Wall clock time and date at job start Tue Mar 31 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00311 * 2 1 4 4 O 1.20829 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00533 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.58284 * 70.43173 * 5 3 2 7 7 C 1.51630 * 109.58180 * 310.15389 * 5 3 2 8 8 C 1.37642 * 120.79809 * 123.78552 * 7 5 3 9 9 C 1.38453 * 119.68645 * 182.45922 * 8 7 5 10 10 C 1.38285 * 119.94701 * 0.70616 * 9 8 7 11 11 C 1.38120 * 120.35862 * 359.34728 * 10 9 8 12 12 C 1.38716 * 118.41556 * 305.47950 * 7 5 3 13 13 O 1.35567 * 120.40703 * 354.63645 * 12 7 5 14 14 C 1.43258 * 115.82320 * 289.78831 * 13 12 7 15 15 C 1.52172 * 110.14029 * 89.21888 * 14 13 12 16 16 N 1.46371 * 111.20538 * 298.81231 * 15 14 13 17 17 C 1.34778 * 119.77683 * 243.72026 * 16 15 14 18 18 O 1.21276 * 120.00297 * 186.53757 * 17 16 15 19 19 C 1.50703 * 119.99583 * 6.53245 * 17 16 15 20 20 H 1.09001 * 109.47473 * 33.95488 * 19 17 16 21 21 C 1.53005 * 109.46932 * 153.95226 * 19 17 16 22 22 C 1.50700 * 109.47146 * 273.94689 * 19 17 16 23 23 H 1.07994 * 119.99933 * 0.02562 * 22 19 17 24 24 C 1.37877 * 119.99702 * 179.97438 * 22 19 17 25 25 N 1.31514 * 120.00308 * 0.02562 * 24 22 19 26 26 Si 1.86802 * 119.99782 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.46954 * 60.00307 * 26 24 22 28 28 H 1.48498 * 109.47070 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47257 * 300.00243 * 26 24 22 30 30 H 1.08996 * 109.47431 * 59.99408 * 1 2 3 31 31 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46494 * 299.99478 * 1 2 3 33 33 H 1.07997 * 120.16284 * 2.47867 * 8 7 5 34 34 H 1.08003 * 120.02339 * 180.69113 * 9 8 7 35 35 H 1.08001 * 119.81919 * 179.06779 * 10 9 8 36 36 H 1.08000 * 120.06586 * 179.42117 * 11 10 9 37 37 H 1.08998 * 109.35630 * 329.00597 * 14 13 12 38 38 H 1.09000 * 109.35127 * 209.42288 * 14 13 12 39 39 H 1.09002 * 109.13311 * 178.37257 * 15 14 13 40 40 H 1.08997 * 109.13882 * 59.26184 * 15 14 13 41 41 H 1.08997 * 109.47213 * 68.03790 * 21 19 17 42 42 H 1.09002 * 109.47169 * 188.04516 * 21 19 17 43 43 H 1.09004 * 109.46844 * 308.03793 * 21 19 17 44 44 H 0.97007 * 120.00020 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9488 0.9507 -0.9684 7 6 4.1226 0.3813 1.0909 8 6 5.0312 -0.6095 0.7958 9 6 5.4854 -1.4452 1.8019 10 6 5.0144 -1.2907 3.0928 11 6 4.1017 -0.2971 3.3887 12 6 3.6670 0.5627 2.3885 13 8 2.8295 1.5867 2.6849 14 6 3.4059 2.8975 2.6392 15 6 3.2782 3.4774 1.2381 16 7 3.9890 2.6551 0.2579 17 6 5.0391 3.1699 -0.4121 18 8 5.5565 2.5367 -1.3077 19 6 5.5701 4.5326 -0.0483 20 1 5.4638 4.6894 1.0251 21 6 7.0482 4.6232 -0.4329 22 6 4.7925 5.5892 -0.7899 23 1 3.9934 5.3027 -1.4575 24 6 5.1006 6.9217 -0.6152 25 7 6.0733 7.2706 0.1981 26 14 4.1362 8.2314 -1.5339 27 1 2.7016 8.1430 -1.1605 28 1 4.6595 9.5741 -1.1755 29 1 4.2811 8.0184 -2.9964 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 5.3885 -0.7344 -0.2157 34 1 6.2069 -2.2173 1.5785 35 1 5.3587 -1.9533 3.8731 36 1 3.7299 -0.1866 4.3966 37 1 4.4598 2.8384 2.9113 38 1 2.8879 3.5447 3.3469 39 1 3.6952 4.4845 1.2290 40 1 2.2239 3.5261 0.9662 41 1 7.1426 4.6095 -1.5187 42 1 7.4689 5.5502 -0.0433 43 1 7.5862 3.7744 -0.0107 44 1 6.2903 8.2081 0.3207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884859013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:32 Heat of formation + Delta-G solvation = -107.362218 kcal Electronic energy + Delta-G solvation = -30709.023825 eV Core-core repulsion = 26592.933243 eV Total energy + Delta-G solvation = -4116.090582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28039 -39.69388 -38.82163 -37.43703 -36.46208 -34.84115 -33.99366 -32.35251 -30.62703 -30.34782 -28.45977 -28.33781 -26.61634 -25.21230 -23.58527 -22.65685 -22.36701 -21.67434 -20.44917 -18.71961 -18.04200 -17.29854 -17.02537 -16.56673 -16.44963 -16.06960 -15.82178 -15.65091 -15.02268 -14.94092 -14.55513 -14.22960 -13.94510 -13.61641 -13.37432 -13.33041 -13.12488 -12.55262 -12.33681 -12.27455 -12.05132 -11.98219 -11.75048 -11.57817 -11.39232 -11.02509 -10.98851 -10.85075 -10.69810 -10.57093 -10.30124 -10.18827 -10.11869 -9.95634 -9.10965 -9.03350 -8.72420 -8.53100 -8.40388 -8.21230 -6.16221 -4.24304 1.11813 1.29152 2.27330 2.61387 3.27403 3.28931 3.31513 3.34337 3.55104 3.68624 4.08576 4.35770 4.54470 4.74578 4.88743 5.01948 5.10242 5.15548 5.17992 5.21775 5.29571 5.35682 5.38285 5.46396 5.50696 5.53050 5.58673 5.90716 5.95850 6.11744 6.26129 6.27701 6.41116 6.46143 6.67454 6.71543 6.75522 6.88355 6.92246 7.05185 7.49266 7.52883 7.69453 7.84037 7.88005 7.98432 8.15820 8.76221 8.98996 9.41695 10.89994 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.004615 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.865338 B = 6065.628722 C = 6840.344327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.469 3.531 4 O -0.484 6.484 5 C 0.193 3.807 6 H 0.137 0.863 7 C -0.122 4.122 8 C -0.075 4.075 9 C -0.130 4.130 10 C -0.101 4.101 11 C -0.137 4.137 12 C 0.116 3.884 13 O -0.333 6.333 14 C 0.050 3.950 15 C 0.052 3.948 16 N -0.599 5.599 17 C 0.536 3.464 18 O -0.557 6.557 19 C 0.036 3.964 20 H 0.048 0.952 21 C -0.119 4.119 22 C -0.515 4.515 23 H 0.059 0.941 24 C 0.070 3.930 25 N -0.884 5.884 26 Si 0.899 3.101 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.010 0.990 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 -15.503 6.967 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.370 6.370 5 C 0.087 3.913 6 H 0.154 0.846 7 C -0.124 4.124 8 C -0.094 4.094 9 C -0.148 4.148 10 C -0.119 4.119 11 C -0.156 4.156 12 C 0.071 3.929 13 O -0.250 6.250 14 C -0.025 4.025 15 C -0.070 4.070 16 N -0.333 5.333 17 C 0.329 3.671 18 O -0.434 6.434 19 C 0.015 3.985 20 H 0.065 0.935 21 C -0.177 4.177 22 C -0.553 4.553 23 H 0.077 0.923 24 C -0.133 4.133 25 N -0.521 5.521 26 Si 0.726 3.274 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.029 0.971 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.002 -15.333 6.594 17.737 hybrid contribution -0.614 0.835 -0.509 1.155 sum -6.616 -14.498 6.085 17.058 Atomic orbital electron populations 1.23220 0.76550 1.03336 1.02532 1.86501 1.23163 1.33168 1.84159 1.23611 0.91340 0.81601 0.72401 1.90547 1.66577 1.35639 1.44267 1.19298 0.86769 0.85053 1.00154 0.84599 1.20361 0.99838 0.98425 0.93802 1.20860 0.95067 0.93293 1.00142 1.21169 1.00820 0.99957 0.92895 1.21022 0.96571 0.97478 0.96810 1.21209 0.98030 0.97581 0.98754 1.18588 0.92002 0.90802 0.91479 1.86094 1.35888 1.14141 1.88859 1.23324 0.99191 0.81389 0.98602 1.22605 1.01294 0.96788 0.86338 1.47876 1.32814 1.10326 1.42334 1.22238 0.76746 0.88766 0.79364 1.90524 1.59365 1.62794 1.30681 1.18940 0.94774 0.86346 0.98430 0.93452 1.21586 0.95504 1.00231 1.00353 1.20710 1.17505 0.89887 1.27177 0.92253 1.24886 0.95012 0.98421 0.94955 1.69889 1.28778 1.17513 1.35953 0.86533 0.80221 0.80243 0.80387 1.19977 1.21114 1.20096 0.92038 0.88343 0.91830 0.85020 0.85494 0.85603 0.85326 0.91886 0.87331 0.85291 0.87407 0.94093 0.89789 0.97098 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.35 -5.25 10.29 -39.26 -0.40 -5.66 16 3 C 0.47 8.12 5.73 36.00 0.21 8.32 16 4 O -0.48 -9.28 13.18 -18.75 -0.25 -9.53 16 5 C 0.19 3.44 2.81 -69.70 -0.20 3.24 16 6 H 0.14 2.45 6.91 -51.93 -0.36 2.09 16 7 C -0.12 -1.93 4.82 -104.20 -0.50 -2.43 16 8 C -0.08 -1.02 9.71 -39.72 -0.39 -1.41 16 9 C -0.13 -1.47 10.06 -39.48 -0.40 -1.87 16 10 C -0.10 -1.09 10.02 -39.61 -0.40 -1.49 16 11 C -0.14 -1.72 10.00 -39.39 -0.39 -2.12 16 12 C 0.12 1.75 5.32 -39.17 -0.21 1.55 16 13 O -0.33 -5.28 8.97 -18.40 -0.16 -5.45 16 14 C 0.05 0.77 6.68 36.74 0.25 1.01 16 15 C 0.05 0.96 5.32 -4.53 -0.02 0.93 16 16 N -0.60 -11.95 2.48 -168.72 -0.42 -12.37 16 17 C 0.54 12.41 6.68 -10.98 -0.07 12.34 16 18 O -0.56 -13.87 15.68 5.56 0.09 -13.78 16 19 C 0.04 0.88 1.78 -92.92 -0.17 0.72 16 20 H 0.05 1.16 6.66 -51.93 -0.35 0.81 16 21 C -0.12 -2.93 8.28 37.16 0.31 -2.62 16 22 C -0.51 -13.65 7.79 -34.44 -0.27 -13.92 16 23 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 24 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 25 N -0.88 -23.71 11.42 55.43 0.63 -23.07 16 26 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 33 H 0.13 1.67 8.00 -52.49 -0.42 1.25 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 38 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.13 2.57 5.06 -51.93 -0.26 2.31 16 40 H 0.11 2.08 5.12 -51.93 -0.27 1.81 16 41 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 42 H 0.08 2.16 6.33 -51.93 -0.33 1.83 16 43 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -31.28 358.69 -7.14 -38.43 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.73 Total: 4.80 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.28 Total: 5.50 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.21 Total: -35.44 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.73 Total: -34.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.28 -7.14 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.936 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds