21956 0.99610 0.98069 0.78007 0.81421 1.20899 0.79663 0.86288 0.85605 1.90734 1.47434 1.22198 1.86409 1.48057 1.62095 1.16162 1.06036 1.22337 1.00677 0.79933 1.05285 1.18861 0.94845 0.91411 0.81154 1.21716 0.96345 1.30067 1.09817 0.91951 1.25884 0.98990 0.97168 0.97217 1.70059 1.24950 1.41503 1.20415 0.85359 0.79083 0.77784 0.78556 1.18479 1.19455 1.21274 1.47035 1.16813 1.21658 1.20265 1.24089 1.03520 0.92743 0.95671 1.20200 0.95577 0.99764 0.98666 1.18433 0.97398 0.95260 0.98014 1.21897 0.96977 0.96696 0.90186 1.22626 0.99421 0.94377 1.01133 1.23426 0.88594 0.98356 0.91717 1.67098 1.33554 1.18303 1.05635 1.18154 0.87187 0.93390 0.87123 1.91513 1.68192 1.93785 1.56381 1.75094 1.20571 1.03832 1.13808 1.78099 1.04331 1.22151 1.02911 0.86983 0.85838 0.91644 0.90439 0.90130 0.87804 0.95111 0.98844 0.92413 0.77761 0.82158 0.78961 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.47 71.98 0.61 -2.38 16 2 C 0.13 3.46 2.81 44.25 0.12 3.58 16 3 H 0.17 3.31 7.48 -2.39 -0.02 3.29 16 4 C 0.49 19.53 6.97 87.65 0.61 20.14 16 5 O -0.59 -30.73 15.88 -3.04 -0.05 -30.78 16 6 N -0.59 -23.28 2.86 -851.14 -2.43 -25.72 16 7 C 0.06 1.45 9.86 127.77 1.26 2.71 16 8 C 0.26 13.49 5.16 85.63 0.44 13.93 16 9 C -0.54 -29.86 9.39 25.60 0.24 -29.62 16 10 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 13 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 N -0.27 -8.52 2.84 -329.86 -0.94 -9.46 16 18 C -0.01 -0.27 9.57 83.76 0.80 0.54 16 19 C -0.01 -0.16 7.00 41.05 0.29 0.13 16 20 C -0.09 -2.24 5.90 -19.90 -0.12 -2.36 16 21 C -0.03 -0.59 9.84 22.67 0.22 -0.37 16 22 C -0.16 -1.80 10.10 22.33 0.23 -1.57 16 23 C 0.14 1.87 11.17 84.67 0.95 2.82 16 24 N -0.53 -12.42 10.36 -196.06 -2.03 -14.45 16 25 C 0.30 7.98 8.40 85.01 0.71 8.69 16 26 F -0.12 -3.49 14.41 44.97 0.65 -2.84 16 27 N -0.27 -9.10 12.24 -49.31 -0.60 -9.70 16 28 N -0.10 -3.37 13.14 37.02 0.49 -2.89 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.77 5.80 -2.39 -0.01 1.76 16 31 H 0.06 1.46 7.39 -2.39 -0.02 1.44 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.09 8.03 -2.38 -0.02 2.07 16 34 H 0.10 1.66 4.56 -2.39 -0.01 1.65 16 35 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 36 H -0.01 -0.41 7.37 -2.39 -0.02 -0.43 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.21 5.91 5.55 -2.91 -0.02 5.90 16 39 H 0.16 2.75 7.98 -2.91 -0.02 2.73 16 40 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -85.41 356.72 5.31 -80.10 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.09 Total: 8.22 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.83 Total: 17.06 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.23 Total: -117.61 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.65 Total: -2.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -85.41 5.31 -80.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881118793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.665 kcal (2) G-P(sol) polarization free energy of solvation -85.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds