Wall clock time and date at job start Tue Mar 31 2020 18:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34746 * 117.00005 * 2 1 4 4 O 1.21512 * 120.00058 * 359.97438 * 3 2 1 5 5 C 1.47409 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.39793 * 120.25224 * 0.02562 * 5 3 2 7 7 C 1.37762 * 120.13834 * 180.02562 * 6 5 3 8 8 C 1.38747 * 120.21859 * 359.33297 * 7 6 5 9 9 C 1.37622 * 120.05295 * 359.97438 * 8 7 6 10 10 C 1.38694 * 120.74112 * 1.34297 * 9 8 7 11 11 O 1.35361 * 120.31382 * 175.13038 * 10 9 8 12 12 C 1.43187 * 115.83629 * 290.06861 * 11 10 9 13 13 C 1.52170 * 110.16921 * 89.38034 * 12 11 10 14 14 N 1.46387 * 111.21137 * 298.69147 * 13 12 11 15 15 C 1.34771 * 119.79766 * 243.59342 * 14 13 12 16 16 O 1.21280 * 120.00204 * 175.51075 * 15 14 13 17 17 C 1.50708 * 120.00118 * 355.50666 * 15 14 13 18 18 H 1.08997 * 109.47267 * 35.63397 * 17 15 14 19 19 C 1.53009 * 109.46722 * 275.64183 * 17 15 14 20 20 C 1.50699 * 109.47341 * 155.64180 * 17 15 14 21 21 H 1.07998 * 119.99812 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00149 * 179.97438 * 20 17 15 23 23 N 1.31519 * 119.99714 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 120.00065 * 179.97438 * 22 20 17 25 25 H 1.48493 * 109.47156 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46884 * 120.00520 * 24 22 20 27 27 H 1.48503 * 109.46820 * 240.00223 * 24 22 20 28 28 C 1.46653 * 120.40397 * 63.56854 * 14 13 12 29 29 H 1.08995 * 109.47271 * 299.99796 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.00444 * 1 2 3 31 31 H 1.09008 * 109.47025 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.92971 * 359.74886 * 6 5 3 33 33 H 1.07999 * 119.89294 * 179.34213 * 7 6 5 34 34 H 1.08006 * 119.97229 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.36831 * 329.15875 * 12 11 10 36 36 H 1.08997 * 109.22291 * 209.51989 * 12 11 10 37 37 H 1.09003 * 109.13130 * 178.24717 * 13 12 11 38 38 H 1.08995 * 109.13421 * 59.13850 * 13 12 11 39 39 H 1.09003 * 109.47126 * 304.86346 * 19 17 15 40 40 H 1.08991 * 109.47230 * 64.86976 * 19 17 15 41 41 H 1.09004 * 109.46766 * 184.86933 * 19 17 15 42 42 H 0.97005 * 119.99541 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.58577 * 160.03825 * 28 14 13 44 44 H 1.09000 * 109.58758 * 39.60852 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.3023 0.1087 0.0006 7 6 5.6779 0.1836 0.0016 8 6 6.3100 1.4186 -0.0112 9 6 5.5637 2.5748 -0.0257 10 6 4.1779 2.5244 0.0004 11 8 3.4542 3.6652 0.0851 12 6 3.5196 4.3539 1.3388 13 6 4.6762 5.3428 1.3344 14 7 5.9572 4.6587 1.1496 15 6 6.8844 4.6976 2.1269 16 8 7.9131 4.0656 2.0123 17 6 6.6428 5.5265 3.3622 18 1 5.5845 5.4935 3.6207 19 6 7.0573 6.9747 3.0936 20 6 7.4564 4.9747 4.5044 21 1 8.0851 4.1100 4.3513 22 6 7.3981 5.5737 5.7448 23 7 6.6321 6.6264 5.9313 24 14 8.4061 4.8893 7.1609 25 1 9.1781 3.7098 6.6942 26 1 9.3434 5.9319 7.6505 27 1 7.4982 4.4827 8.2635 28 6 6.2375 3.9309 -0.0924 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8151 -0.8551 0.0043 33 1 6.2662 -0.7221 0.0124 34 1 7.3887 1.4726 -0.0099 35 1 3.6655 3.6309 2.1413 36 1 2.5855 4.8912 1.5022 37 1 4.6913 5.8790 2.2833 38 1 4.5325 6.0571 0.5238 39 1 8.0920 6.9990 2.7516 40 1 6.4110 7.4013 2.3267 41 1 6.9643 7.5553 4.0114 42 1 6.5908 7.0476 6.8042 43 1 7.3137 3.7991 -0.2037 44 1 5.8462 4.4920 -0.9410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884754682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:42 Heat of formation + Delta-G solvation = -116.493197 kcal Electronic energy + Delta-G solvation = -29589.891308 eV Core-core repulsion = 25473.404777 eV Total energy + Delta-G solvation = -4116.486531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04522 -40.00128 -38.70532 -37.48781 -36.39612 -34.96875 -33.94220 -32.38397 -31.09342 -30.39126 -28.61579 -27.90636 -26.32923 -25.23317 -24.29316 -23.27720 -22.07225 -21.36099 -20.78485 -18.77912 -17.92579 -17.56650 -17.07156 -16.57310 -16.45402 -16.15317 -15.73666 -15.25706 -15.13427 -14.88569 -14.85368 -14.45581 -13.93271 -13.67373 -13.40428 -13.24823 -13.00058 -12.78543 -12.57587 -12.35524 -12.07581 -11.90535 -11.87477 -11.49515 -11.45042 -11.09889 -10.97891 -10.91644 -10.70501 -10.68186 -10.62765 -10.33346 -10.05301 -9.99688 -9.16562 -9.02085 -8.77053 -8.57367 -8.33882 -8.24818 -6.08980 -4.12724 0.56422 1.06491 2.49236 2.55476 3.25299 3.28435 3.36377 3.43328 3.56112 3.63192 3.98660 4.41906 4.56408 4.65090 4.76993 4.91826 5.00042 5.08018 5.13000 5.16389 5.21564 5.24048 5.27452 5.31695 5.42937 5.52398 5.66090 5.79722 5.82093 5.96754 6.02031 6.09369 6.16140 6.29522 6.40748 6.53970 6.58546 6.79642 6.88802 6.97916 7.34502 7.43592 7.70800 7.71234 7.88427 8.03344 8.29560 8.93503 9.09766 9.52573 10.98097 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003428 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.459406 B = 8165.784027 C = 8269.956473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.507 3.493 4 O -0.485 6.485 5 C -0.154 4.154 6 C -0.052 4.052 7 C -0.144 4.144 8 C -0.046 4.046 9 C -0.141 4.141 10 C 0.177 3.823 11 O -0.311 6.311 12 C 0.055 3.945 13 C 0.075 3.925 14 N -0.624 5.624 15 C 0.524 3.476 16 O -0.540 6.540 17 C 0.030 3.970 18 H 0.048 0.952 19 C -0.132 4.132 20 C -0.500 4.500 21 H 0.070 0.930 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.284 1.284 28 C 0.156 3.844 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.014 0.986 41 H 0.097 0.903 42 H 0.261 0.739 43 H 0.098 0.902 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -10.266 -13.318 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.351 3.649 4 O -0.372 6.372 5 C -0.156 4.156 6 C -0.071 4.071 7 C -0.162 4.162 8 C -0.064 4.064 9 C -0.143 4.143 10 C 0.131 3.869 11 O -0.226 6.226 12 C -0.020 4.020 13 C -0.049 4.049 14 N -0.359 5.359 15 C 0.316 3.684 16 O -0.415 6.415 17 C 0.009 3.991 18 H 0.066 0.934 19 C -0.190 4.190 20 C -0.538 4.538 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.210 1.210 28 C 0.033 3.967 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.033 0.967 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.489 -10.055 -13.346 19.216 hybrid contribution 0.252 -0.357 0.900 1.000 sum -9.237 -10.412 -12.446 18.672 Atomic orbital electron populations 1.23236 0.76180 1.03516 1.02622 1.86536 1.23392 1.32979 1.84859 1.20960 0.88821 0.81512 0.73564 1.90880 1.66349 1.35574 1.44379 1.19307 0.89531 0.93872 1.12879 1.21323 0.93830 0.97264 0.94675 1.21186 0.94197 0.98132 1.02665 1.21245 1.00765 0.91134 0.93301 1.20933 0.92596 0.97672 1.03111 1.18558 0.89020 0.85225 0.94095 1.86090 1.67211 1.34262 1.35069 1.23226 0.99797 0.95115 0.83836 1.22129 0.82807 0.94911 1.05049 1.48218 1.16754 1.54012 1.16955 1.22135 0.81793 0.80430 0.84074 1.90517 1.27646 1.44275 1.79105 1.18929 0.99019 0.92275 0.88832 0.93449 1.21726 0.98120 0.97520 1.01665 1.21112 1.26014 1.13902 0.92768 0.91189 1.24933 0.95556 0.94943 0.98700 1.69864 1.39115 1.21016 1.23372 0.86409 0.80006 0.79176 0.81761 1.19583 1.20928 1.21014 1.20421 1.00963 0.87526 0.87805 0.91849 0.91924 0.88151 0.84258 0.84779 0.84459 0.91870 0.87124 0.86574 0.90811 0.94948 0.96682 0.88494 0.92902 0.88390 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.23 9.82 -40.62 -0.40 -4.63 16 3 C 0.51 7.29 7.89 34.46 0.27 7.56 16 4 O -0.48 -8.04 14.98 -26.56 -0.40 -8.44 16 5 C -0.15 -2.19 5.89 -104.83 -0.62 -2.81 16 6 C -0.05 -0.61 9.60 -39.17 -0.38 -0.99 16 7 C -0.14 -1.60 10.04 -39.57 -0.40 -2.00 16 8 C -0.05 -0.60 9.70 -39.62 -0.38 -0.99 16 9 C -0.14 -2.12 5.48 -104.24 -0.57 -2.69 16 10 C 0.18 2.74 5.62 -38.67 -0.22 2.52 16 11 O -0.31 -4.96 8.01 -39.53 -0.32 -5.28 16 12 C 0.06 0.82 6.67 36.73 0.24 1.06 16 13 C 0.07 1.15 5.99 -4.53 -0.03 1.12 16 14 N -0.62 -11.19 2.69 -175.01 -0.47 -11.66 16 15 C 0.52 11.73 6.77 -10.98 -0.07 11.66 16 16 O -0.54 -13.56 15.26 5.56 0.08 -13.48 16 17 C 0.03 0.74 1.79 -92.92 -0.17 0.57 16 18 H 0.05 1.15 6.20 -51.93 -0.32 0.83 16 19 C -0.13 -3.04 8.91 37.16 0.33 -2.71 16 20 C -0.50 -13.87 8.33 -34.44 -0.29 -14.16 16 21 H 0.07 2.06 7.02 -52.49 -0.37 1.69 16 22 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 23 N -0.89 -24.50 11.29 55.43 0.63 -23.88 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.16 2.42 5.64 -4.68 -0.03 2.39 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.14 1.28 7.61 -52.49 -0.40 0.88 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.68 8.00 -52.48 -0.42 1.26 16 35 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 36 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.12 1.89 4.94 -51.93 -0.26 1.63 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.01 0.28 7.76 -51.93 -0.40 -0.12 16 41 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.10 1.56 7.01 -51.93 -0.36 1.19 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -32.99 362.80 -7.52 -40.51 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.77 Total: 1.51 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.32 Total: 3.46 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.15 Total: -35.54 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.03 Total: -31.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.99 -7.52 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884754682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.986 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds