Wall clock time and date at job start Tue Mar 31 2020 17:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.80495 * 2 1 4 4 C 1.54990 * 110.90622 * 123.62776 * 2 1 3 5 5 O 1.44379 * 103.49077 * 155.21949 * 4 2 1 6 6 C 1.43738 * 106.97795 * 319.93924 * 5 4 2 7 7 H 1.08997 * 109.88124 * 266.94024 * 6 5 4 8 8 C 1.50698 * 109.88063 * 145.93501 * 6 5 4 9 9 O 1.20828 * 119.99832 * 356.45643 * 8 6 5 10 10 O 1.34233 * 120.00423 * 176.45503 * 8 6 5 11 11 C 1.45196 * 117.00320 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.47103 * 179.97438 * 11 10 8 13 13 O 1.21277 * 120.00103 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99939 * 180.02562 * 12 11 10 15 15 C 1.37138 * 120.00143 * 4.78946 * 14 12 11 16 16 H 1.08001 * 119.99927 * 22.80948 * 15 14 12 17 17 C 1.38885 * 120.00320 * 202.81023 * 15 14 12 18 18 N 1.31424 * 119.99858 * 2.48516 * 17 15 14 19 19 Si 1.86795 * 120.00353 * 182.48257 * 17 15 14 20 20 H 1.48497 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46961 * 120.00272 * 19 17 15 22 22 H 1.48497 * 109.47334 * 239.99852 * 19 17 15 23 23 C 1.39791 * 119.99780 * 184.78910 * 14 12 11 24 24 C 1.38963 * 120.07588 * 252.97795 * 23 14 12 25 25 C 1.38083 * 119.92040 * 180.02562 * 24 23 14 26 26 C 1.38305 * 120.07938 * 359.97438 * 25 24 23 27 27 C 1.38303 * 120.15619 * 359.97438 * 26 25 24 28 28 C 1.38091 * 120.07815 * 0.02562 * 27 26 25 29 29 C 1.54103 * 107.29148 * 26.51297 * 6 5 4 30 30 H 1.08997 * 109.46839 * 297.83018 * 1 2 3 31 31 H 1.08999 * 109.46581 * 57.82625 * 1 2 3 32 32 H 1.08994 * 109.47191 * 177.82165 * 1 2 3 33 33 H 1.09007 * 110.62014 * 36.71843 * 4 2 1 34 34 H 1.08997 * 110.62164 * 273.71976 * 4 2 1 35 35 H 1.09006 * 109.46749 * 60.00034 * 11 10 8 36 36 H 1.08994 * 109.47378 * 300.00206 * 11 10 8 37 37 H 0.96995 * 120.00161 * 184.98143 * 18 17 15 38 38 H 1.08006 * 120.03992 * 0.02562 * 24 23 14 39 39 H 1.08004 * 119.96093 * 179.97438 * 25 24 23 40 40 H 1.08003 * 119.92110 * 179.73087 * 26 25 24 41 41 H 1.07996 * 119.96554 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.03661 * 180.02562 * 28 27 26 43 43 H 1.08999 * 110.48840 * 116.64673 * 29 6 5 44 44 H 1.09004 * 110.48725 * 239.29182 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8018 1.2056 5 8 3.3941 -1.2142 0.7629 6 6 3.2718 -1.5885 -0.6194 7 1 3.0852 -2.6595 -0.6983 8 6 4.5350 -1.2328 -1.3603 9 8 5.4279 -0.6534 -0.7885 10 8 4.6681 -1.5595 -2.6555 11 6 5.9114 -1.1850 -3.3054 12 6 5.8800 -1.6308 -4.7445 13 8 4.9056 -2.2070 -5.1798 14 7 6.9348 -1.3892 -5.5480 15 6 8.0744 -0.8265 -5.0329 16 1 8.2883 -0.9096 -3.9776 17 6 8.9536 -0.1497 -5.8684 18 7 8.6695 -0.0063 -7.1435 19 14 10.5397 0.5568 -5.1798 20 1 10.6234 0.2614 -3.7269 21 1 11.6985 -0.0569 -5.8768 22 1 10.5585 2.0269 -5.3884 23 6 6.8671 -1.7123 -6.9064 24 6 7.5755 -2.8014 -7.3993 25 6 7.5068 -3.1173 -8.7418 26 6 6.7336 -2.3515 -9.5954 27 6 6.0264 -1.2675 -9.1080 28 6 6.0905 -0.9457 -7.7667 29 6 2.0825 -0.8017 -1.2036 30 1 -0.3633 0.4798 0.9088 31 1 -0.3632 0.5472 -0.8699 32 1 -0.3633 -1.0269 -0.0391 33 1 1.4561 -1.6699 1.4094 34 1 2.1583 -0.1659 2.0876 35 1 6.7468 -1.6642 -2.7950 36 1 6.0321 -0.1026 -3.2625 37 1 9.3150 0.4020 -7.7413 38 1 8.1792 -3.4001 -6.7332 39 1 8.0574 -3.9634 -9.1257 40 1 6.6852 -2.5983 -10.6457 41 1 5.4240 -0.6714 -9.7774 42 1 5.5376 -0.0993 -7.3867 43 1 2.4210 -0.1260 -1.9891 44 1 1.3246 -1.4849 -1.5872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885565908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:18 Heat of formation + Delta-G solvation = -123.143375 kcal Electronic energy + Delta-G solvation = -28572.969894 eV Core-core repulsion = 24456.194990 eV Total energy + Delta-G solvation = -4116.774904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.70168 -39.56251 -38.97631 -37.28778 -35.96336 -34.80843 -33.84753 -31.77472 -30.95389 -29.89060 -29.52981 -27.42127 -26.61577 -25.05706 -24.08554 -21.80490 -21.52310 -20.95706 -20.58870 -19.42967 -17.99212 -17.82103 -16.74328 -16.61832 -16.07565 -15.80078 -15.56121 -15.28204 -14.89859 -14.73573 -14.47367 -14.20671 -14.17214 -13.54229 -13.48792 -13.19982 -12.91613 -12.54891 -12.45939 -12.35247 -12.14213 -11.84210 -11.65449 -11.58219 -11.45795 -11.25379 -11.12399 -11.02894 -11.00502 -10.59725 -10.39712 -10.38460 -10.34625 -10.22620 -9.83516 -9.49417 -8.74755 -8.24530 -7.86509 -7.62608 -6.27994 -4.22507 2.32780 2.39090 2.49578 2.53705 3.02950 3.15357 3.18379 3.56071 3.73049 3.95526 4.18457 4.38623 4.49318 4.52196 4.80510 4.88079 4.93424 5.03035 5.08643 5.17093 5.26523 5.40815 5.45876 5.50939 5.63374 5.74806 5.75851 5.77348 5.79516 5.85442 5.90945 5.91922 6.01659 6.40285 6.48540 6.54905 6.66745 6.78529 7.03237 7.20399 7.32122 7.44954 7.54584 7.72475 7.93523 7.96022 8.32348 8.86287 9.17652 9.59778 10.51627 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003110 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.685515 B = 9000.378169 C =10299.253548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 H 0.089 0.911 4 C 0.049 3.951 5 O -0.349 6.349 6 C 0.091 3.909 7 H 0.110 0.890 8 C 0.455 3.545 9 O -0.492 6.492 10 O -0.332 6.332 11 C 0.073 3.927 12 C 0.470 3.530 13 O -0.573 6.573 14 N -0.408 5.408 15 C -0.360 4.360 16 H 0.102 0.898 17 C 0.048 3.952 18 N -0.846 5.846 19 Si 0.924 3.076 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.246 3.754 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.149 4.149 27 C -0.118 4.118 28 C -0.079 4.079 29 C -0.140 4.140 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.274 0.726 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 -0.823 7.942 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 H 0.108 0.892 4 C -0.027 4.027 5 O -0.268 6.268 6 C 0.032 3.968 7 H 0.127 0.873 8 C 0.296 3.704 9 O -0.378 6.378 10 O -0.247 6.247 11 C -0.004 4.004 12 C 0.258 3.742 13 O -0.456 6.456 14 N -0.125 5.125 15 C -0.485 4.485 16 H 0.120 0.880 17 C -0.161 4.161 18 N -0.481 5.481 19 Si 0.750 3.250 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.204 1.204 23 C 0.155 3.845 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.167 4.167 27 C -0.137 4.137 28 C -0.099 4.099 29 C -0.177 4.177 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.724 -0.774 7.838 13.305 hybrid contribution 1.257 0.632 0.115 1.411 sum -9.467 -0.142 7.953 12.365 Atomic orbital electron populations 1.21719 0.93375 1.02402 1.02381 1.22793 0.96963 1.00593 0.94431 0.89248 1.23756 0.83620 0.97883 0.97452 1.88990 1.29662 1.86288 1.21840 1.22125 0.90659 1.01176 0.82850 0.87273 1.23410 0.88957 0.76750 0.81265 1.90680 1.41372 1.37457 1.68323 1.86462 1.41043 1.73518 1.23676 1.22656 0.83375 1.02108 0.92215 1.19570 0.83145 0.84475 0.86992 1.90619 1.33429 1.45328 1.76221 1.41158 1.12481 1.53633 1.05262 1.19711 0.99463 1.33533 0.95841 0.88003 1.25360 0.99924 0.95280 0.95513 1.69885 1.34650 1.40368 1.03159 0.85899 0.80916 0.78864 0.79342 1.19051 1.20389 1.20384 1.17078 0.92924 0.91198 0.83275 1.20903 1.00462 0.97251 0.95234 1.20655 1.00010 0.99737 0.93382 1.20716 1.00190 0.97466 0.98323 1.20657 1.00452 0.97727 0.94859 1.20753 0.98805 0.97511 0.92819 1.22995 0.96305 0.99639 0.98809 0.92142 0.91894 0.92103 0.91449 0.88382 0.89008 0.88413 0.91504 0.87470 0.87620 0.87789 0.87606 0.87871 0.89354 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.13 -1.12 3.72 -88.61 -0.33 -1.45 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.05 0.44 7.17 38.21 0.27 0.72 16 5 O -0.35 -4.76 10.74 -54.84 -0.59 -5.35 16 6 C 0.09 1.19 3.96 -27.31 -0.11 1.08 16 7 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 8 C 0.46 7.90 7.06 36.00 0.25 8.16 16 9 O -0.49 -9.91 16.28 -25.38 -0.41 -10.32 16 10 O -0.33 -6.38 9.75 -45.91 -0.45 -6.82 16 11 C 0.07 1.50 4.57 36.00 0.16 1.67 16 12 C 0.47 11.29 7.61 -10.99 -0.08 11.21 16 13 O -0.57 -15.03 16.41 -14.10 -0.23 -15.26 16 14 N -0.41 -10.13 2.67 -58.98 -0.16 -10.28 16 15 C -0.36 -8.81 9.03 -14.94 -0.13 -8.95 16 16 H 0.10 2.36 6.56 -52.49 -0.34 2.01 16 17 C 0.05 1.16 5.38 -17.49 -0.09 1.06 16 18 N -0.85 -21.41 10.22 55.49 0.57 -20.84 16 19 Si 0.92 19.16 29.56 -169.99 -5.02 14.14 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.25 6.05 2.33 -83.70 -0.20 5.85 16 24 C -0.12 -2.73 9.66 -39.37 -0.38 -3.11 16 25 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 26 C -0.15 -2.85 10.04 -39.53 -0.40 -3.25 16 27 C -0.12 -2.41 10.04 -39.61 -0.40 -2.81 16 28 C -0.08 -1.86 8.82 -39.37 -0.35 -2.21 16 29 C -0.14 -1.47 6.22 -25.20 -0.16 -1.63 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.81 7.49 -51.93 -0.39 1.42 16 36 H 0.10 1.96 8.13 -51.93 -0.42 1.54 16 37 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 38 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 39 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.10 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 44 H 0.09 0.82 7.83 -51.93 -0.41 0.42 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -31.36 374.93 -8.80 -40.16 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.16 Total: 5.92 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.99 Total: 3.01 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.41 Total: -31.12 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.68 Total: -37.76 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.36 -8.80 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885565908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.985 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds