Wall clock time and date at job start Tue Mar 31 2020 18:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99721 * 2 1 4 4 O 1.20827 * 119.99737 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99527 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.70302 * 288.09402 * 5 3 2 7 7 C 1.51015 * 109.50465 * 48.13367 * 5 3 2 8 8 C 1.37686 * 120.71018 * 236.84238 * 7 5 3 9 9 C 1.38445 * 119.67817 * 175.51005 * 8 7 5 10 10 C 1.38291 * 119.97364 * 0.06442 * 9 8 7 11 11 C 1.38131 * 120.33725 * 0.96190 * 10 9 8 12 12 C 1.38706 * 118.53318 * 54.33214 * 7 5 3 13 13 O 1.35625 * 120.29104 * 5.70704 * 12 7 5 14 14 C 1.43233 * 115.84967 * 69.89213 * 13 12 7 15 15 C 1.52173 * 110.17671 * 270.70506 * 14 13 12 16 16 N 1.46385 * 111.21785 * 61.29375 * 15 14 13 17 17 C 1.34773 * 119.79418 * 116.37232 * 16 15 14 18 18 O 1.21281 * 120.00509 * 184.93382 * 17 16 15 19 19 C 1.50704 * 120.00104 * 4.93046 * 17 16 15 20 20 H 1.09009 * 109.46817 * 321.37551 * 19 17 16 21 21 C 1.52993 * 109.47393 * 201.37754 * 19 17 16 22 22 C 1.50697 * 109.46936 * 81.37131 * 19 17 16 23 23 H 1.07996 * 120.00396 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99867 * 180.02562 * 22 19 17 25 25 N 1.31514 * 120.00387 * 0.02562 * 24 22 19 26 26 Si 1.86799 * 119.99791 * 180.02562 * 24 22 19 27 27 H 1.48495 * 109.47565 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47162 * 120.00123 * 26 24 22 29 29 H 1.48500 * 109.46996 * 239.99822 * 26 24 22 30 30 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47178 * 299.99255 * 1 2 3 32 32 H 1.08996 * 109.47734 * 59.99579 * 1 2 3 33 33 H 1.08002 * 120.16306 * 355.47754 * 8 7 5 34 34 H 1.08002 * 120.01412 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.82971 * 180.97993 * 10 9 8 36 36 H 1.07999 * 120.07062 * 179.88353 * 11 10 9 37 37 H 1.08997 * 109.34976 * 150.49014 * 14 13 12 38 38 H 1.09002 * 109.23614 * 30.85021 * 14 13 12 39 39 H 1.09001 * 109.12987 * 300.84844 * 15 14 13 40 40 H 1.08996 * 109.13039 * 181.73802 * 15 14 13 41 41 H 1.08996 * 109.47580 * 53.95551 * 21 19 17 42 42 H 1.09002 * 109.46844 * 293.95738 * 21 19 17 43 43 H 1.08998 * 109.47293 * 173.95952 * 21 19 17 44 44 H 0.97000 * 120.00607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9503 0.9756 0.9747 7 6 4.1191 0.3527 -1.0611 8 6 5.0173 -0.6378 -0.7328 9 6 5.4391 -1.5299 -1.7039 10 6 4.9590 -1.4223 -2.9963 11 6 4.0742 -0.4155 -3.3304 12 6 3.6621 0.4914 -2.3633 13 8 2.8278 1.5093 -2.6908 14 6 3.4074 2.8191 -2.6826 15 6 3.2781 3.4417 -1.3002 16 7 3.9864 2.6490 -0.2938 17 6 5.0346 3.1835 0.3635 18 8 5.6796 2.5024 1.1323 19 6 5.4054 4.6275 0.1432 20 1 5.2768 4.8790 -0.9096 21 6 6.8652 4.8463 0.5452 22 6 4.5158 5.5081 0.9823 23 1 3.7581 5.0664 1.6124 24 6 4.6693 6.8778 0.9456 25 7 5.5916 7.4159 0.1779 26 14 3.5670 7.9694 1.9863 27 1 2.6185 7.1250 2.7559 28 1 4.4001 8.7607 2.9271 29 1 2.8068 8.8903 1.1036 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 5.3915 -0.7182 0.2771 34 1 6.1432 -2.3092 -1.4523 35 1 5.2774 -2.1291 -3.7483 36 1 3.7035 -0.3343 -4.3415 37 1 2.8931 3.4462 -3.4108 38 1 4.4619 2.7469 -2.9491 39 1 2.2232 3.4996 -1.0317 40 1 3.6961 4.4481 -1.3211 41 1 7.4985 4.1344 0.0158 42 1 6.9722 4.6985 1.6198 43 1 7.1651 5.8617 0.2864 44 1 5.6999 8.3795 0.1523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884859011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:28 Heat of formation + Delta-G solvation = -124.668853 kcal Electronic energy + Delta-G solvation = -30718.250573 eV Core-core repulsion = 26601.409519 eV Total energy + Delta-G solvation = -4116.841054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.60887 -40.93060 -40.39958 -38.56416 -37.76355 -36.37703 -35.95447 -33.70771 -32.26589 -31.69865 -29.75927 -29.42023 -27.84693 -27.22636 -24.95437 -24.31663 -23.45427 -22.86814 -21.79035 -20.27768 -19.40802 -18.74159 -18.41971 -18.31243 -17.85785 -17.46240 -17.12923 -16.86979 -16.49147 -16.22182 -16.00191 -15.75100 -15.18238 -15.01256 -14.76211 -14.64442 -14.54544 -14.14736 -13.63773 -13.59245 -13.43365 -13.16318 -13.13421 -12.92408 -12.85754 -12.82143 -12.62755 -12.49745 -12.26799 -12.12782 -12.06970 -11.84552 -11.56573 -11.23272 -11.11624 -10.70248 -10.43903 -9.92692 -9.75801 -9.52721 -8.20457 -6.34356 0.09457 0.31459 0.91782 1.27943 1.38841 1.42039 1.52740 1.78825 2.06715 2.40673 2.45574 2.98362 3.09380 3.36836 3.54041 3.72238 3.92141 4.00663 4.10089 4.17312 4.19953 4.25747 4.26411 4.29334 4.45646 4.48607 4.56077 4.63289 4.71039 4.76338 4.89606 4.94776 4.96765 5.05769 5.30100 5.34256 5.36775 5.42533 5.46739 5.50241 5.64641 5.77563 5.81804 6.08217 6.28330 6.40465 6.57737 6.67471 7.18896 7.34770 8.85587 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.004627 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.197595 B = 6050.463721 C = 6849.985399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.473 3.527 4 O -0.510 6.510 5 C 0.190 3.810 6 H 0.123 0.877 7 C -0.143 4.143 8 C -0.089 4.089 9 C -0.123 4.123 10 C -0.089 4.089 11 C -0.136 4.136 12 C 0.089 3.911 13 O -0.338 6.338 14 C 0.057 3.943 15 C 0.055 3.945 16 N -0.593 5.593 17 C 0.533 3.467 18 O -0.582 6.582 19 C 0.034 3.966 20 H 0.049 0.951 21 C -0.108 4.108 22 C -0.525 4.525 23 H 0.040 0.960 24 C 0.034 3.966 25 N -0.902 5.902 26 Si 0.955 3.045 27 H -0.280 1.280 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -17.601 -9.073 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.316 3.684 4 O -0.399 6.399 5 C 0.085 3.915 6 H 0.140 0.860 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.141 4.141 10 C -0.107 4.107 11 C -0.154 4.154 12 C 0.046 3.954 13 O -0.255 6.255 14 C -0.018 4.018 15 C -0.067 4.067 16 N -0.326 5.326 17 C 0.325 3.675 18 O -0.462 6.462 19 C 0.013 3.987 20 H 0.066 0.934 21 C -0.166 4.166 22 C -0.563 4.563 23 H 0.058 0.942 24 C -0.168 4.168 25 N -0.540 5.540 26 Si 0.780 3.220 27 H -0.205 1.205 28 H -0.203 1.203 29 H -0.195 1.195 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.091 0.909 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.700 -17.477 -8.771 20.368 hybrid contribution -0.599 1.203 1.070 1.718 sum -6.299 -16.274 -7.701 19.074 Atomic orbital electron populations 1.23580 0.74287 1.05892 1.02477 1.86482 1.25269 1.31521 1.83479 1.23458 0.91154 0.81960 0.71856 1.90553 1.67058 1.36618 1.45624 1.19283 0.87490 0.83905 1.00859 0.85955 1.20155 1.01689 0.99034 0.93586 1.21062 0.95051 0.93432 1.01185 1.21560 1.00483 0.99233 0.92783 1.21490 0.94977 0.97073 0.97141 1.21480 0.98256 0.96444 0.99268 1.18865 0.93269 0.91449 0.91867 1.86103 1.36521 1.14716 1.88176 1.23294 0.99667 0.81948 0.96866 1.22570 1.00272 0.96380 0.87518 1.47724 1.32090 1.12187 1.40591 1.21853 0.77701 0.90439 0.77504 1.90498 1.53296 1.63738 1.38643 1.18869 0.95374 0.85853 0.98581 0.93378 1.21427 0.95456 1.01171 0.98583 1.20803 1.17427 0.91382 1.26708 0.94165 1.25490 0.96430 0.98678 0.96170 1.69961 1.33035 1.12055 1.38906 0.85556 0.78844 0.78667 0.78900 1.20476 1.20286 1.19533 0.84445 0.92060 0.92002 0.85135 0.82350 0.81676 0.83326 0.84382 0.91921 0.88554 0.87383 0.95663 0.95907 0.90918 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.35 -10.36 10.25 -51.46 -0.53 -10.89 16 3 C 0.47 16.80 5.70 71.24 0.41 17.20 16 4 O -0.51 -20.34 13.25 21.96 0.29 -20.05 16 5 C 0.19 6.99 2.73 43.57 0.12 7.10 16 6 H 0.12 4.70 6.99 -2.38 -0.02 4.68 16 7 C -0.14 -4.47 4.77 -19.78 -0.09 -4.56 16 8 C -0.09 -2.35 9.70 22.19 0.22 -2.13 16 9 C -0.12 -2.38 10.06 22.33 0.22 -2.15 16 10 C -0.09 -1.55 10.02 22.26 0.22 -1.32 16 11 C -0.14 -2.98 10.00 22.39 0.22 -2.76 16 12 C 0.09 2.59 5.32 22.52 0.12 2.71 16 13 O -0.34 -10.37 8.96 -89.38 -0.80 -11.17 16 14 C 0.06 1.70 6.68 71.71 0.48 2.18 16 15 C 0.05 2.06 5.42 86.13 0.47 2.52 16 16 N -0.59 -24.52 2.48 -807.14 -2.00 -26.52 16 17 C 0.53 25.58 6.74 87.66 0.59 26.17 16 18 O -0.58 -29.88 15.63 -3.03 -0.05 -29.93 16 19 C 0.03 1.73 1.79 -12.29 -0.02 1.71 16 20 H 0.05 2.43 6.37 -2.38 -0.02 2.42 16 21 C -0.11 -5.50 8.26 71.98 0.59 -4.90 16 22 C -0.53 -28.86 8.15 25.60 0.21 -28.65 16 23 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 24 C 0.03 1.79 5.30 84.65 0.45 2.24 16 25 N -0.90 -48.95 11.39 21.45 0.24 -48.70 16 26 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 30 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.13 3.37 7.99 -2.91 -0.02 3.35 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 39 H 0.10 3.87 5.17 -2.39 -0.01 3.85 16 40 H 0.11 4.42 5.08 -2.39 -0.01 4.41 16 41 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.02 1.17 8.07 -2.39 -0.02 1.16 16 43 H 0.07 3.84 6.26 -2.39 -0.01 3.83 16 44 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -69.46 358.75 5.61 -63.85 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 1.03 Total: 20.90 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.40 Total: 17.21 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.76 Total: -75.23 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -1.08 Total: -72.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.46 5.61 -63.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.818 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds