Wall clock time and date at job start Tue Mar 31 2020 18:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99721 * 2 1 4 4 O 1.20827 * 119.99737 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99527 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.70302 * 288.09402 * 5 3 2 7 7 C 1.51015 * 109.50465 * 48.13367 * 5 3 2 8 8 C 1.37686 * 120.71018 * 236.84238 * 7 5 3 9 9 C 1.38445 * 119.67817 * 175.51005 * 8 7 5 10 10 C 1.38291 * 119.97364 * 0.06442 * 9 8 7 11 11 C 1.38131 * 120.33725 * 0.96190 * 10 9 8 12 12 C 1.38706 * 118.53318 * 54.33214 * 7 5 3 13 13 O 1.35625 * 120.29104 * 5.70704 * 12 7 5 14 14 C 1.43233 * 115.84967 * 69.89213 * 13 12 7 15 15 C 1.52173 * 110.17671 * 270.70506 * 14 13 12 16 16 N 1.46385 * 111.21785 * 61.29375 * 15 14 13 17 17 C 1.34773 * 119.79418 * 116.37232 * 16 15 14 18 18 O 1.21281 * 120.00509 * 184.93382 * 17 16 15 19 19 C 1.50704 * 120.00104 * 4.93046 * 17 16 15 20 20 H 1.09009 * 109.46817 * 321.37551 * 19 17 16 21 21 C 1.52993 * 109.47393 * 201.37754 * 19 17 16 22 22 C 1.50697 * 109.46936 * 81.37131 * 19 17 16 23 23 H 1.07996 * 120.00396 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99867 * 180.02562 * 22 19 17 25 25 N 1.31514 * 120.00387 * 0.02562 * 24 22 19 26 26 Si 1.86799 * 119.99791 * 180.02562 * 24 22 19 27 27 H 1.48495 * 109.47565 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47162 * 120.00123 * 26 24 22 29 29 H 1.48500 * 109.46996 * 239.99822 * 26 24 22 30 30 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47178 * 299.99255 * 1 2 3 32 32 H 1.08996 * 109.47734 * 59.99579 * 1 2 3 33 33 H 1.08002 * 120.16306 * 355.47754 * 8 7 5 34 34 H 1.08002 * 120.01412 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.82971 * 180.97993 * 10 9 8 36 36 H 1.07999 * 120.07062 * 179.88353 * 11 10 9 37 37 H 1.08997 * 109.34976 * 150.49014 * 14 13 12 38 38 H 1.09002 * 109.23614 * 30.85021 * 14 13 12 39 39 H 1.09001 * 109.12987 * 300.84844 * 15 14 13 40 40 H 1.08996 * 109.13039 * 181.73802 * 15 14 13 41 41 H 1.08996 * 109.47580 * 53.95551 * 21 19 17 42 42 H 1.09002 * 109.46844 * 293.95738 * 21 19 17 43 43 H 1.08998 * 109.47293 * 173.95952 * 21 19 17 44 44 H 0.97000 * 120.00607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9503 0.9756 0.9747 7 6 4.1191 0.3527 -1.0611 8 6 5.0173 -0.6378 -0.7328 9 6 5.4391 -1.5299 -1.7039 10 6 4.9590 -1.4223 -2.9963 11 6 4.0742 -0.4155 -3.3304 12 6 3.6621 0.4914 -2.3633 13 8 2.8278 1.5093 -2.6908 14 6 3.4074 2.8191 -2.6826 15 6 3.2781 3.4417 -1.3002 16 7 3.9864 2.6490 -0.2938 17 6 5.0346 3.1835 0.3635 18 8 5.6796 2.5024 1.1323 19 6 5.4054 4.6275 0.1432 20 1 5.2768 4.8790 -0.9096 21 6 6.8652 4.8463 0.5452 22 6 4.5158 5.5081 0.9823 23 1 3.7581 5.0664 1.6124 24 6 4.6693 6.8778 0.9456 25 7 5.5916 7.4159 0.1779 26 14 3.5670 7.9694 1.9863 27 1 2.6185 7.1250 2.7559 28 1 4.4001 8.7607 2.9271 29 1 2.8068 8.8903 1.1036 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 5.3915 -0.7182 0.2771 34 1 6.1432 -2.3092 -1.4523 35 1 5.2774 -2.1291 -3.7483 36 1 3.7035 -0.3343 -4.3415 37 1 2.8931 3.4462 -3.4108 38 1 4.4619 2.7469 -2.9491 39 1 2.2232 3.4996 -1.0317 40 1 3.6961 4.4481 -1.3211 41 1 7.4985 4.1344 0.0158 42 1 6.9722 4.6985 1.6198 43 1 7.1651 5.8617 0.2864 44 1 5.6999 8.3795 0.1523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884859011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:29 Heat of formation + Delta-G solvation = -106.634112 kcal Electronic energy + Delta-G solvation = -30717.468528 eV Core-core repulsion = 26601.409519 eV Total energy + Delta-G solvation = -4116.059009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29062 -39.68277 -38.81929 -37.44666 -36.44851 -34.84898 -33.98964 -32.37907 -30.63539 -30.33516 -28.47841 -28.32156 -26.61347 -25.19485 -23.58106 -22.65630 -22.37100 -21.68952 -20.44181 -18.72724 -18.01619 -17.28906 -17.02712 -16.58614 -16.45003 -16.05939 -15.81065 -15.65264 -15.02066 -14.92854 -14.59573 -14.22098 -13.94034 -13.65543 -13.38657 -13.33084 -13.11009 -12.55171 -12.32643 -12.27431 -12.02209 -11.96252 -11.73333 -11.60541 -11.38160 -11.04176 -11.00282 -10.82620 -10.68427 -10.53136 -10.29156 -10.20315 -10.13730 -9.95288 -9.08081 -9.02867 -8.72419 -8.53266 -8.38859 -8.21939 -6.15594 -4.23219 1.12184 1.29976 2.28319 2.61810 3.24714 3.29278 3.32827 3.37963 3.55993 3.67997 4.06224 4.36855 4.56774 4.75281 4.89158 5.02331 5.11509 5.16708 5.18915 5.22311 5.28339 5.33772 5.37221 5.45556 5.50956 5.53282 5.57373 5.91336 5.93742 6.09496 6.26480 6.27990 6.41468 6.46728 6.65779 6.71385 6.76954 6.85494 6.93850 7.07516 7.50003 7.51683 7.70013 7.85234 7.89656 7.99483 8.15999 8.77607 8.99354 9.42817 10.90748 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.004627 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.197595 B = 6050.463721 C = 6849.985399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.482 6.482 5 C 0.195 3.805 6 H 0.135 0.865 7 C -0.122 4.122 8 C -0.073 4.073 9 C -0.131 4.131 10 C -0.101 4.101 11 C -0.137 4.137 12 C 0.115 3.885 13 O -0.332 6.332 14 C 0.049 3.951 15 C 0.054 3.946 16 N -0.597 5.597 17 C 0.535 3.465 18 O -0.557 6.557 19 C 0.035 3.965 20 H 0.049 0.951 21 C -0.120 4.120 22 C -0.510 4.510 23 H 0.060 0.940 24 C 0.069 3.931 25 N -0.885 5.885 26 Si 0.899 3.101 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.011 0.989 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -15.705 -7.403 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.368 6.368 5 C 0.089 3.911 6 H 0.152 0.848 7 C -0.124 4.124 8 C -0.092 4.092 9 C -0.149 4.149 10 C -0.119 4.119 11 C -0.156 4.156 12 C 0.071 3.929 13 O -0.249 6.249 14 C -0.026 4.026 15 C -0.069 4.069 16 N -0.331 5.331 17 C 0.328 3.672 18 O -0.434 6.434 19 C 0.014 3.986 20 H 0.067 0.933 21 C -0.178 4.178 22 C -0.549 4.549 23 H 0.078 0.922 24 C -0.134 4.134 25 N -0.522 5.522 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.030 0.970 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.284 -15.552 -7.074 17.883 hybrid contribution -0.684 0.745 0.570 1.161 sum -5.968 -14.806 -6.504 17.238 Atomic orbital electron populations 1.23217 0.76559 1.03317 1.02537 1.86501 1.23146 1.33145 1.84176 1.23592 0.91328 0.81629 0.72520 1.90567 1.66516 1.35663 1.44095 1.19179 0.86747 0.84847 1.00294 0.84758 1.20248 0.99941 0.98312 0.93858 1.20884 0.95104 0.92966 1.00252 1.21169 1.00883 0.99683 0.93161 1.21017 0.96707 0.97553 0.96614 1.21174 0.98481 0.97002 0.98931 1.18587 0.92147 0.90732 0.91475 1.86109 1.35890 1.14608 1.88315 1.23333 0.99054 0.81490 0.98696 1.22560 1.01498 0.96904 0.85907 1.47840 1.33152 1.11035 1.41115 1.22216 0.76741 0.90972 0.77299 1.90529 1.52045 1.63366 1.37444 1.18965 0.95854 0.84789 0.99000 0.93340 1.21585 0.94854 1.01654 0.99687 1.20776 1.17224 0.90565 1.26312 0.92169 1.24884 0.95349 0.97837 0.95295 1.69898 1.32405 1.11546 1.38391 0.86415 0.80458 0.80315 0.80201 1.19640 1.20847 1.20793 0.88363 0.92028 0.91842 0.84981 0.85527 0.85625 0.85353 0.87288 0.91997 0.87462 0.85564 0.97022 0.94204 0.89688 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -5.28 10.25 -39.27 -0.40 -5.69 16 3 C 0.47 8.14 5.70 36.00 0.21 8.35 16 4 O -0.48 -9.34 13.25 -18.75 -0.25 -9.59 16 5 C 0.20 3.48 2.73 -70.00 -0.19 3.29 16 6 H 0.13 2.43 6.99 -51.93 -0.36 2.07 16 7 C -0.12 -1.92 4.77 -104.50 -0.50 -2.42 16 8 C -0.07 -1.01 9.70 -39.71 -0.39 -1.40 16 9 C -0.13 -1.48 10.06 -39.49 -0.40 -1.88 16 10 C -0.10 -1.09 10.02 -39.60 -0.40 -1.48 16 11 C -0.14 -1.72 10.00 -39.40 -0.39 -2.11 16 12 C 0.11 1.74 5.32 -39.19 -0.21 1.53 16 13 O -0.33 -5.24 8.96 -18.57 -0.17 -5.40 16 14 C 0.05 0.74 6.68 36.74 0.25 0.99 16 15 C 0.05 0.98 5.42 -4.53 -0.02 0.95 16 16 N -0.60 -11.90 2.48 -169.05 -0.42 -12.32 16 17 C 0.53 12.35 6.74 -10.99 -0.07 12.28 16 18 O -0.56 -13.76 15.63 5.56 0.09 -13.67 16 19 C 0.03 0.85 1.79 -92.93 -0.17 0.69 16 20 H 0.05 1.19 6.37 -51.92 -0.33 0.85 16 21 C -0.12 -2.96 8.26 37.15 0.31 -2.65 16 22 C -0.51 -13.58 8.15 -34.44 -0.28 -13.86 16 23 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 24 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 25 N -0.88 -23.82 11.39 55.43 0.63 -23.19 16 26 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.13 1.70 7.99 -52.49 -0.42 1.28 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 39 H 0.11 2.07 5.17 -51.93 -0.27 1.80 16 40 H 0.13 2.47 5.08 -51.93 -0.26 2.20 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 43 H 0.08 2.20 6.26 -51.93 -0.33 1.87 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -31.44 358.75 -7.14 -38.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.72 Total: 4.51 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.29 Total: 5.49 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.21 Total: -35.50 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.73 Total: -34.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.44 -7.14 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.055 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds