Wall clock time and date at job start Tue Mar 31 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00005 * 2 1 4 4 O 1.20819 * 119.99879 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99841 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.58825 * 72.84188 * 5 3 2 7 7 C 1.51704 * 109.70567 * 312.48522 * 5 3 2 8 8 C 1.37589 * 120.91965 * 124.65899 * 7 5 3 9 9 C 1.38466 * 119.65773 * 181.79513 * 8 7 5 10 10 C 1.38287 * 119.90621 * 0.27089 * 9 8 7 11 11 C 1.38082 * 120.40118 * 359.05002 * 10 9 8 12 12 C 1.38753 * 118.18853 * 304.98032 * 7 5 3 13 13 O 1.35371 * 120.66720 * 355.58214 * 12 7 5 14 14 C 1.43294 * 115.71972 * 289.07340 * 13 12 7 15 15 C 1.52186 * 110.07606 * 89.04940 * 14 13 12 16 16 N 1.46358 * 111.19096 * 299.04960 * 15 14 13 17 17 C 1.34784 * 119.73661 * 243.97833 * 16 15 14 18 18 O 1.21277 * 120.00222 * 175.20352 * 17 16 15 19 19 C 1.50695 * 119.99318 * 355.20654 * 17 16 15 20 20 H 1.08997 * 109.47611 * 37.92395 * 19 17 16 21 21 C 1.53000 * 109.47197 * 277.91878 * 19 17 16 22 22 C 1.50703 * 109.47004 * 157.92117 * 19 17 16 23 23 H 1.08010 * 119.99571 * 0.02562 * 22 19 17 24 24 C 1.37873 * 120.00482 * 179.97438 * 22 19 17 25 25 N 1.31523 * 119.99773 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 120.00315 * 179.97438 * 24 22 19 27 27 H 1.48505 * 109.47069 * 90.00437 * 26 24 22 28 28 H 1.48503 * 109.47289 * 210.00160 * 26 24 22 29 29 H 1.48503 * 109.47312 * 330.00862 * 26 24 22 30 30 H 1.09002 * 109.47079 * 59.99339 * 1 2 3 31 31 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47110 * 299.99893 * 1 2 3 33 33 H 1.08003 * 120.17107 * 1.79180 * 8 7 5 34 34 H 1.08002 * 120.04498 * 180.23478 * 9 8 7 35 35 H 1.08003 * 119.79349 * 179.06918 * 10 9 8 36 36 H 1.08007 * 120.04279 * 179.87695 * 11 10 9 37 37 H 1.08997 * 109.37213 * 328.86222 * 14 13 12 38 38 H 1.08997 * 109.37058 * 209.23371 * 14 13 12 39 39 H 1.08996 * 109.13975 * 59.49121 * 15 14 13 40 40 H 1.08999 * 109.13617 * 178.60959 * 15 14 13 41 41 H 1.09000 * 109.46953 * 53.92524 * 21 19 17 42 42 H 1.09001 * 109.47298 * 173.92831 * 21 19 17 43 43 H 1.09002 * 109.47315 * 293.92521 * 21 19 17 44 44 H 0.96999 * 119.99746 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9467 0.9916 -0.9820 7 6 4.1280 0.3381 1.0522 8 6 5.0500 -0.6276 0.7198 9 6 5.5176 -1.4929 1.6945 10 6 5.0523 -1.3857 2.9923 11 6 4.1375 -0.4075 3.3281 12 6 3.6816 0.4772 2.3586 13 8 2.8378 1.4803 2.6968 14 6 3.4061 2.7957 2.7025 15 6 3.2751 3.4273 1.3241 16 7 3.9870 2.6439 0.3133 17 6 5.0380 3.1852 -0.3340 18 8 5.6850 2.5127 -1.1085 19 6 5.4092 4.6261 -0.0951 20 1 5.2653 4.8686 0.9578 21 6 4.5216 5.5303 -0.9526 22 6 6.8536 4.8411 -0.4672 23 1 7.4437 4.0167 -0.8399 24 6 7.4216 6.0902 -0.3329 25 7 6.7030 7.0941 0.1204 26 14 9.2122 6.3564 -0.7935 27 1 9.3031 6.7422 -2.2247 28 1 9.7843 7.4381 0.0480 29 1 9.9729 5.1007 -0.5702 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 5.4072 -0.7103 -0.2961 34 1 6.2441 -2.2508 1.4413 35 1 5.4068 -2.0713 3.7478 36 1 3.7764 -0.3303 4.3432 37 1 4.4602 2.7329 2.9726 38 1 2.8835 3.4121 3.4338 39 1 2.2203 3.4830 1.0553 40 1 3.6893 4.4351 1.3520 41 1 3.4739 5.2984 -0.7611 42 1 4.7148 6.5732 -0.7012 43 1 4.7438 5.3636 -2.0067 44 1 7.1025 7.9729 0.2145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884859015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:34 Heat of formation + Delta-G solvation = -123.154890 kcal Electronic energy + Delta-G solvation = -30615.763427 eV Core-core repulsion = 26498.988024 eV Total energy + Delta-G solvation = -4116.775403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61652 -40.94476 -40.40364 -38.57295 -37.76533 -36.38369 -35.92702 -33.79011 -32.25330 -31.69351 -29.76370 -29.40873 -27.72707 -27.28345 -25.01635 -24.30181 -23.46042 -22.87055 -21.88047 -20.46927 -19.41322 -18.58578 -18.49446 -18.13643 -17.83278 -17.32906 -17.14313 -16.87783 -16.49828 -16.27936 -16.07489 -15.77269 -15.11396 -15.05161 -14.83858 -14.68531 -14.46343 -14.35254 -13.71566 -13.51629 -13.39810 -13.16371 -13.10099 -12.97943 -12.88283 -12.75383 -12.61988 -12.54389 -12.27895 -12.16302 -12.05440 -11.84266 -11.58490 -11.23454 -11.06967 -10.67797 -10.40108 -9.94130 -9.78958 -9.53835 -8.17283 -6.27478 0.08171 0.30426 0.89559 1.29457 1.40916 1.42197 1.52882 1.74363 2.05938 2.41007 2.45380 2.99595 3.12970 3.32966 3.53768 3.70759 3.90588 3.95944 4.07862 4.13820 4.18049 4.25097 4.27187 4.31218 4.44635 4.47227 4.54718 4.65067 4.65577 4.72620 4.82236 4.89343 4.94761 4.96418 5.22536 5.31564 5.34398 5.38818 5.44503 5.49176 5.67777 5.75296 5.85046 6.07230 6.34440 6.39479 6.56831 6.77534 7.21966 7.40756 8.89226 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004402 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.920133 B = 6359.101626 C = 7178.211001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.509 6.509 5 C 0.189 3.811 6 H 0.123 0.877 7 C -0.141 4.141 8 C -0.091 4.091 9 C -0.124 4.124 10 C -0.091 4.091 11 C -0.137 4.137 12 C 0.089 3.911 13 O -0.335 6.335 14 C 0.054 3.946 15 C 0.050 3.950 16 N -0.599 5.599 17 C 0.529 3.471 18 O -0.571 6.571 19 C 0.034 3.966 20 H 0.049 0.951 21 C -0.115 4.115 22 C -0.528 4.528 23 H 0.047 0.953 24 C 0.024 3.976 25 N -0.908 5.908 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.273 1.273 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.057 0.943 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.020 0.980 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 -16.275 7.802 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.320 3.680 4 O -0.398 6.398 5 C 0.084 3.916 6 H 0.141 0.859 7 C -0.143 4.143 8 C -0.109 4.109 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.156 4.156 12 C 0.045 3.955 13 O -0.252 6.252 14 C -0.021 4.021 15 C -0.072 4.072 16 N -0.333 5.333 17 C 0.321 3.679 18 O -0.449 6.449 19 C 0.013 3.987 20 H 0.066 0.934 21 C -0.173 4.173 22 C -0.567 4.567 23 H 0.065 0.935 24 C -0.175 4.175 25 N -0.547 5.547 26 Si 0.781 3.219 27 H -0.203 1.203 28 H -0.198 1.198 29 H -0.201 1.201 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.466 -16.134 7.480 20.635 hybrid contribution 0.821 0.729 -0.733 1.320 sum -9.645 -15.405 6.747 19.387 Atomic orbital electron populations 1.23595 0.74139 1.05893 1.02624 1.86490 1.25381 1.31545 1.83358 1.23319 0.90882 0.82006 0.71777 1.90513 1.66975 1.36486 1.45820 1.19397 0.87684 0.83800 1.00727 0.85907 1.20298 1.01234 0.98999 0.93784 1.21030 0.94800 0.93946 1.01149 1.21564 1.00423 0.99346 0.92835 1.21469 0.95151 0.97227 0.97085 1.21540 0.97694 0.96959 0.99367 1.18795 0.93202 0.91808 0.91667 1.86061 1.36290 1.14915 1.87935 1.23313 0.99788 0.81863 0.97140 1.22674 1.00396 0.96425 0.87703 1.47874 1.31989 1.12823 1.40643 1.21875 0.77388 0.90830 0.77839 1.90494 1.52216 1.63904 1.38262 1.18819 0.96267 0.85705 0.97878 0.93353 1.21526 0.95738 1.02390 0.97668 1.21175 0.95395 0.95673 1.44428 0.93476 1.25556 1.01864 0.95414 0.94701 1.69947 1.37357 1.01265 1.46110 0.85591 0.80226 0.77726 0.78319 1.20274 1.19837 1.20125 0.91782 0.84662 0.91868 0.85253 0.82539 0.81806 0.83290 0.92428 0.83980 0.87533 0.87489 0.94285 0.90418 0.96082 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.35 -9.73 10.25 -51.44 -0.53 -10.26 16 3 C 0.48 15.73 5.73 71.24 0.41 16.14 16 4 O -0.51 -18.22 13.27 21.98 0.29 -17.93 16 5 C 0.19 6.71 2.74 43.80 0.12 6.83 16 6 H 0.12 4.57 7.04 -2.39 -0.02 4.56 16 7 C -0.14 -4.45 4.80 -19.57 -0.09 -4.55 16 8 C -0.09 -2.51 9.72 22.17 0.22 -2.30 16 9 C -0.12 -2.60 10.06 22.34 0.22 -2.38 16 10 C -0.09 -1.71 10.02 22.24 0.22 -1.49 16 11 C -0.14 -3.11 10.00 22.40 0.22 -2.89 16 12 C 0.09 2.60 5.31 22.56 0.12 2.72 16 13 O -0.34 -9.92 8.96 -86.62 -0.78 -10.70 16 14 C 0.05 1.53 6.68 71.71 0.48 2.01 16 15 C 0.05 1.70 5.14 86.14 0.44 2.14 16 16 N -0.60 -23.60 2.46 -806.01 -1.99 -25.58 16 17 C 0.53 25.27 6.79 87.65 0.60 25.86 16 18 O -0.57 -30.31 15.20 -3.02 -0.05 -30.35 16 19 C 0.03 1.74 1.77 -12.29 -0.02 1.72 16 20 H 0.05 2.45 6.33 -2.39 -0.02 2.44 16 21 C -0.12 -5.58 8.63 71.98 0.62 -4.96 16 22 C -0.53 -30.30 8.34 25.60 0.21 -30.09 16 23 H 0.05 2.88 6.97 -2.91 -0.02 2.86 16 24 C 0.02 1.35 5.30 84.65 0.45 1.80 16 25 N -0.91 -50.16 11.39 21.45 0.24 -49.92 16 26 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 30 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 31 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.13 3.53 8.01 -2.91 -0.02 3.50 16 34 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.06 1.73 7.88 -2.39 -0.02 1.71 16 38 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.11 3.69 5.16 -2.39 -0.01 3.67 16 40 H 0.11 3.80 4.96 -2.39 -0.01 3.79 16 41 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 42 H 0.08 3.99 6.26 -2.39 -0.01 3.97 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -71.13 357.36 5.68 -65.46 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.03 Total: 20.60 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 5.42 Total: 12.34 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.74 Total: -75.51 kcal Atomic # 8 Polarization: -68.18 SS G_CDS: -1.06 Total: -69.24 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.13 5.68 -65.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884859015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.699 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds