Wall clock time and date at job start Tue Mar 31 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.45647 * 2 1 4 4 C 1.54486 * 110.50925 * 237.39696 * 2 1 3 5 5 O 1.44422 * 104.79978 * 217.37801 * 4 2 1 6 6 C 1.44423 * 105.27803 * 40.51379 * 5 4 2 7 7 H 1.08991 * 110.37758 * 78.31878 * 6 5 4 8 8 C 1.50707 * 110.37186 * 200.54905 * 6 5 4 9 9 O 1.20824 * 119.99917 * 2.04535 * 8 6 5 10 10 O 1.34226 * 119.99951 * 182.04932 * 8 6 5 11 11 C 1.45200 * 117.00115 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.47238 * 179.97438 * 11 10 8 13 13 O 1.21277 * 119.99820 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99701 * 179.97438 * 12 11 10 15 15 C 1.37136 * 120.00229 * 354.95800 * 14 12 11 16 16 H 1.07998 * 120.00144 * 344.73227 * 15 14 12 17 17 C 1.38891 * 120.00233 * 164.74169 * 15 14 12 18 18 N 1.31428 * 119.99434 * 343.61802 * 17 15 14 19 19 Si 1.86797 * 120.00396 * 163.62030 * 17 15 14 20 20 H 1.48498 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47050 * 119.99479 * 19 17 15 22 22 H 1.48501 * 109.47096 * 239.99839 * 19 17 15 23 23 C 1.39788 * 119.99738 * 174.95157 * 14 12 11 24 24 C 1.38963 * 120.07476 * 101.20631 * 23 14 12 25 25 C 1.38082 * 119.91827 * 179.79015 * 24 23 14 26 26 C 1.38309 * 120.08155 * 0.46626 * 25 24 23 27 27 C 1.38307 * 120.15170 * 359.79510 * 26 25 24 28 28 C 1.38082 * 120.08084 * 359.97030 * 27 26 25 29 29 C 1.54479 * 104.90090 * 319.43026 * 6 5 4 30 30 H 1.09006 * 109.47266 * 181.14937 * 1 2 3 31 31 H 1.08998 * 109.47171 * 301.15069 * 1 2 3 32 32 H 1.09001 * 109.47073 * 61.15287 * 1 2 3 33 33 H 1.08994 * 110.37166 * 98.54471 * 4 2 1 34 34 H 1.09004 * 110.37137 * 336.20708 * 4 2 1 35 35 H 1.08999 * 109.47026 * 299.99869 * 11 10 8 36 36 H 1.09004 * 109.46816 * 59.99478 * 11 10 8 37 37 H 0.97002 * 119.99523 * 185.01686 * 18 17 15 38 38 H 1.08001 * 120.04065 * 0.02917 * 24 23 14 39 39 H 1.08004 * 119.96108 * 180.23269 * 25 24 23 40 40 H 1.07995 * 119.92326 * 179.75986 * 26 25 24 41 41 H 1.08002 * 119.95570 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.03755 * 180.02562 * 28 27 26 43 43 H 1.08994 * 110.51635 * 142.67799 * 29 6 5 44 44 H 1.09004 * 110.51253 * 265.39713 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7796 -1.2189 5 8 3.2398 -1.4704 -0.7258 6 6 2.8757 -1.9430 0.5894 7 1 2.2563 -2.8367 0.5136 8 6 4.1106 -2.2294 1.4045 9 8 5.2048 -2.0178 0.9380 10 8 3.9948 -2.7196 2.6487 11 6 5.2264 -2.9720 3.3751 12 6 4.9008 -3.5152 4.7425 13 8 3.7446 -3.6736 5.0725 14 7 5.8946 -3.8250 5.5986 15 6 7.2013 -3.7443 5.1905 16 1 7.4353 -3.6770 4.1383 17 6 8.2240 -3.7494 6.1303 18 7 7.9561 -3.5081 7.3942 19 14 9.9800 -4.0992 5.5980 20 1 10.0148 -4.3379 4.1327 21 1 10.8394 -2.9347 5.9308 22 1 10.4817 -5.3035 6.3073 23 6 5.5933 -4.2284 6.9027 24 6 5.6288 -5.5759 7.2406 25 6 5.3348 -5.9704 8.5307 26 6 4.9958 -5.0272 9.4839 27 6 4.9542 -3.6857 9.1497 28 6 5.2517 -3.2836 7.8626 29 6 2.0723 -0.7839 1.2198 30 1 -0.3634 -1.0275 0.0206 31 1 -0.3633 0.5316 0.8795 32 1 -0.3633 0.4958 -0.9001 33 1 2.3464 -0.0912 -2.0179 34 1 1.3285 -1.4949 -1.5722 35 1 5.8280 -3.6985 2.8289 36 1 5.7849 -2.0415 3.4776 37 1 8.6781 -3.4395 8.0384 38 1 5.8899 -6.3133 6.4959 39 1 5.3659 -7.0171 8.7950 40 1 4.7626 -5.3389 10.4912 41 1 4.6887 -2.9519 9.8963 42 1 5.2193 -2.2359 7.6026 43 1 1.2510 -1.1717 1.8223 44 1 2.7238 -0.1510 1.8223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885565905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:10 Heat of formation + Delta-G solvation = -136.835449 kcal Electronic energy + Delta-G solvation = -28528.864777 eV Core-core repulsion = 24411.496140 eV Total energy + Delta-G solvation = -4117.368637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01552 -41.18924 -40.22857 -38.99871 -37.52718 -36.64400 -34.59180 -33.67884 -32.03370 -31.57970 -31.09893 -29.03197 -27.20234 -26.92662 -25.32422 -23.44110 -23.22178 -22.04475 -21.46462 -21.26526 -19.73306 -19.19463 -18.11095 -17.99955 -17.67491 -17.28161 -16.82944 -16.58119 -16.36061 -16.23711 -16.08069 -15.72292 -15.13117 -15.11598 -14.87438 -14.52446 -14.11895 -13.96494 -13.87557 -13.82372 -13.40566 -13.26731 -13.19531 -12.91965 -12.84174 -12.74107 -12.29580 -12.24581 -12.08235 -12.01574 -11.91266 -11.85354 -11.67841 -11.44399 -11.32088 -10.95578 -10.62006 -10.08635 -9.58269 -9.36464 -8.18582 -6.06592 0.73235 0.79771 0.93210 1.08678 1.32439 1.44581 1.55736 1.73256 2.21222 2.65841 2.97565 3.00771 3.21153 3.36266 3.53459 3.74590 3.82615 3.92986 4.04198 4.10507 4.14980 4.20456 4.23871 4.28689 4.39462 4.52321 4.63599 4.74342 4.74814 4.80042 4.84892 4.89568 5.05440 5.08804 5.17789 5.22298 5.32423 5.35033 5.36572 5.60981 5.61329 5.75964 5.79225 5.98088 6.19807 6.46339 6.55458 6.97192 7.32482 7.74801 8.63065 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003072 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.945600 B = 9113.538427 C =10515.727605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.090 0.910 4 C 0.041 3.959 5 O -0.379 6.379 6 C 0.091 3.909 7 H 0.134 0.866 8 C 0.460 3.540 9 O -0.524 6.524 10 O -0.337 6.337 11 C 0.083 3.917 12 C 0.452 3.548 13 O -0.608 6.608 14 N -0.410 5.410 15 C -0.383 4.383 16 H 0.111 0.889 17 C 0.013 3.987 18 N -0.860 5.860 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.207 3.793 24 C -0.147 4.147 25 C -0.119 4.119 26 C -0.137 4.137 27 C -0.120 4.120 28 C -0.093 4.093 29 C -0.139 4.139 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.274 0.726 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 3.548 -7.858 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 H 0.108 0.892 4 C -0.034 4.034 5 O -0.298 6.298 6 C 0.033 3.967 7 H 0.152 0.848 8 C 0.303 3.697 9 O -0.412 6.412 10 O -0.252 6.252 11 C 0.007 3.993 12 C 0.242 3.758 13 O -0.494 6.494 14 N -0.127 5.127 15 C -0.508 4.508 16 H 0.128 0.872 17 C -0.194 4.194 18 N -0.494 5.494 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.203 1.203 23 C 0.117 3.883 24 C -0.167 4.167 25 C -0.137 4.137 26 C -0.155 4.155 27 C -0.138 4.138 28 C -0.113 4.113 29 C -0.176 4.176 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.637 3.460 -7.720 13.591 hybrid contribution 1.565 0.071 -0.085 1.569 sum -9.072 3.531 -7.805 12.477 Atomic orbital electron populations 1.21815 0.91681 1.03073 1.03205 1.22603 0.98356 1.00196 0.92669 0.89183 1.23937 0.86791 0.95708 0.97007 1.89224 1.38013 1.74480 1.28096 1.22539 0.89024 1.01653 0.83532 0.84839 1.24109 0.92041 0.73219 0.80374 1.90658 1.30108 1.49070 1.71404 1.86478 1.36564 1.74972 1.27232 1.22412 0.83925 1.02711 0.90261 1.19956 0.84931 0.83514 0.87408 1.90560 1.20450 1.59404 1.79024 1.41404 1.06137 1.56385 1.08781 1.20015 0.80072 1.55823 0.94929 0.87183 1.26045 1.03664 0.94745 0.94931 1.70094 1.34150 1.42306 1.02855 0.84990 0.77151 0.78001 0.79013 1.18480 1.20159 1.20307 1.17391 0.94211 0.92488 0.84238 1.21142 1.03194 0.94507 0.97851 1.21105 1.00106 1.00452 0.92086 1.21246 1.01678 0.92496 1.00054 1.21084 1.00633 0.97130 0.94980 1.20837 0.99177 0.97257 0.94001 1.23099 1.00225 0.95150 0.99168 0.91559 0.91763 0.90642 0.86970 0.89408 0.88386 0.88491 0.91597 0.88111 0.84036 0.83260 0.84480 0.89601 0.87114 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.95 71.98 0.64 -0.75 16 2 C -0.12 -1.77 3.72 -9.67 -0.04 -1.81 16 3 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.04 0.65 7.18 72.49 0.52 1.18 16 5 O -0.38 -10.14 10.91 -130.57 -1.42 -11.56 16 6 C 0.09 2.36 3.81 30.35 0.12 2.48 16 7 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 8 C 0.46 16.41 7.20 71.24 0.51 16.92 16 9 O -0.52 -21.84 16.30 28.22 0.46 -21.38 16 10 O -0.34 -13.44 9.75 -45.02 -0.44 -13.88 16 11 C 0.08 3.60 4.49 71.24 0.32 3.92 16 12 C 0.45 22.79 7.66 87.66 0.67 23.46 16 13 O -0.61 -33.41 16.48 15.78 0.26 -33.15 16 14 N -0.41 -21.18 2.66 -458.90 -1.22 -22.40 16 15 C -0.38 -19.32 9.19 84.02 0.77 -18.55 16 16 H 0.11 5.24 6.46 -2.91 -0.02 5.22 16 17 C 0.01 0.63 5.24 84.91 0.44 1.08 16 18 N -0.86 -43.77 10.34 21.65 0.22 -43.55 16 19 Si 0.99 39.36 29.59 68.60 2.03 41.39 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 23 C 0.21 10.39 2.29 38.22 0.09 10.48 16 24 C -0.15 -6.80 9.95 22.41 0.22 -6.57 16 25 C -0.12 -4.52 10.04 22.25 0.22 -4.29 16 26 C -0.14 -4.81 10.04 22.30 0.22 -4.58 16 27 C -0.12 -4.68 10.04 22.25 0.22 -4.46 16 28 C -0.09 -4.44 8.66 22.41 0.19 -4.25 16 29 C -0.14 -2.88 6.28 31.71 0.20 -2.68 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.03 7.87 -2.38 -0.02 1.01 16 35 H 0.10 4.05 7.52 -2.39 -0.02 4.03 16 36 H 0.10 4.12 8.13 -2.38 -0.02 4.10 16 37 H 0.27 13.26 8.32 -92.71 -0.77 12.49 16 38 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.09 4.28 8.06 -2.91 -0.02 4.25 16 43 H 0.11 1.98 7.74 -2.39 -0.02 1.96 16 44 H 0.07 1.59 7.87 -2.38 -0.02 1.57 16 Total: -1.00 -70.11 375.14 6.23 -63.87 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 1.00 Total: 29.09 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.34 Total: 11.57 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -1.00 Total: -65.94 kcal Atomic # 8 Polarization: -78.83 SS G_CDS: -1.14 Total: -79.97 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -70.11 6.23 -63.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885565905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.963 kcal (2) G-P(sol) polarization free energy of solvation -70.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds