Wall clock time and date at job start Tue Mar 31 2020 17:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 O 1.45209 * 109.46941 * 119.99886 * 2 1 3 5 5 C 1.34229 * 117.00242 * 89.99864 * 4 2 1 6 6 O 1.20833 * 119.99818 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99925 * 180.02562 * 5 4 2 8 8 C 1.53045 * 109.45936 * 179.97438 * 7 5 4 9 9 C 1.53189 * 109.31267 * 181.36924 * 8 7 5 10 10 N 1.46923 * 108.77751 * 305.36979 * 9 8 7 11 11 S 1.65606 * 120.62889 * 233.58517 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.46931 * 118.74107 * 53.86074 * 10 9 8 25 25 C 1.53037 * 109.45066 * 300.05921 * 7 5 4 26 26 H 1.09004 * 109.46779 * 60.00730 * 1 2 3 27 27 H 1.09007 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00443 * 1 2 3 29 29 H 1.08997 * 109.47459 * 239.99557 * 2 1 3 30 30 H 1.09005 * 109.46852 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46963 * 299.99331 * 3 2 1 32 32 H 1.08997 * 109.47303 * 59.99461 * 3 2 1 33 33 H 1.09003 * 109.46031 * 60.03039 * 7 5 4 34 34 H 1.09005 * 109.49426 * 61.42475 * 8 7 5 35 35 H 1.08992 * 109.49752 * 301.32744 * 8 7 5 36 36 H 1.08999 * 109.58666 * 185.58022 * 9 8 7 37 37 H 1.08997 * 109.70153 * 65.22728 * 9 8 7 38 38 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 39 39 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 40 40 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 41 41 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 42 42 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58474 * 65.92316 * 24 10 9 44 44 H 1.08997 * 109.58648 * 186.35716 * 24 10 9 45 45 H 1.09000 * 109.49856 * 298.57770 * 25 7 5 46 46 H 1.09010 * 109.49490 * 58.67469 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2171 -2.0075 1.0853 6 8 1.9982 -2.5749 0.0412 7 6 2.7181 -2.7853 2.2748 8 6 2.8621 -4.2609 1.8953 9 6 3.3388 -5.0538 3.1162 10 7 4.5714 -4.4392 3.6276 11 16 5.9381 -5.3477 3.8496 12 8 5.4520 -6.6661 4.0610 13 8 6.6552 -4.6596 4.8653 14 6 6.8160 -5.2393 2.2659 15 6 8.1125 -6.0477 2.3450 16 6 8.8415 -5.9581 1.0291 17 1 8.4222 -5.3818 0.2176 18 6 10.0443 -6.6110 0.8615 19 7 10.6806 -6.5323 -0.2868 20 14 10.7698 -7.6071 2.2653 21 1 10.2820 -9.0073 2.1825 22 1 12.2515 -7.5928 2.1682 23 1 10.3527 -7.0134 3.5609 24 6 4.5668 -3.0043 3.9441 25 6 4.0777 -2.2329 2.7089 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.0081 -2.6897 3.0964 34 1 3.5903 -4.3600 1.0902 35 1 1.8982 -4.6471 1.5642 36 1 3.5379 -6.0857 2.8268 37 1 2.5717 -5.0330 3.8903 38 1 7.0508 -4.1967 2.0513 39 1 6.1851 -5.6402 1.4726 40 1 7.8781 -7.0903 2.5599 41 1 8.7431 -5.6462 3.1383 42 1 11.5266 -6.9920 -0.4048 43 1 3.8970 -2.8175 4.7834 44 1 5.5763 -2.6835 4.2009 45 1 4.7945 -2.3507 1.8963 46 1 3.9786 -1.1760 2.9569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885691069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:24 Heat of formation + Delta-G solvation = -200.882508 kcal Electronic energy + Delta-G solvation = -27594.102207 eV Core-core repulsion = 23609.400233 eV Total energy + Delta-G solvation = -3984.701975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80160 -39.39121 -38.24106 -37.79826 -37.03147 -35.90258 -34.38758 -33.51070 -33.43578 -32.07355 -28.20409 -27.91291 -26.93177 -24.43095 -23.61976 -23.03382 -21.80857 -21.09608 -19.91572 -19.40895 -18.87757 -18.48261 -17.49484 -17.27641 -17.11560 -16.86355 -16.40790 -15.81763 -15.44427 -15.25525 -15.23817 -15.10710 -14.85414 -14.70614 -14.45130 -13.95505 -13.80977 -13.64462 -13.57965 -13.21482 -13.16599 -13.13898 -13.07718 -12.96739 -12.90236 -12.72012 -12.56155 -12.24917 -12.22011 -11.96492 -11.94198 -11.74418 -11.71157 -11.63133 -11.57474 -11.38510 -11.15419 -10.85766 -9.97501 -8.37821 -6.44011 -0.73493 1.16563 1.31717 1.32934 1.43634 1.64408 1.70716 2.28741 2.80281 2.96067 3.15091 3.45255 3.63953 3.72550 3.81513 3.83975 3.95000 4.00037 4.04437 4.13996 4.14617 4.26045 4.39129 4.55283 4.57732 4.67513 4.73691 4.75469 4.76477 4.79744 4.84141 4.89373 4.94729 5.06434 5.09096 5.12399 5.13514 5.20845 5.22108 5.29460 5.46504 5.53336 5.64719 6.15462 6.62088 6.73763 7.20472 8.78027 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.003001 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.640938 B = 9327.153089 C =10352.860466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.352 6.352 5 C 0.466 3.534 6 O -0.540 6.540 7 C -0.072 4.072 8 C -0.121 4.121 9 C 0.120 3.880 10 N -0.998 5.998 11 S 2.620 3.380 12 O -0.985 6.985 13 O -0.983 6.983 14 C -0.594 4.594 15 C -0.015 4.015 16 C -0.529 4.529 17 H 0.045 0.955 18 C 0.012 3.988 19 N -0.941 5.941 20 Si 0.928 3.072 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.247 1.247 24 C 0.118 3.882 25 C -0.126 4.126 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.270 0.730 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.029 15.112 7.150 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.268 6.268 5 C 0.310 3.690 6 O -0.430 6.430 7 C -0.091 4.091 8 C -0.160 4.160 9 C -0.004 4.004 10 N -0.837 5.837 11 S 2.716 3.284 12 O -0.975 6.975 13 O -0.973 6.973 14 C -0.725 4.725 15 C -0.054 4.054 16 C -0.568 4.568 17 H 0.063 0.937 18 C -0.187 4.187 19 N -0.581 5.581 20 Si 0.750 3.250 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.171 1.171 24 C -0.007 4.007 25 C -0.165 4.165 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.740 14.477 7.549 27.995 hybrid contribution 0.790 -0.421 -1.173 1.475 sum -21.950 14.057 6.376 26.834 Atomic orbital electron populations 1.22188 0.93165 1.02379 1.04466 1.22976 0.95603 0.94006 0.86021 1.21900 1.01931 0.91929 1.04450 1.86562 1.76712 1.21889 1.41678 1.24237 0.73105 0.81458 0.90188 1.90663 1.49433 1.70711 1.32189 1.21123 0.99980 0.93512 0.94446 1.21866 1.03316 0.92831 0.98007 1.21617 0.86027 0.96704 0.96101 1.57693 1.24922 1.20181 1.80913 1.04610 0.73779 0.73192 0.76840 1.93509 1.79229 1.39218 1.85573 1.93512 1.73918 1.74729 1.55145 1.30407 1.09632 1.10131 1.22280 1.19354 0.92388 0.95671 0.98020 1.21185 1.05635 1.31843 0.98121 0.93696 1.25919 0.97187 0.97252 0.98300 1.70019 1.17144 1.44820 1.26126 0.85984 0.78351 0.80058 0.80605 1.18504 1.19839 1.17058 1.21770 1.04271 0.77099 0.97524 1.22053 0.94188 1.01707 0.98563 0.89073 0.93627 0.90389 0.91693 0.92117 0.88699 0.90398 0.83983 0.92163 0.88866 0.89097 0.87771 0.84690 0.84971 0.95126 0.94822 0.92102 0.87607 0.88732 0.91959 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.55 71.98 0.69 -1.35 16 2 C 0.07 1.07 3.18 30.59 0.10 1.17 16 3 C -0.15 -1.52 9.57 71.98 0.69 -0.83 16 4 O -0.35 -6.29 9.76 -51.41 -0.50 -6.79 16 5 C 0.47 9.49 7.23 71.23 0.51 10.00 16 6 O -0.54 -14.74 15.20 21.94 0.33 -14.41 16 7 C -0.07 -1.08 2.59 -11.51 -0.03 -1.11 16 8 C -0.12 -2.15 4.65 30.67 0.14 -2.01 16 9 C 0.12 2.16 6.31 86.36 0.55 2.71 16 10 N -1.00 -21.89 3.22 -512.30 -1.65 -23.54 16 11 S 2.62 83.28 5.41 -56.49 -0.31 82.97 16 12 O -0.99 -36.07 16.72 -127.65 -2.13 -38.21 16 13 O -0.98 -35.50 16.72 -127.65 -2.13 -37.63 16 14 C -0.59 -21.55 6.12 71.98 0.44 -21.11 16 15 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 16 C -0.53 -30.40 9.66 25.60 0.25 -30.15 16 17 H 0.04 2.78 7.99 -2.91 -0.02 2.76 16 18 C 0.01 0.69 5.47 84.66 0.46 1.16 16 19 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 20 Si 0.93 44.13 27.47 68.60 1.88 46.02 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 24 C 0.12 1.94 6.34 86.51 0.55 2.49 16 25 C -0.13 -1.87 5.31 30.82 0.16 -1.71 16 26 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.27 7.16 -2.39 -0.02 1.26 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 35 H 0.09 1.51 8.07 -2.39 -0.02 1.50 16 36 H 0.09 1.83 7.10 -2.39 -0.02 1.81 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.13 4.49 8.14 -2.39 -0.02 4.47 16 39 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 41 H 0.03 1.57 7.20 -2.39 -0.02 1.55 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.70 7.09 -2.39 -0.02 1.68 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.11 1.21 8.08 -2.38 -0.02 1.19 16 Total: -1.00 -78.66 383.64 1.32 -77.34 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.89 Total: 13.95 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 4.63 Total: -41.36 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.35 Total: -81.88 kcal Atomic # 8 Polarization: -92.61 SS G_CDS: -4.44 Total: -97.04 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 16 Polarization: 83.28 SS G_CDS: -0.31 Total: 82.97 kcal Total: -78.66 1.32 -77.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885691069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.539 kcal (2) G-P(sol) polarization free energy of solvation -78.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds