Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.43849 * 2 1 4 4 C 1.54111 * 110.48664 * 122.54567 * 2 1 3 5 5 O 1.43743 * 107.29273 * 116.64626 * 4 2 1 6 6 C 1.44382 * 106.97521 * 26.51207 * 5 4 2 7 7 H 1.08999 * 110.61852 * 78.44208 * 6 5 4 8 8 C 1.50700 * 110.61755 * 201.43985 * 6 5 4 9 9 O 1.20824 * 119.99942 * 3.54522 * 8 6 5 10 10 O 1.34228 * 120.00391 * 183.54898 * 8 6 5 11 11 C 1.45197 * 117.00411 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47240 * 179.97438 * 11 10 8 13 13 O 1.21281 * 119.99875 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00140 * 180.02562 * 12 11 10 15 15 C 1.39236 * 120.00188 * 175.70963 * 14 12 11 16 16 C 1.39484 * 119.83389 * 215.01480 * 15 14 12 17 17 C 1.36378 * 120.16660 * 179.71345 * 16 15 14 18 18 C 1.40864 * 119.82895 * 0.57585 * 17 16 15 19 19 C 1.41150 * 120.16328 * 179.67419 * 18 17 16 20 20 H 1.08003 * 120.00318 * 214.80316 * 19 18 17 21 21 C 1.39901 * 120.00162 * 34.80348 * 19 18 17 22 22 N 1.30879 * 119.99991 * 355.56059 * 21 19 18 23 23 Si 1.86802 * 120.00148 * 175.55979 * 21 19 18 24 24 H 1.48501 * 109.47212 * 60.00141 * 23 21 19 25 25 H 1.48499 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47077 * 299.99847 * 23 21 19 27 27 C 1.40869 * 119.67631 * 359.70056 * 18 17 16 28 28 C 1.36379 * 119.82569 * 359.97438 * 27 18 17 29 29 C 1.54814 * 110.48841 * 237.31001 * 2 1 3 30 30 H 1.09003 * 109.47341 * 298.90657 * 1 2 3 31 31 H 1.08999 * 109.47143 * 178.91057 * 1 2 3 32 32 H 1.08993 * 109.47152 * 58.90717 * 1 2 3 33 33 H 1.08996 * 109.87384 * 236.06910 * 4 2 1 34 34 H 1.08995 * 109.87814 * 357.07047 * 4 2 1 35 35 H 1.09004 * 109.47168 * 299.99664 * 11 10 8 36 36 H 1.09004 * 109.47240 * 59.99844 * 11 10 8 37 37 H 0.97001 * 119.99689 * 355.70311 * 14 12 11 38 38 H 1.08000 * 119.91254 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.08026 * 180.25412 * 17 16 15 40 40 H 0.96994 * 119.99601 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.09235 * 179.97438 * 27 18 17 42 42 H 1.07999 * 119.92053 * 180.02562 * 28 27 18 43 43 H 1.09001 * 110.90497 * 338.64303 * 29 2 1 44 44 H 1.08997 * 110.90276 * 102.24205 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0693 -0.7766 1.2169 5 8 2.7955 -1.9101 0.7128 6 6 3.2659 -1.5569 -0.6057 7 1 4.1456 -0.9165 -0.5406 8 6 3.5672 -2.7946 -1.4109 9 8 3.3421 -3.8871 -0.9464 10 8 4.0858 -2.6835 -2.6440 11 6 4.3511 -3.9178 -3.3613 12 6 4.9260 -3.5973 -4.7169 13 8 5.0950 -2.4424 -5.0463 14 7 5.2514 -4.5941 -5.5637 15 6 5.6984 -4.2979 -6.8487 16 6 5.3594 -5.1353 -7.9114 17 6 5.7886 -4.8485 -9.1737 18 6 6.5863 -3.7099 -9.4008 19 6 7.0401 -3.4101 -10.7033 20 1 8.0127 -2.9629 -10.8468 21 6 6.2302 -3.6924 -11.8086 22 7 5.0899 -4.3129 -11.6428 23 14 6.7762 -3.1834 -13.5210 24 1 8.0673 -3.8418 -13.8450 25 1 5.7483 -3.5944 -14.5108 26 1 6.9467 -1.7090 -13.5684 27 6 6.9294 -2.8721 -8.3215 28 6 6.4872 -3.1682 -7.0658 29 6 2.0719 -0.7832 -1.2205 30 1 -0.3634 0.4968 0.8996 31 1 -0.3633 -1.0275 -0.0195 32 1 -0.3633 0.5307 -0.8800 33 1 2.7350 -0.1387 1.7983 34 1 1.2401 -1.1120 1.8398 35 1 5.0635 -4.5199 -2.7972 36 1 3.4217 -4.4740 -3.4834 37 1 5.1743 -5.5178 -5.2778 38 1 4.7513 -6.0102 -7.7350 39 1 5.5219 -5.4955 -9.9963 40 1 4.5282 -4.5082 -12.4090 41 1 7.5410 -1.9977 -8.4879 42 1 6.7489 -2.5267 -6.2373 43 1 1.3196 -1.4714 -1.6062 44 1 2.4102 -0.1017 -2.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885564708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = -140.393746 kcal Electronic energy + Delta-G solvation = -27227.090946 eV Core-core repulsion = 23109.568010 eV Total energy + Delta-G solvation = -4117.522936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.08838 -39.91407 -39.28247 -37.36043 -36.45047 -34.50547 -34.01775 -33.01580 -31.24768 -29.79097 -29.48265 -28.12270 -26.81005 -25.05559 -24.30309 -21.82929 -21.30151 -20.88642 -20.71797 -19.82311 -18.26583 -17.63085 -17.32920 -17.18065 -16.64513 -16.39202 -16.13362 -15.55830 -15.20684 -14.98209 -14.77097 -14.28400 -14.00025 -13.82794 -13.31528 -13.21759 -13.11252 -12.86602 -12.71442 -12.64818 -12.18909 -12.11190 -11.75845 -11.68178 -11.47767 -11.41374 -11.24322 -11.18399 -11.08745 -10.92288 -10.76413 -10.63328 -10.15502 -10.08326 -9.54260 -9.51098 -9.19562 -8.94712 -7.59499 -6.93003 -6.65552 -4.38431 1.84786 1.91632 2.44427 2.95059 3.05234 3.07515 3.09993 3.24133 3.41555 3.66273 3.95225 3.98336 4.24244 4.30820 4.53115 4.59939 4.65251 4.68391 4.81422 4.94722 4.97703 4.98268 5.15656 5.20143 5.27714 5.40542 5.52924 5.56879 5.60815 5.75711 6.04913 6.14900 6.26210 6.38922 6.66603 6.84844 7.01867 7.14160 7.24474 7.45871 7.59127 7.66865 7.80146 8.01547 8.16425 8.26876 8.54315 8.63348 8.88736 8.94669 10.25428 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.001898 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.495638 B =14751.578135 C =15270.507967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 H 0.091 0.909 4 C 0.048 3.952 5 O -0.351 6.351 6 C 0.089 3.911 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.489 6.489 10 O -0.325 6.325 11 C 0.052 3.948 12 C 0.499 3.501 13 O -0.509 6.509 14 N -0.645 5.645 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.101 3.899 19 C -0.460 4.460 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.811 5.811 23 Si 0.917 3.083 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.206 4.206 28 C -0.084 4.084 29 C -0.139 4.139 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.398 0.602 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 4.321 19.733 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 H 0.110 0.890 4 C -0.028 4.028 5 O -0.269 6.269 6 C 0.030 3.970 7 H 0.131 0.869 8 C 0.308 3.692 9 O -0.375 6.375 10 O -0.240 6.240 11 C -0.025 4.025 12 C 0.284 3.716 13 O -0.383 6.383 14 N -0.289 5.289 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.099 3.901 19 C -0.490 4.490 20 H 0.094 0.906 21 C -0.146 4.146 22 N -0.438 5.438 23 Si 0.742 3.258 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.226 4.226 28 C -0.104 4.104 29 C -0.176 4.176 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.322 4.524 19.598 21.404 hybrid contribution -0.043 -0.244 -0.686 0.729 sum -7.365 4.280 18.912 20.742 Atomic orbital electron populations 1.21840 0.93426 1.02560 1.02403 1.22571 0.97608 1.00338 0.94046 0.89038 1.23404 0.95964 0.87490 0.95951 1.88984 1.72189 1.37647 1.28122 1.22464 0.99867 0.90874 0.83782 0.86890 1.23180 0.74419 0.91062 0.80526 1.90697 1.47913 1.28620 1.70239 1.86519 1.74070 1.35671 1.27767 1.22771 1.02896 0.85111 0.91747 1.19894 0.79837 0.86413 0.85459 1.90736 1.52077 1.19682 1.75847 1.42775 1.64747 1.08452 1.12947 1.17221 1.07367 1.02420 0.82192 1.20313 1.01492 0.99196 0.92776 1.21197 1.02159 0.98248 0.94577 1.17741 0.90467 0.89398 0.92542 1.19481 1.03054 1.36014 0.90481 0.90565 1.25896 0.94335 0.93100 1.01283 1.69751 1.09809 1.31490 1.32720 0.86230 0.79096 0.79973 0.80541 1.19023 1.20422 1.19068 1.20809 1.07901 1.00820 0.93035 1.20407 0.96548 0.96240 0.97189 1.23219 0.96346 0.99491 0.98585 0.92063 0.92073 0.91882 0.91597 0.88990 0.88200 0.88112 0.76814 0.88951 0.84947 0.91026 0.88486 0.87420 0.89599 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.92 37.16 0.33 -0.44 16 2 C -0.13 -0.76 3.65 -89.08 -0.32 -1.09 16 3 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.05 0.34 7.37 37.74 0.28 0.61 16 5 O -0.35 -3.84 10.80 -54.33 -0.59 -4.43 16 6 C 0.09 0.88 3.88 -26.83 -0.10 0.78 16 7 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 8 C 0.47 6.03 7.32 36.01 0.26 6.29 16 9 O -0.49 -7.49 16.32 -25.24 -0.41 -7.90 16 10 O -0.32 -4.51 9.75 -45.90 -0.45 -4.95 16 11 C 0.05 0.67 5.95 36.00 0.21 0.88 16 12 C 0.50 8.48 7.74 -10.99 -0.09 8.39 16 13 O -0.51 -10.84 13.92 -14.11 -0.20 -11.03 16 14 N -0.64 -10.82 5.30 -9.74 -0.05 -10.87 16 15 C 0.00 0.00 6.31 -83.57 -0.53 -0.53 16 16 C -0.12 -2.61 9.90 -39.79 -0.39 -3.01 16 17 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 18 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 19 C -0.46 -12.10 9.02 -37.86 -0.34 -12.44 16 20 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 21 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 22 N -0.81 -20.82 10.60 55.55 0.59 -20.24 16 23 Si 0.92 18.79 29.56 -169.99 -5.03 13.76 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 28 C -0.08 -1.98 8.61 -39.79 -0.34 -2.32 16 29 C -0.14 -1.11 6.13 -24.72 -0.15 -1.26 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.55 7.69 -51.93 -0.40 0.15 16 35 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 36 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.40 5.03 8.82 -40.82 -0.36 4.67 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 3.45 6.13 -52.48 -0.32 3.13 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.11 2.50 6.22 -52.49 -0.33 2.17 16 43 H 0.09 0.75 7.77 -51.93 -0.40 0.34 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -32.76 373.84 -9.09 -41.86 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.01 Total: 8.02 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.59 Total: -9.85 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.54 Total: -31.11 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.64 Total: -28.32 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -9.09 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885564708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.538 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds