Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00005 * 2 1 4 4 O 1.20819 * 119.99879 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99841 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.58825 * 72.84188 * 5 3 2 7 7 C 1.51704 * 109.70567 * 312.48522 * 5 3 2 8 8 C 1.37589 * 120.91965 * 124.65899 * 7 5 3 9 9 C 1.38466 * 119.65773 * 181.79513 * 8 7 5 10 10 C 1.38287 * 119.90621 * 0.27089 * 9 8 7 11 11 C 1.38082 * 120.40118 * 359.05002 * 10 9 8 12 12 C 1.38753 * 118.18853 * 304.98032 * 7 5 3 13 13 O 1.35371 * 120.66720 * 355.58214 * 12 7 5 14 14 C 1.43294 * 115.71972 * 289.07340 * 13 12 7 15 15 C 1.52186 * 110.07606 * 89.04940 * 14 13 12 16 16 N 1.46358 * 111.19096 * 299.04960 * 15 14 13 17 17 C 1.34784 * 119.73661 * 243.97833 * 16 15 14 18 18 O 1.21277 * 120.00222 * 175.20352 * 17 16 15 19 19 C 1.50695 * 119.99318 * 355.20654 * 17 16 15 20 20 H 1.08997 * 109.47611 * 37.92395 * 19 17 16 21 21 C 1.53000 * 109.47197 * 277.91878 * 19 17 16 22 22 C 1.50703 * 109.47004 * 157.92117 * 19 17 16 23 23 H 1.08010 * 119.99571 * 0.02562 * 22 19 17 24 24 C 1.37873 * 120.00482 * 179.97438 * 22 19 17 25 25 N 1.31523 * 119.99773 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 120.00315 * 179.97438 * 24 22 19 27 27 H 1.48505 * 109.47069 * 90.00437 * 26 24 22 28 28 H 1.48503 * 109.47289 * 210.00160 * 26 24 22 29 29 H 1.48503 * 109.47312 * 330.00862 * 26 24 22 30 30 H 1.09002 * 109.47079 * 59.99339 * 1 2 3 31 31 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47110 * 299.99893 * 1 2 3 33 33 H 1.08003 * 120.17107 * 1.79180 * 8 7 5 34 34 H 1.08002 * 120.04498 * 180.23478 * 9 8 7 35 35 H 1.08003 * 119.79349 * 179.06918 * 10 9 8 36 36 H 1.08007 * 120.04279 * 179.87695 * 11 10 9 37 37 H 1.08997 * 109.37213 * 328.86222 * 14 13 12 38 38 H 1.08997 * 109.37058 * 209.23371 * 14 13 12 39 39 H 1.08996 * 109.13975 * 59.49121 * 15 14 13 40 40 H 1.08999 * 109.13617 * 178.60959 * 15 14 13 41 41 H 1.09000 * 109.46953 * 53.92524 * 21 19 17 42 42 H 1.09001 * 109.47298 * 173.92831 * 21 19 17 43 43 H 1.09002 * 109.47315 * 293.92521 * 21 19 17 44 44 H 0.96999 * 119.99746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9467 0.9916 -0.9820 7 6 4.1280 0.3381 1.0522 8 6 5.0500 -0.6276 0.7198 9 6 5.5176 -1.4929 1.6945 10 6 5.0523 -1.3857 2.9923 11 6 4.1375 -0.4075 3.3281 12 6 3.6816 0.4772 2.3586 13 8 2.8378 1.4803 2.6968 14 6 3.4061 2.7957 2.7025 15 6 3.2751 3.4273 1.3241 16 7 3.9870 2.6439 0.3133 17 6 5.0380 3.1852 -0.3340 18 8 5.6850 2.5127 -1.1085 19 6 5.4092 4.6261 -0.0951 20 1 5.2653 4.8686 0.9578 21 6 4.5216 5.5303 -0.9526 22 6 6.8536 4.8411 -0.4672 23 1 7.4437 4.0167 -0.8399 24 6 7.4216 6.0902 -0.3329 25 7 6.7030 7.0941 0.1204 26 14 9.2122 6.3564 -0.7935 27 1 9.3031 6.7422 -2.2247 28 1 9.7843 7.4381 0.0480 29 1 9.9729 5.1007 -0.5702 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 5.4072 -0.7103 -0.2961 34 1 6.2441 -2.2508 1.4413 35 1 5.4068 -2.0713 3.7478 36 1 3.7764 -0.3303 4.3432 37 1 4.4602 2.7329 2.9726 38 1 2.8835 3.4121 3.4338 39 1 2.2203 3.4830 1.0553 40 1 3.6893 4.4351 1.3520 41 1 3.4739 5.2984 -0.7611 42 1 4.7148 6.5732 -0.7012 43 1 4.7438 5.3636 -2.0067 44 1 7.1025 7.9729 0.2145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884859015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -104.306854 kcal Electronic energy + Delta-G solvation = -30614.946115 eV Core-core repulsion = 26498.988024 eV Total energy + Delta-G solvation = -4115.958091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33851 -39.75108 -38.83997 -37.46361 -36.52280 -34.88328 -33.96324 -32.43413 -30.64597 -30.34556 -28.52030 -28.35806 -26.56927 -25.20657 -23.65725 -22.66627 -22.37984 -21.71036 -20.55690 -18.93172 -18.11762 -17.31243 -16.99248 -16.66450 -16.37416 -16.01848 -15.75926 -15.52336 -15.06131 -14.95581 -14.67882 -14.24539 -13.95574 -13.74043 -13.46682 -13.39924 -13.00857 -12.65226 -12.49741 -12.29695 -12.10825 -11.93411 -11.75778 -11.69238 -11.35077 -11.09377 -11.00967 -10.77355 -10.69126 -10.67572 -10.31891 -10.25192 -10.08389 -10.02992 -9.05361 -8.98233 -8.69592 -8.51266 -8.36460 -8.27601 -6.08081 -4.11219 1.12242 1.31483 2.18483 2.55493 3.25543 3.31194 3.37190 3.42682 3.51306 3.64168 4.07327 4.42516 4.50577 4.73626 4.85486 5.02105 5.04882 5.13184 5.18807 5.23125 5.26625 5.27746 5.32853 5.39428 5.44907 5.50774 5.55289 5.82434 5.92272 6.03291 6.11039 6.28810 6.42342 6.47313 6.50974 6.63241 6.70748 6.76487 6.82120 6.94313 7.37114 7.49187 7.69969 7.77573 7.85402 8.00052 8.26877 8.93649 9.01455 9.53662 10.99775 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004402 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.920133 B = 6359.101626 C = 7178.211001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.489 6.489 5 C 0.195 3.805 6 H 0.136 0.864 7 C -0.120 4.120 8 C -0.072 4.072 9 C -0.129 4.129 10 C -0.101 4.101 11 C -0.137 4.137 12 C 0.113 3.887 13 O -0.331 6.331 14 C 0.049 3.951 15 C 0.052 3.948 16 N -0.605 5.605 17 C 0.529 3.471 18 O -0.537 6.537 19 C 0.036 3.964 20 H 0.050 0.950 21 C -0.130 4.130 22 C -0.502 4.502 23 H 0.071 0.929 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.900 3.100 27 H -0.280 1.280 28 H -0.287 1.287 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.016 0.984 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 -14.669 6.083 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.313 3.687 4 O -0.376 6.376 5 C 0.089 3.911 6 H 0.153 0.847 7 C -0.122 4.122 8 C -0.091 4.091 9 C -0.147 4.147 10 C -0.119 4.119 11 C -0.156 4.156 12 C 0.069 3.931 13 O -0.248 6.248 14 C -0.026 4.026 15 C -0.070 4.070 16 N -0.342 5.342 17 C 0.321 3.679 18 O -0.411 6.411 19 C 0.015 3.985 20 H 0.068 0.932 21 C -0.188 4.188 22 C -0.541 4.541 23 H 0.089 0.911 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.728 3.272 27 H -0.206 1.206 28 H -0.213 1.213 29 H -0.198 1.198 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.035 0.965 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.199 -14.508 5.733 18.638 hybrid contribution 0.828 0.341 -0.223 0.923 sum -9.371 -14.167 5.510 17.857 Atomic orbital electron populations 1.23230 0.76490 1.03422 1.02503 1.86511 1.23190 1.33042 1.84003 1.23599 0.91316 0.81602 0.72215 1.90531 1.66644 1.35779 1.44610 1.19313 0.86575 0.84746 1.00441 0.84665 1.20335 0.99742 0.98301 0.93828 1.20845 0.94654 0.93268 1.00320 1.21185 1.00654 0.99763 0.93074 1.21010 0.96616 0.97690 0.96605 1.21224 0.97919 0.97501 0.98926 1.18533 0.92199 0.91044 0.91369 1.86065 1.35854 1.14821 1.88073 1.23292 0.99643 0.81454 0.98248 1.22551 1.00992 0.96759 0.86747 1.48052 1.33162 1.11768 1.41176 1.22280 0.76491 0.91399 0.77738 1.90525 1.50658 1.63373 1.36588 1.18921 0.97427 0.84143 0.98032 0.93231 1.21722 0.94559 1.03560 0.98964 1.21065 0.93771 0.95854 1.43389 0.91108 1.24923 0.98313 0.95800 0.94959 1.69879 1.36126 1.01050 1.46263 0.86446 0.84520 0.77810 0.78404 1.20582 1.21252 1.19786 0.92034 0.88288 0.91814 0.84946 0.85471 0.85627 0.85380 0.91596 0.87289 0.87519 0.86597 0.96532 0.88949 0.94501 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.35 -4.98 10.25 -39.27 -0.40 -5.39 16 3 C 0.47 7.72 5.73 36.01 0.21 7.92 16 4 O -0.49 -8.71 13.27 -18.74 -0.25 -8.96 16 5 C 0.20 3.37 2.74 -69.67 -0.19 3.18 16 6 H 0.14 2.37 7.04 -51.93 -0.37 2.00 16 7 C -0.12 -1.89 4.80 -104.17 -0.50 -2.39 16 8 C -0.07 -1.02 9.72 -39.73 -0.39 -1.40 16 9 C -0.13 -1.51 10.06 -39.48 -0.40 -1.91 16 10 C -0.10 -1.13 10.02 -39.62 -0.40 -1.52 16 11 C -0.14 -1.74 10.00 -39.38 -0.39 -2.13 16 12 C 0.11 1.70 5.31 -39.13 -0.21 1.50 16 13 O -0.33 -5.09 8.96 -17.80 -0.16 -5.25 16 14 C 0.05 0.71 6.68 36.74 0.25 0.96 16 15 C 0.05 0.88 5.14 -4.53 -0.02 0.86 16 16 N -0.61 -11.60 2.46 -168.69 -0.42 -12.01 16 17 C 0.53 12.15 6.79 -10.98 -0.07 12.07 16 18 O -0.54 -13.59 15.20 5.56 0.08 -13.50 16 19 C 0.04 0.88 1.77 -92.92 -0.16 0.71 16 20 H 0.05 1.22 6.33 -51.93 -0.33 0.89 16 21 C -0.13 -3.07 8.63 37.16 0.32 -2.75 16 22 C -0.50 -13.98 8.34 -34.44 -0.29 -14.26 16 23 H 0.07 2.08 6.97 -52.48 -0.37 1.71 16 24 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -24.58 11.39 55.43 0.63 -23.94 16 26 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.13 1.75 8.01 -52.48 -0.42 1.33 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 38 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.11 1.84 5.16 -51.93 -0.27 1.57 16 40 H 0.12 2.02 4.96 -51.93 -0.26 1.76 16 41 H 0.02 0.33 7.60 -51.93 -0.39 -0.06 16 42 H 0.09 2.32 6.26 -51.93 -0.32 2.00 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -32.29 357.36 -7.07 -39.37 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.65 Total: 3.99 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.28 Total: 3.84 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.22 Total: -35.96 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.73 Total: -33.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.29 -7.07 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.940 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds