Wall clock time and date at job start Tue Mar 31 2020 18:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00311 * 2 1 4 4 O 1.20829 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00533 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.58284 * 70.43173 * 5 3 2 7 7 C 1.51630 * 109.58180 * 310.15389 * 5 3 2 8 8 C 1.37642 * 120.79809 * 123.78552 * 7 5 3 9 9 C 1.38453 * 119.68645 * 182.45922 * 8 7 5 10 10 C 1.38285 * 119.94701 * 0.70616 * 9 8 7 11 11 C 1.38120 * 120.35862 * 359.34728 * 10 9 8 12 12 C 1.38716 * 118.41556 * 305.47950 * 7 5 3 13 13 O 1.35567 * 120.40703 * 354.63645 * 12 7 5 14 14 C 1.43258 * 115.82320 * 289.78831 * 13 12 7 15 15 C 1.52172 * 110.14029 * 89.21888 * 14 13 12 16 16 N 1.46371 * 111.20538 * 298.81231 * 15 14 13 17 17 C 1.34778 * 119.77683 * 243.72026 * 16 15 14 18 18 O 1.21276 * 120.00297 * 186.53757 * 17 16 15 19 19 C 1.50703 * 119.99583 * 6.53245 * 17 16 15 20 20 H 1.09001 * 109.47473 * 33.95488 * 19 17 16 21 21 C 1.53005 * 109.46932 * 153.95226 * 19 17 16 22 22 C 1.50700 * 109.47146 * 273.94689 * 19 17 16 23 23 H 1.07994 * 119.99933 * 0.02562 * 22 19 17 24 24 C 1.37877 * 119.99702 * 179.97438 * 22 19 17 25 25 N 1.31514 * 120.00308 * 0.02562 * 24 22 19 26 26 Si 1.86802 * 119.99782 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.46954 * 60.00307 * 26 24 22 28 28 H 1.48498 * 109.47070 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47257 * 300.00243 * 26 24 22 30 30 H 1.08996 * 109.47431 * 59.99408 * 1 2 3 31 31 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46494 * 299.99478 * 1 2 3 33 33 H 1.07997 * 120.16284 * 2.47867 * 8 7 5 34 34 H 1.08003 * 120.02339 * 180.69113 * 9 8 7 35 35 H 1.08001 * 119.81919 * 179.06779 * 10 9 8 36 36 H 1.08000 * 120.06586 * 179.42117 * 11 10 9 37 37 H 1.08998 * 109.35630 * 329.00597 * 14 13 12 38 38 H 1.09000 * 109.35127 * 209.42288 * 14 13 12 39 39 H 1.09002 * 109.13311 * 178.37257 * 15 14 13 40 40 H 1.08997 * 109.13882 * 59.26184 * 15 14 13 41 41 H 1.08997 * 109.47213 * 68.03790 * 21 19 17 42 42 H 1.09002 * 109.47169 * 188.04516 * 21 19 17 43 43 H 1.09004 * 109.46844 * 308.03793 * 21 19 17 44 44 H 0.97007 * 120.00020 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9488 0.9507 -0.9684 7 6 4.1226 0.3813 1.0909 8 6 5.0312 -0.6095 0.7958 9 6 5.4854 -1.4452 1.8019 10 6 5.0144 -1.2907 3.0928 11 6 4.1017 -0.2971 3.3887 12 6 3.6670 0.5627 2.3885 13 8 2.8295 1.5867 2.6849 14 6 3.4059 2.8975 2.6392 15 6 3.2782 3.4774 1.2381 16 7 3.9890 2.6551 0.2579 17 6 5.0391 3.1699 -0.4121 18 8 5.5565 2.5367 -1.3077 19 6 5.5701 4.5326 -0.0483 20 1 5.4638 4.6894 1.0251 21 6 7.0482 4.6232 -0.4329 22 6 4.7925 5.5892 -0.7899 23 1 3.9934 5.3027 -1.4575 24 6 5.1006 6.9217 -0.6152 25 7 6.0733 7.2706 0.1981 26 14 4.1362 8.2314 -1.5339 27 1 2.7016 8.1430 -1.1605 28 1 4.6595 9.5741 -1.1755 29 1 4.2811 8.0184 -2.9964 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 5.3885 -0.7344 -0.2157 34 1 6.2069 -2.2173 1.5785 35 1 5.3587 -1.9533 3.8731 36 1 3.7299 -0.1866 4.3966 37 1 4.4598 2.8384 2.9113 38 1 2.8879 3.5447 3.3469 39 1 3.6952 4.4845 1.2290 40 1 2.2239 3.5261 0.9662 41 1 7.1426 4.6095 -1.5187 42 1 7.4689 5.5502 -0.0433 43 1 7.5862 3.7744 -0.0107 44 1 6.2903 8.2081 0.3207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884859013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:31 Heat of formation + Delta-G solvation = -125.248003 kcal Electronic energy + Delta-G solvation = -30709.799411 eV Core-core repulsion = 26592.933243 eV Total energy + Delta-G solvation = -4116.866168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59961 -40.93645 -40.40624 -38.56084 -37.76853 -36.37372 -35.95346 -33.68185 -32.27051 -31.69414 -29.74683 -29.43327 -27.85029 -27.23064 -24.97532 -24.29448 -23.45432 -22.86173 -21.79391 -20.28289 -19.42048 -18.74860 -18.42165 -18.29980 -17.84646 -17.46958 -17.13885 -16.85556 -16.52496 -16.19793 -15.97903 -15.70701 -15.21406 -14.98684 -14.75088 -14.63689 -14.56149 -14.18776 -13.66355 -13.59727 -13.40954 -13.16614 -13.14728 -12.92833 -12.84834 -12.81368 -12.61171 -12.53201 -12.24127 -12.13089 -12.09293 -11.85267 -11.52041 -11.23266 -11.14287 -10.69517 -10.45321 -9.92549 -9.76475 -9.53436 -8.19961 -6.34409 0.08851 0.30549 0.91881 1.29241 1.42179 1.43211 1.50800 1.76338 2.06167 2.40878 2.45558 3.00169 3.09812 3.34688 3.53231 3.72568 3.92374 4.00169 4.10678 4.18447 4.20869 4.26150 4.26693 4.29314 4.45340 4.48460 4.55930 4.63196 4.72192 4.76491 4.88740 4.93793 4.96114 5.05655 5.29898 5.34568 5.36490 5.41835 5.46650 5.49725 5.64802 5.77251 5.80841 6.06992 6.28388 6.40914 6.57414 6.67116 7.18192 7.34667 8.85630 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.004615 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.865338 B = 6065.628722 C = 6840.344327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.511 6.511 5 C 0.188 3.812 6 H 0.125 0.875 7 C -0.143 4.143 8 C -0.090 4.090 9 C -0.122 4.122 10 C -0.089 4.089 11 C -0.136 4.136 12 C 0.089 3.911 13 O -0.338 6.338 14 C 0.058 3.942 15 C 0.054 3.946 16 N -0.595 5.595 17 C 0.534 3.466 18 O -0.583 6.583 19 C 0.036 3.964 20 H 0.047 0.953 21 C -0.107 4.107 22 C -0.530 4.530 23 H 0.041 0.959 24 C 0.035 3.965 25 N -0.901 5.901 26 Si 0.954 3.046 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.280 1.280 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.062 0.938 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.022 0.978 42 H 0.072 0.928 43 H 0.024 0.976 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -17.339 8.643 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.399 6.399 5 C 0.083 3.917 6 H 0.143 0.857 7 C -0.145 4.145 8 C -0.108 4.108 9 C -0.140 4.140 10 C -0.107 4.107 11 C -0.155 4.155 12 C 0.045 3.955 13 O -0.255 6.255 14 C -0.017 4.017 15 C -0.068 4.068 16 N -0.328 5.328 17 C 0.327 3.673 18 O -0.463 6.463 19 C 0.015 3.985 20 H 0.064 0.936 21 C -0.165 4.165 22 C -0.568 4.568 23 H 0.059 0.941 24 C -0.167 4.167 25 N -0.538 5.538 26 Si 0.779 3.221 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.401 -17.201 8.299 20.142 hybrid contribution -0.533 1.266 -1.008 1.703 sum -6.933 -15.936 7.291 18.846 Atomic orbital electron populations 1.23586 0.74259 1.05909 1.02495 1.86481 1.25303 1.31548 1.83469 1.23465 0.91154 0.81951 0.71775 1.90532 1.67089 1.36563 1.45752 1.19411 0.87556 0.83951 1.00830 0.85714 1.20273 1.01551 0.99271 0.93385 1.21057 0.94944 0.93633 1.01201 1.21567 1.00442 0.99527 0.92442 1.21494 0.94929 0.96793 0.97510 1.21509 0.97861 0.97104 0.98996 1.18871 0.93164 0.91481 0.91961 1.86089 1.36503 1.14215 1.88727 1.23271 0.99694 0.82008 0.96752 1.22598 1.00159 0.96054 0.88024 1.47754 1.31743 1.11516 1.41761 1.21889 0.77701 0.88311 0.79439 1.90494 1.60669 1.63336 1.31828 1.18840 0.94498 0.87086 0.98068 0.93558 1.21429 0.95979 1.00136 0.98990 1.20765 1.17596 0.90984 1.27456 0.94062 1.25494 0.95759 0.99864 0.95546 1.69956 1.29362 1.18074 1.36436 0.85678 0.79246 0.78346 0.78820 1.19497 1.19929 1.20594 0.92014 0.84446 0.91998 0.84980 0.82282 0.81691 0.83364 0.91970 0.84557 0.87307 0.88306 0.95887 0.90953 0.95705 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.35 -10.29 10.29 -51.42 -0.53 -10.81 16 3 C 0.47 16.68 5.73 71.24 0.41 17.09 16 4 O -0.51 -20.11 13.18 21.95 0.29 -19.82 16 5 C 0.19 6.87 2.81 43.77 0.12 6.99 16 6 H 0.13 4.75 6.91 -2.39 -0.02 4.73 16 7 C -0.14 -4.45 4.82 -19.59 -0.09 -4.55 16 8 C -0.09 -2.35 9.71 22.18 0.22 -2.13 16 9 C -0.12 -2.35 10.06 22.33 0.22 -2.12 16 10 C -0.09 -1.56 10.02 22.25 0.22 -1.34 16 11 C -0.14 -3.01 10.00 22.39 0.22 -2.79 16 12 C 0.09 2.59 5.32 22.54 0.12 2.71 16 13 O -0.34 -10.46 8.97 -88.75 -0.80 -11.26 16 14 C 0.06 1.75 6.68 71.71 0.48 2.23 16 15 C 0.05 2.03 5.32 86.13 0.46 2.49 16 16 N -0.59 -24.59 2.48 -806.11 -2.00 -26.59 16 17 C 0.53 25.70 6.68 87.66 0.59 26.28 16 18 O -0.58 -30.20 15.68 -3.02 -0.05 -30.25 16 19 C 0.04 1.83 1.78 -12.28 -0.02 1.80 16 20 H 0.05 2.34 6.66 -2.39 -0.02 2.33 16 21 C -0.11 -5.43 8.28 71.98 0.60 -4.84 16 22 C -0.53 -28.99 7.79 25.60 0.20 -28.79 16 23 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 24 C 0.03 1.86 5.30 84.65 0.45 2.31 16 25 N -0.90 -48.70 11.42 21.45 0.24 -48.45 16 26 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.13 3.32 8.00 -2.91 -0.02 3.30 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 38 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.11 4.54 5.06 -2.39 -0.01 4.53 16 40 H 0.10 3.96 5.12 -2.39 -0.01 3.95 16 41 H 0.02 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.07 3.80 6.33 -2.39 -0.02 3.79 16 43 H 0.02 1.13 8.13 -2.38 -0.02 1.11 16 44 H 0.27 13.77 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -69.07 358.69 5.60 -63.47 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.03 Total: 21.63 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.39 Total: 17.19 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.75 Total: -75.04 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: -1.08 Total: -72.14 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.07 5.60 -63.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.783 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds