Wall clock time and date at job start Tue Mar 31 2020 18:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34746 * 117.00005 * 2 1 4 4 O 1.21512 * 120.00058 * 359.97438 * 3 2 1 5 5 C 1.47409 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.39793 * 120.25224 * 0.02562 * 5 3 2 7 7 C 1.37762 * 120.13834 * 180.02562 * 6 5 3 8 8 C 1.38747 * 120.21859 * 359.33297 * 7 6 5 9 9 C 1.37622 * 120.05295 * 359.97438 * 8 7 6 10 10 C 1.38694 * 120.74112 * 1.34297 * 9 8 7 11 11 O 1.35361 * 120.31382 * 175.13038 * 10 9 8 12 12 C 1.43187 * 115.83629 * 290.06861 * 11 10 9 13 13 C 1.52170 * 110.16921 * 89.38034 * 12 11 10 14 14 N 1.46387 * 111.21137 * 298.69147 * 13 12 11 15 15 C 1.34771 * 119.79766 * 243.59342 * 14 13 12 16 16 O 1.21280 * 120.00204 * 175.51075 * 15 14 13 17 17 C 1.50708 * 120.00118 * 355.50666 * 15 14 13 18 18 H 1.08997 * 109.47267 * 35.63397 * 17 15 14 19 19 C 1.53009 * 109.46722 * 275.64183 * 17 15 14 20 20 C 1.50699 * 109.47341 * 155.64180 * 17 15 14 21 21 H 1.07998 * 119.99812 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00149 * 179.97438 * 20 17 15 23 23 N 1.31519 * 119.99714 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 120.00065 * 179.97438 * 22 20 17 25 25 H 1.48493 * 109.47156 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46884 * 120.00520 * 24 22 20 27 27 H 1.48503 * 109.46820 * 240.00223 * 24 22 20 28 28 C 1.46653 * 120.40397 * 63.56854 * 14 13 12 29 29 H 1.08995 * 109.47271 * 299.99796 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.00444 * 1 2 3 31 31 H 1.09008 * 109.47025 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.92971 * 359.74886 * 6 5 3 33 33 H 1.07999 * 119.89294 * 179.34213 * 7 6 5 34 34 H 1.08006 * 119.97229 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.36831 * 329.15875 * 12 11 10 36 36 H 1.08997 * 109.22291 * 209.51989 * 12 11 10 37 37 H 1.09003 * 109.13130 * 178.24717 * 13 12 11 38 38 H 1.08995 * 109.13421 * 59.13850 * 13 12 11 39 39 H 1.09003 * 109.47126 * 304.86346 * 19 17 15 40 40 H 1.08991 * 109.47230 * 64.86976 * 19 17 15 41 41 H 1.09004 * 109.46766 * 184.86933 * 19 17 15 42 42 H 0.97005 * 119.99541 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.58577 * 160.03825 * 28 14 13 44 44 H 1.09000 * 109.58758 * 39.60852 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.3023 0.1087 0.0006 7 6 5.6779 0.1836 0.0016 8 6 6.3100 1.4186 -0.0112 9 6 5.5637 2.5748 -0.0257 10 6 4.1779 2.5244 0.0004 11 8 3.4542 3.6652 0.0851 12 6 3.5196 4.3539 1.3388 13 6 4.6762 5.3428 1.3344 14 7 5.9572 4.6587 1.1496 15 6 6.8844 4.6976 2.1269 16 8 7.9131 4.0656 2.0123 17 6 6.6428 5.5265 3.3622 18 1 5.5845 5.4935 3.6207 19 6 7.0573 6.9747 3.0936 20 6 7.4564 4.9747 4.5044 21 1 8.0851 4.1100 4.3513 22 6 7.3981 5.5737 5.7448 23 7 6.6321 6.6264 5.9313 24 14 8.4061 4.8893 7.1609 25 1 9.1781 3.7098 6.6942 26 1 9.3434 5.9319 7.6505 27 1 7.4982 4.4827 8.2635 28 6 6.2375 3.9309 -0.0924 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8151 -0.8551 0.0043 33 1 6.2662 -0.7221 0.0124 34 1 7.3887 1.4726 -0.0099 35 1 3.6655 3.6309 2.1413 36 1 2.5855 4.8912 1.5022 37 1 4.6913 5.8790 2.2833 38 1 4.5325 6.0571 0.5238 39 1 8.0920 6.9990 2.7516 40 1 6.4110 7.4013 2.3267 41 1 6.9643 7.5553 4.0114 42 1 6.5908 7.0476 6.8042 43 1 7.3137 3.7991 -0.2037 44 1 5.8462 4.4920 -0.9410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884754682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:41 Heat of formation + Delta-G solvation = -135.260635 kcal Electronic energy + Delta-G solvation = -29590.705125 eV Core-core repulsion = 25473.404777 eV Total energy + Delta-G solvation = -4117.300348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.17470 -41.18869 -40.16664 -38.58636 -37.43202 -36.44483 -35.88802 -33.64879 -32.27913 -32.14138 -29.83750 -28.71283 -27.59827 -27.26776 -25.35311 -24.70960 -23.57841 -22.49480 -21.85785 -20.31745 -19.09912 -18.61910 -18.50936 -18.15069 -17.67058 -17.38366 -17.19303 -16.62473 -16.38523 -16.25755 -16.14351 -15.88227 -15.01726 -15.00673 -14.85004 -14.47083 -14.35977 -14.24283 -13.83666 -13.49319 -13.29530 -13.13562 -12.97489 -12.96428 -12.88429 -12.71391 -12.61482 -12.58407 -12.27204 -12.14916 -12.05577 -11.79869 -11.75047 -11.15775 -11.04461 -10.64234 -10.35502 -10.07505 -9.77014 -9.64098 -8.16729 -6.27299 -0.48390 0.03306 1.38508 1.41084 1.43582 1.53465 1.63586 1.83689 2.06149 2.33743 2.44869 2.89427 3.12737 3.51755 3.64322 3.73224 3.87192 4.00050 4.05576 4.11627 4.20597 4.23640 4.32096 4.33879 4.39292 4.46313 4.60634 4.64978 4.68721 4.71621 4.75723 4.81868 4.95698 5.01625 5.05531 5.17602 5.31313 5.34383 5.41057 5.54812 5.58845 5.70322 5.92148 6.16200 6.30001 6.49027 6.68336 6.78619 7.34562 7.44157 8.88782 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003428 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.459406 B = 8165.784027 C = 8269.956473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.508 3.492 4 O -0.515 6.515 5 C -0.170 4.170 6 C -0.042 4.042 7 C -0.133 4.133 8 C -0.054 4.054 9 C -0.159 4.159 10 C 0.155 3.845 11 O -0.319 6.319 12 C 0.061 3.939 13 C 0.073 3.927 14 N -0.616 5.616 15 C 0.525 3.475 16 O -0.577 6.577 17 C 0.027 3.973 18 H 0.045 0.955 19 C -0.120 4.120 20 C -0.526 4.526 21 H 0.044 0.956 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.953 3.047 25 H -0.279 1.279 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.156 3.844 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.043 0.957 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.019 0.981 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.266 0.734 43 H 0.090 0.910 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 -11.762 -13.918 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.405 6.405 5 C -0.172 4.172 6 C -0.060 4.060 7 C -0.150 4.150 8 C -0.073 4.073 9 C -0.161 4.161 10 C 0.109 3.891 11 O -0.235 6.235 12 C -0.014 4.014 13 C -0.049 4.049 14 N -0.349 5.349 15 C 0.316 3.684 16 O -0.455 6.455 17 C 0.007 3.993 18 H 0.063 0.937 19 C -0.178 4.178 20 C -0.565 4.565 21 H 0.062 0.938 22 C -0.177 4.177 23 N -0.547 5.547 24 Si 0.779 3.221 25 H -0.204 1.204 26 H -0.201 1.201 27 H -0.199 1.199 28 C 0.033 3.967 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.151 0.849 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.373 -11.558 -13.974 20.891 hybrid contribution 0.430 0.017 1.035 1.121 sum -9.943 -11.541 -12.939 19.987 Atomic orbital electron populations 1.23571 0.74274 1.05898 1.02492 1.86520 1.25210 1.31426 1.84202 1.21061 0.88959 0.81816 0.72851 1.90855 1.66987 1.36667 1.46003 1.19521 0.89935 0.94331 1.13417 1.21678 0.93963 0.97546 0.92802 1.21574 0.94314 0.98565 1.00569 1.21485 1.01162 0.91579 0.93070 1.20898 0.92664 0.97763 1.04752 1.18749 0.89255 0.85597 0.95468 1.86077 1.67460 1.34749 1.35214 1.23201 1.00399 0.94566 0.83211 1.22282 0.81750 0.95347 1.05561 1.48107 1.16588 1.53488 1.16693 1.21707 0.82094 0.80114 0.84478 1.90487 1.29314 1.45793 1.79953 1.18844 0.98167 0.93170 0.89167 0.93723 1.21546 0.98070 0.96667 1.01534 1.21239 1.26775 1.13768 0.94694 0.93776 1.25548 0.96413 0.95212 1.00520 1.69934 1.39447 1.21293 1.24014 0.85579 0.78878 0.78399 0.79274 1.20390 1.20059 1.19885 1.20565 1.00837 0.88300 0.86948 0.92240 0.91885 0.84500 0.81411 0.81210 0.83951 0.93845 0.84934 0.87539 0.88113 0.96129 0.93406 0.90593 0.92510 0.89121 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.67 9.82 -56.57 -0.56 -8.22 16 3 C 0.51 14.08 7.89 70.24 0.55 14.64 16 4 O -0.52 -16.93 14.98 26.76 0.40 -16.53 16 5 C -0.17 -4.64 5.89 -20.00 -0.12 -4.76 16 6 C -0.04 -0.86 9.60 22.53 0.22 -0.65 16 7 C -0.13 -2.60 10.04 22.28 0.22 -2.38 16 8 C -0.05 -1.37 9.70 22.25 0.22 -1.15 16 9 C -0.16 -4.69 5.48 -19.62 -0.11 -4.80 16 10 C 0.15 4.71 5.62 22.86 0.13 4.84 16 11 O -0.32 -10.06 8.01 -65.71 -0.53 -10.58 16 12 C 0.06 1.79 6.67 71.71 0.48 2.27 16 13 C 0.07 2.20 5.99 86.13 0.52 2.72 16 14 N -0.62 -22.04 2.69 -826.01 -2.23 -24.27 16 15 C 0.52 23.96 6.77 87.66 0.59 24.55 16 16 O -0.58 -29.80 15.26 -3.03 -0.05 -29.85 16 17 C 0.03 1.36 1.79 -12.28 -0.02 1.34 16 18 H 0.05 2.22 6.20 -2.39 -0.01 2.21 16 19 C -0.12 -5.56 8.91 71.99 0.64 -4.92 16 20 C -0.53 -30.00 8.33 25.60 0.21 -29.79 16 21 H 0.04 2.69 7.02 -2.91 -0.02 2.67 16 22 C 0.02 1.24 5.29 84.65 0.45 1.69 16 23 N -0.91 -49.90 11.29 21.45 0.24 -49.66 16 24 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.16 4.79 5.64 85.89 0.48 5.27 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.17 2.46 7.61 -2.91 -0.02 2.44 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 3.38 8.00 -2.91 -0.02 3.36 16 35 H 0.04 1.42 7.88 -2.39 -0.02 1.41 16 36 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.11 3.43 4.94 -2.39 -0.01 3.42 16 38 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.84 7.76 -2.39 -0.02 1.82 16 41 H 0.08 3.85 5.95 -2.39 -0.01 3.84 16 42 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 43 H 0.09 2.91 7.01 -2.39 -0.02 2.89 16 44 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -72.61 362.80 6.01 -66.60 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.03 Total: 15.76 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.66 Total: 10.53 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.98 Total: -73.93 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -0.73 Total: -65.19 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.61 6.01 -66.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884754682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.663 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds