Wall clock time and date at job start Tue Mar 31 2020 17:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 O 1.45209 * 109.46941 * 119.99886 * 2 1 3 5 5 C 1.34229 * 117.00242 * 89.99864 * 4 2 1 6 6 O 1.20833 * 119.99818 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99925 * 180.02562 * 5 4 2 8 8 C 1.53045 * 109.45936 * 179.97438 * 7 5 4 9 9 C 1.53189 * 109.31267 * 181.36924 * 8 7 5 10 10 N 1.46923 * 108.77751 * 305.36979 * 9 8 7 11 11 S 1.65606 * 120.62889 * 233.58517 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.46931 * 118.74107 * 53.86074 * 10 9 8 25 25 C 1.53037 * 109.45066 * 300.05921 * 7 5 4 26 26 H 1.09004 * 109.46779 * 60.00730 * 1 2 3 27 27 H 1.09007 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00443 * 1 2 3 29 29 H 1.08997 * 109.47459 * 239.99557 * 2 1 3 30 30 H 1.09005 * 109.46852 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46963 * 299.99331 * 3 2 1 32 32 H 1.08997 * 109.47303 * 59.99461 * 3 2 1 33 33 H 1.09003 * 109.46031 * 60.03039 * 7 5 4 34 34 H 1.09005 * 109.49426 * 61.42475 * 8 7 5 35 35 H 1.08992 * 109.49752 * 301.32744 * 8 7 5 36 36 H 1.08999 * 109.58666 * 185.58022 * 9 8 7 37 37 H 1.08997 * 109.70153 * 65.22728 * 9 8 7 38 38 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 39 39 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 40 40 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 41 41 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 42 42 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58474 * 65.92316 * 24 10 9 44 44 H 1.08997 * 109.58648 * 186.35716 * 24 10 9 45 45 H 1.09000 * 109.49856 * 298.57770 * 25 7 5 46 46 H 1.09010 * 109.49490 * 58.67469 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2171 -2.0075 1.0853 6 8 1.9982 -2.5749 0.0412 7 6 2.7181 -2.7853 2.2748 8 6 2.8621 -4.2609 1.8953 9 6 3.3388 -5.0538 3.1162 10 7 4.5714 -4.4392 3.6276 11 16 5.9381 -5.3477 3.8496 12 8 5.4520 -6.6661 4.0610 13 8 6.6552 -4.6596 4.8653 14 6 6.8160 -5.2393 2.2659 15 6 8.1125 -6.0477 2.3450 16 6 8.8415 -5.9581 1.0291 17 1 8.4222 -5.3818 0.2176 18 6 10.0443 -6.6110 0.8615 19 7 10.6806 -6.5323 -0.2868 20 14 10.7698 -7.6071 2.2653 21 1 10.2820 -9.0073 2.1825 22 1 12.2515 -7.5928 2.1682 23 1 10.3527 -7.0134 3.5609 24 6 4.5668 -3.0043 3.9441 25 6 4.0777 -2.2329 2.7089 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.0081 -2.6897 3.0964 34 1 3.5903 -4.3600 1.0902 35 1 1.8982 -4.6471 1.5642 36 1 3.5379 -6.0857 2.8268 37 1 2.5717 -5.0330 3.8903 38 1 7.0508 -4.1967 2.0513 39 1 6.1851 -5.6402 1.4726 40 1 7.8781 -7.0903 2.5599 41 1 8.7431 -5.6462 3.1383 42 1 11.5266 -6.9920 -0.4048 43 1 3.8970 -2.8175 4.7834 44 1 5.5763 -2.6835 4.2009 45 1 4.7945 -2.3507 1.8963 46 1 3.9786 -1.1760 2.9569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885691069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:25 Heat of formation + Delta-G solvation = -176.681843 kcal Electronic energy + Delta-G solvation = -27593.052788 eV Core-core repulsion = 23609.400233 eV Total energy + Delta-G solvation = -3983.652555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99842 -38.58804 -36.96765 -36.82353 -35.60581 -33.95475 -33.67522 -32.67576 -31.48125 -31.29335 -27.69510 -26.18890 -25.89674 -23.64511 -22.73875 -21.46445 -20.94257 -20.21160 -18.74315 -18.10748 -17.71337 -16.99235 -16.67797 -16.16071 -16.04458 -15.57838 -14.75334 -14.70867 -14.53287 -14.45103 -14.26316 -13.94008 -13.78613 -13.55000 -13.24405 -12.87410 -12.77282 -12.70155 -12.66755 -12.30327 -12.10723 -11.91084 -11.75408 -11.69659 -11.57130 -11.44932 -11.31719 -11.25589 -11.20468 -10.93574 -10.87646 -10.85885 -10.49707 -10.43391 -10.14806 -9.74367 -9.43267 -8.93949 -8.66456 -6.16565 -4.17876 0.60001 1.98290 2.36998 2.84819 3.26374 3.33743 3.37647 4.13334 4.23344 4.34177 4.35641 4.40066 4.41087 4.50092 4.52869 4.74283 4.76411 4.87227 4.95011 5.12148 5.12351 5.15031 5.28975 5.30877 5.35954 5.41621 5.45093 5.46035 5.50327 5.56326 5.60081 5.65283 5.69363 5.73175 5.84132 6.01911 6.03766 6.25930 6.28445 6.53227 6.81300 6.93520 7.53827 7.54645 8.36646 8.84814 9.43010 10.95866 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.003001 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.640938 B = 9327.153089 C =10352.860466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.353 6.353 5 C 0.465 3.535 6 O -0.504 6.504 7 C -0.075 4.075 8 C -0.123 4.123 9 C 0.124 3.876 10 N -1.007 6.007 11 S 2.588 3.412 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.583 4.583 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.125 3.875 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.028 0.972 41 H 0.032 0.968 42 H 0.266 0.734 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.251 14.087 4.833 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.270 6.270 5 C 0.308 3.692 6 O -0.391 6.391 7 C -0.094 4.094 8 C -0.162 4.162 9 C -0.001 4.001 10 N -0.844 5.844 11 S 2.686 3.314 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.716 4.716 15 C -0.046 4.046 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.001 4.001 25 C -0.169 4.169 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.972 13.437 5.239 25.453 hybrid contribution 0.359 -0.223 -0.362 0.556 sum -20.613 13.214 4.877 24.966 Atomic orbital electron populations 1.22206 0.94360 1.03024 1.03067 1.22746 0.94529 0.93184 0.87198 1.21891 1.02334 0.93362 1.03113 1.86568 1.76939 1.22379 1.41103 1.23836 0.73978 0.81200 0.90203 1.90672 1.47705 1.70027 1.30711 1.21052 0.99258 0.94712 0.94423 1.21915 1.03550 0.91901 0.98869 1.21387 0.86461 0.97211 0.95085 1.57997 1.26098 1.19151 1.81122 1.05779 0.73589 0.73636 0.78364 1.93542 1.78771 1.37340 1.85656 1.93543 1.72583 1.74310 1.54881 1.30352 1.11413 1.10356 1.19465 1.19407 0.90146 0.94457 1.00584 1.20851 1.05241 1.32823 0.96911 0.90435 1.24990 0.96568 0.95899 0.95664 1.69884 1.16365 1.43250 1.23850 0.86923 0.78785 0.81285 0.83448 1.19664 1.20758 1.18612 1.21462 1.03523 0.78968 0.96127 1.22071 0.94780 1.00554 0.99522 0.90709 0.92015 0.91536 0.89679 0.91488 0.90408 0.91374 0.87166 0.89960 0.89724 0.88301 0.90906 0.85721 0.85677 0.95424 0.94981 0.92380 0.90729 0.88297 0.90338 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.55 37.16 0.35 -0.81 16 2 C 0.08 0.65 3.18 -26.73 -0.09 0.56 16 3 C -0.15 -0.91 9.57 37.16 0.36 -0.56 16 4 O -0.35 -3.42 9.76 -39.25 -0.38 -3.80 16 5 C 0.47 4.99 7.23 36.00 0.26 5.25 16 6 O -0.50 -6.83 15.20 -18.76 -0.29 -7.12 16 7 C -0.08 -0.66 2.59 -91.73 -0.24 -0.90 16 8 C -0.12 -1.19 4.65 -26.61 -0.12 -1.31 16 9 C 0.12 1.27 6.31 -3.71 -0.02 1.24 16 10 N -1.01 -12.19 3.22 -113.28 -0.36 -12.55 16 11 S 2.59 42.86 5.41 -107.50 -0.58 42.28 16 12 O -0.96 -18.29 16.72 -57.54 -0.96 -19.25 16 13 O -0.96 -18.18 16.72 -57.54 -0.96 -19.15 16 14 C -0.58 -10.55 6.12 37.16 0.23 -10.33 16 15 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 16 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 20 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 24 C 0.12 1.22 6.34 -3.48 -0.02 1.19 16 25 C -0.13 -1.12 5.31 -26.39 -0.14 -1.26 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.82 7.16 -51.93 -0.37 0.45 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.10 1.07 7.10 -51.93 -0.37 0.70 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 39 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 40 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 41 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.01 7.09 -51.93 -0.37 0.64 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.63 8.08 -51.92 -0.42 0.21 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -35.72 383.64 -9.42 -45.14 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.80 Total: -1.71 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 0.02 Total: -20.07 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.41 Total: -38.93 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.59 Total: -49.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.86 SS G_CDS: -0.58 Total: 42.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.72 -9.42 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885691069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.539 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds