Wall clock time and date at job start Tue Mar 31 2020 17:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.43849 * 2 1 4 4 C 1.54111 * 110.48664 * 122.54567 * 2 1 3 5 5 O 1.43743 * 107.29273 * 116.64626 * 4 2 1 6 6 C 1.44382 * 106.97521 * 26.51207 * 5 4 2 7 7 H 1.08999 * 110.61852 * 78.44208 * 6 5 4 8 8 C 1.50700 * 110.61755 * 201.43985 * 6 5 4 9 9 O 1.20824 * 119.99942 * 3.54522 * 8 6 5 10 10 O 1.34228 * 120.00391 * 183.54898 * 8 6 5 11 11 C 1.45197 * 117.00411 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47240 * 179.97438 * 11 10 8 13 13 O 1.21281 * 119.99875 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00140 * 180.02562 * 12 11 10 15 15 C 1.39236 * 120.00188 * 175.70963 * 14 12 11 16 16 C 1.39484 * 119.83389 * 215.01480 * 15 14 12 17 17 C 1.36378 * 120.16660 * 179.71345 * 16 15 14 18 18 C 1.40864 * 119.82895 * 0.57585 * 17 16 15 19 19 C 1.41150 * 120.16328 * 179.67419 * 18 17 16 20 20 H 1.08003 * 120.00318 * 214.80316 * 19 18 17 21 21 C 1.39901 * 120.00162 * 34.80348 * 19 18 17 22 22 N 1.30879 * 119.99991 * 355.56059 * 21 19 18 23 23 Si 1.86802 * 120.00148 * 175.55979 * 21 19 18 24 24 H 1.48501 * 109.47212 * 60.00141 * 23 21 19 25 25 H 1.48499 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47077 * 299.99847 * 23 21 19 27 27 C 1.40869 * 119.67631 * 359.70056 * 18 17 16 28 28 C 1.36379 * 119.82569 * 359.97438 * 27 18 17 29 29 C 1.54814 * 110.48841 * 237.31001 * 2 1 3 30 30 H 1.09003 * 109.47341 * 298.90657 * 1 2 3 31 31 H 1.08999 * 109.47143 * 178.91057 * 1 2 3 32 32 H 1.08993 * 109.47152 * 58.90717 * 1 2 3 33 33 H 1.08996 * 109.87384 * 236.06910 * 4 2 1 34 34 H 1.08995 * 109.87814 * 357.07047 * 4 2 1 35 35 H 1.09004 * 109.47168 * 299.99664 * 11 10 8 36 36 H 1.09004 * 109.47240 * 59.99844 * 11 10 8 37 37 H 0.97001 * 119.99689 * 355.70311 * 14 12 11 38 38 H 1.08000 * 119.91254 * 0.02562 * 16 15 14 39 39 H 1.08003 * 120.08026 * 180.25412 * 17 16 15 40 40 H 0.96994 * 119.99601 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.09235 * 179.97438 * 27 18 17 42 42 H 1.07999 * 119.92053 * 180.02562 * 28 27 18 43 43 H 1.09001 * 110.90497 * 338.64303 * 29 2 1 44 44 H 1.08997 * 110.90276 * 102.24205 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0693 -0.7766 1.2169 5 8 2.7955 -1.9101 0.7128 6 6 3.2659 -1.5569 -0.6057 7 1 4.1456 -0.9165 -0.5406 8 6 3.5672 -2.7946 -1.4109 9 8 3.3421 -3.8871 -0.9464 10 8 4.0858 -2.6835 -2.6440 11 6 4.3511 -3.9178 -3.3613 12 6 4.9260 -3.5973 -4.7169 13 8 5.0950 -2.4424 -5.0463 14 7 5.2514 -4.5941 -5.5637 15 6 5.6984 -4.2979 -6.8487 16 6 5.3594 -5.1353 -7.9114 17 6 5.7886 -4.8485 -9.1737 18 6 6.5863 -3.7099 -9.4008 19 6 7.0401 -3.4101 -10.7033 20 1 8.0127 -2.9629 -10.8468 21 6 6.2302 -3.6924 -11.8086 22 7 5.0899 -4.3129 -11.6428 23 14 6.7762 -3.1834 -13.5210 24 1 8.0673 -3.8418 -13.8450 25 1 5.7483 -3.5944 -14.5108 26 1 6.9467 -1.7090 -13.5684 27 6 6.9294 -2.8721 -8.3215 28 6 6.4872 -3.1682 -7.0658 29 6 2.0719 -0.7832 -1.2205 30 1 -0.3634 0.4968 0.8996 31 1 -0.3633 -1.0275 -0.0195 32 1 -0.3633 0.5307 -0.8800 33 1 2.7350 -0.1387 1.7983 34 1 1.2401 -1.1120 1.8398 35 1 5.0635 -4.5199 -2.7972 36 1 3.4217 -4.4740 -3.4834 37 1 5.1743 -5.5178 -5.2778 38 1 4.7513 -6.0102 -7.7350 39 1 5.5219 -5.4955 -9.9963 40 1 4.5282 -4.5082 -12.4090 41 1 7.5410 -1.9977 -8.4879 42 1 6.7489 -2.5267 -6.2373 43 1 1.3196 -1.4714 -1.6062 44 1 2.4102 -0.1017 -2.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885564708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:56 Heat of formation + Delta-G solvation = -159.201096 kcal Electronic energy + Delta-G solvation = -27227.906494 eV Core-core repulsion = 23109.568010 eV Total energy + Delta-G solvation = -4118.338484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07213 -41.20583 -40.24576 -39.06536 -37.58530 -36.19201 -34.77764 -34.59064 -32.08686 -31.51813 -31.12156 -29.51981 -27.31494 -26.66895 -25.24767 -23.49696 -22.72289 -22.07508 -21.42974 -21.32998 -19.31880 -19.17160 -18.85329 -18.11461 -17.77301 -17.48099 -17.37189 -16.99523 -16.27358 -16.22499 -15.76918 -15.65636 -15.13152 -14.96617 -14.76745 -14.47491 -14.16277 -13.96367 -13.88024 -13.67039 -13.60408 -13.49746 -13.24909 -12.90875 -12.87852 -12.76995 -12.48563 -12.24720 -12.01534 -11.99921 -11.80704 -11.72157 -11.51631 -11.40641 -11.24284 -10.87988 -10.78886 -10.65291 -9.47913 -8.76930 -8.51282 -6.34150 0.72636 0.88916 0.94634 1.12978 1.40149 1.42569 1.51608 1.66446 2.22513 2.25976 2.79349 2.91097 3.31414 3.48609 3.55714 3.68505 3.75817 3.86350 3.98755 3.99903 4.02815 4.13838 4.39157 4.51496 4.54349 4.63085 4.73030 4.81164 4.88041 4.91885 5.00563 5.06346 5.11312 5.13429 5.13475 5.30949 5.33944 5.40657 5.65469 5.68664 5.87591 5.99077 6.11752 6.37517 6.46010 6.60757 6.67292 6.95937 6.97624 7.24352 8.41215 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.001898 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.495638 B =14751.578135 C =15270.507967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.111 0.889 4 C 0.042 3.958 5 O -0.380 6.380 6 C 0.087 3.913 7 H 0.135 0.865 8 C 0.470 3.530 9 O -0.517 6.517 10 O -0.338 6.338 11 C 0.058 3.942 12 C 0.503 3.497 13 O -0.554 6.554 14 N -0.635 5.635 15 C 0.017 3.983 16 C -0.115 4.115 17 C -0.160 4.160 18 C 0.068 3.932 19 C -0.497 4.497 20 H 0.073 0.927 21 C 0.027 3.973 22 N -0.840 5.840 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.268 1.268 26 H -0.265 1.265 27 C -0.221 4.221 28 C -0.096 4.096 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.422 0.578 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 4.512 21.015 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 H 0.129 0.871 4 C -0.034 4.034 5 O -0.300 6.300 6 C 0.028 3.972 7 H 0.152 0.848 8 C 0.313 3.687 9 O -0.405 6.405 10 O -0.254 6.254 11 C -0.018 4.018 12 C 0.290 3.710 13 O -0.432 6.432 14 N -0.282 5.282 15 C -0.076 4.076 16 C -0.135 4.135 17 C -0.180 4.180 18 C 0.066 3.934 19 C -0.527 4.527 20 H 0.092 0.908 21 C -0.185 4.185 22 N -0.467 5.467 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.193 1.193 26 H -0.190 1.190 27 C -0.241 4.241 28 C -0.116 4.116 29 C -0.176 4.176 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.147 4.683 20.923 22.936 hybrid contribution 0.161 -0.319 -0.884 0.953 sum -7.986 4.364 20.039 22.008 Atomic orbital electron populations 1.21845 0.93004 1.02081 1.03262 1.22582 0.97903 1.00845 0.92460 0.87053 1.23641 0.96383 0.86907 0.96422 1.88951 1.72869 1.39696 1.28447 1.22681 1.01385 0.89672 0.83427 0.84813 1.23780 0.73266 0.91736 0.79951 1.90677 1.49261 1.29868 1.70662 1.86514 1.74267 1.36210 1.28382 1.22759 1.04468 0.85203 0.89384 1.20560 0.78466 0.85477 0.86537 1.90724 1.53786 1.21644 1.77003 1.42639 1.64258 1.10067 1.11214 1.17256 1.05274 1.00871 0.84172 1.20568 1.00975 1.00204 0.91710 1.21186 1.03091 0.98125 0.95620 1.18061 0.91784 0.90402 0.93192 1.19712 1.03667 1.37852 0.91486 0.90842 1.26745 0.94119 0.92681 1.04937 1.69815 1.10665 1.32184 1.34072 0.85155 0.79029 0.79392 0.75501 1.18240 1.19275 1.18999 1.20932 1.08474 1.01032 0.93636 1.20533 0.97154 0.97227 0.96644 1.23252 0.95412 0.99389 0.99585 0.90599 0.93203 0.91680 0.89797 0.88356 0.85420 0.85716 0.73986 0.85464 0.86247 0.90425 0.88498 0.87278 0.90759 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.92 71.98 0.64 -0.63 16 2 C -0.12 -1.17 3.65 -9.80 -0.04 -1.21 16 3 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 4 C 0.04 0.50 7.37 72.36 0.53 1.03 16 5 O -0.38 -7.84 10.80 -130.72 -1.41 -9.25 16 6 C 0.09 1.60 3.88 30.53 0.12 1.72 16 7 H 0.13 1.86 8.14 -2.39 -0.02 1.85 16 8 C 0.47 11.50 7.32 71.24 0.52 12.03 16 9 O -0.52 -15.20 16.32 28.17 0.46 -14.74 16 10 O -0.34 -8.83 9.75 -45.04 -0.44 -9.27 16 11 C 0.06 1.36 5.95 71.23 0.42 1.78 16 12 C 0.50 16.14 7.74 87.66 0.68 16.82 16 13 O -0.55 -23.24 13.92 15.77 0.22 -23.02 16 14 N -0.63 -19.86 5.30 -303.11 -1.61 -21.47 16 15 C 0.02 0.74 6.31 38.57 0.24 0.98 16 16 C -0.11 -4.99 9.90 22.14 0.22 -4.77 16 17 C -0.16 -8.23 8.61 22.48 0.19 -8.04 16 18 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 19 C -0.50 -27.07 9.02 23.39 0.21 -26.86 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 21 C 0.03 1.39 5.42 85.24 0.46 1.85 16 22 N -0.84 -43.93 10.60 21.82 0.23 -43.70 16 23 Si 0.99 38.82 29.56 68.60 2.03 40.85 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 27 C -0.22 -11.38 9.74 22.48 0.22 -11.16 16 28 C -0.10 -4.53 8.61 22.14 0.19 -4.34 16 29 C -0.14 -2.01 6.13 31.90 0.20 -1.81 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.55 8.13 -2.39 -0.02 0.53 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 1.01 7.69 -2.39 -0.02 0.99 16 35 H 0.13 2.32 8.13 -2.38 -0.02 2.30 16 36 H 0.13 2.36 8.13 -2.38 -0.02 2.34 16 37 H 0.42 9.25 8.82 -92.71 -0.82 8.44 16 38 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.12 6.40 6.13 -2.91 -0.02 6.38 16 40 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 41 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.11 5.11 6.22 -2.91 -0.02 5.09 16 43 H 0.07 1.23 7.77 -2.39 -0.02 1.22 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -73.12 373.84 4.39 -68.73 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.22 Total: 30.88 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.70 Total: -19.00 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.38 Total: -65.17 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -1.17 Total: -56.28 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -73.12 4.39 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885564708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.473 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds