Wall clock time and date at job start Tue Mar 31 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34706 * 117.00481 * 2 1 4 4 O 1.21473 * 119.99873 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00326 * 179.97438 * 3 2 1 6 6 C 1.39655 * 119.96490 * 359.97438 * 5 3 2 7 7 C 1.38153 * 119.75432 * 180.90633 * 6 5 3 8 8 C 1.37768 * 119.87133 * 359.79021 * 7 6 5 9 9 C 1.38883 * 121.12263 * 358.51626 * 8 7 6 10 10 C 1.38672 * 119.34428 * 2.48022 * 9 8 7 11 11 O 1.35591 * 120.54547 * 184.02098 * 9 8 7 12 12 C 1.43278 * 115.67966 * 71.13091 * 11 9 8 13 13 C 1.52192 * 109.97348 * 270.74911 * 12 11 9 14 14 N 1.46365 * 111.16905 * 60.99724 * 13 12 11 15 15 C 1.34778 * 119.71839 * 115.97390 * 14 13 12 16 16 O 1.21278 * 119.99611 * 174.45161 * 15 14 13 17 17 C 1.50698 * 120.00075 * 354.45793 * 15 14 13 18 18 H 1.08999 * 109.47057 * 334.57955 * 17 15 14 19 19 C 1.52988 * 109.47347 * 94.59009 * 17 15 14 20 20 C 1.50709 * 109.46631 * 214.58902 * 17 15 14 21 21 H 1.08000 * 120.00137 * 359.97438 * 20 17 15 22 22 C 1.37879 * 119.99600 * 179.97438 * 20 17 15 23 23 N 1.31521 * 119.99617 * 179.97438 * 22 20 17 24 24 Si 1.86799 * 120.00121 * 0.02562 * 22 20 17 25 25 H 1.48492 * 109.47234 * 89.99964 * 24 22 20 26 26 H 1.48504 * 109.46764 * 209.99807 * 24 22 20 27 27 H 1.48495 * 109.47078 * 329.99632 * 24 22 20 28 28 C 1.46596 * 120.55570 * 295.99963 * 14 13 12 29 29 H 1.09005 * 109.46473 * 59.99932 * 1 2 3 30 30 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47415 * 300.00623 * 1 2 3 32 32 H 1.07994 * 120.12268 * 0.90833 * 6 5 3 33 33 H 1.07997 * 120.06034 * 179.77147 * 7 6 5 34 34 H 1.08004 * 120.10333 * 178.24650 * 10 9 8 35 35 H 1.09002 * 109.37324 * 150.62465 * 12 11 9 36 36 H 1.09003 * 109.37102 * 30.87434 * 12 11 9 37 37 H 1.09000 * 109.13671 * 181.42867 * 13 12 11 38 38 H 1.08999 * 109.14064 * 300.56263 * 13 12 11 39 39 H 1.08994 * 109.47600 * 65.06439 * 19 17 15 40 40 H 1.09001 * 109.47601 * 185.06684 * 19 17 15 41 41 H 1.09002 * 109.47183 * 305.06400 * 19 17 15 42 42 H 0.96996 * 119.99701 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.58073 * 200.54466 * 28 14 13 44 44 H 1.09001 * 109.58881 * 320.82852 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.2989 0.1057 0.0017 7 6 5.6781 0.1830 0.0212 8 6 6.2962 1.4141 0.0350 9 6 5.5567 2.5891 -0.0010 10 6 4.1717 2.5207 0.0006 11 8 6.1778 3.7925 -0.0687 12 6 6.8060 4.0974 -1.3198 13 6 8.2414 3.5915 -1.3178 14 7 8.2897 2.1392 -1.1419 15 6 8.7801 1.3627 -2.1283 16 8 8.9163 0.1708 -1.9507 17 6 9.1593 1.9756 -3.4518 18 1 8.5862 2.8898 -3.6063 19 6 10.6536 2.3039 -3.4524 20 6 8.8587 1.0008 -4.5612 21 1 8.4358 0.0341 -4.3308 22 6 9.1236 1.3432 -5.8703 23 7 8.8617 0.4924 -6.8384 24 14 9.8557 3.0150 -6.2686 25 1 11.3377 2.9227 -6.2536 26 1 9.4002 3.4467 -7.6145 27 1 9.4110 4.0044 -5.2546 28 6 7.8086 1.5222 0.0978 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.8101 -0.8572 -0.0127 33 1 6.2705 -0.7200 0.0258 34 1 3.5845 3.4272 0.0014 35 1 6.8033 5.1767 -1.4722 36 1 6.2545 3.6169 -2.1279 37 1 8.7137 3.8527 -2.2648 38 1 8.7873 4.0684 -0.5037 39 1 11.2286 1.3802 -3.3882 40 1 10.9101 2.8283 -4.3729 41 1 10.8867 2.9372 -2.5964 42 1 9.0484 0.7331 -7.7593 43 1 8.2419 0.5276 0.2029 44 1 8.0979 2.1386 0.9490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890502554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:26 Heat of formation + Delta-G solvation = -110.647173 kcal Electronic energy + Delta-G solvation = -29185.024109 eV Core-core repulsion = 25068.791081 eV Total energy + Delta-G solvation = -4116.233028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01716 -40.34841 -38.91599 -37.53956 -36.59090 -35.15664 -34.07177 -32.48578 -31.19015 -30.82155 -29.04172 -28.07293 -26.70693 -25.26733 -23.77207 -23.55359 -22.24212 -21.83640 -20.80838 -18.86436 -18.47848 -17.45880 -17.11850 -16.55503 -16.51672 -16.30128 -15.98509 -15.91965 -15.30339 -15.14064 -14.59923 -14.33589 -14.10901 -13.83029 -13.62151 -13.55231 -13.31515 -12.94092 -12.83173 -12.42744 -12.32441 -12.22531 -12.11764 -11.77626 -11.66237 -11.49584 -11.15734 -11.05707 -11.03935 -10.81767 -10.68634 -10.34500 -10.25137 -9.72983 -9.26705 -9.17907 -8.84526 -8.67643 -8.62099 -8.42791 -6.14414 -4.15281 0.46468 1.08035 2.27145 2.42907 3.17457 3.19983 3.21762 3.30204 3.37043 3.47542 3.91330 4.29346 4.44486 4.61394 4.75254 4.85071 4.91917 4.93871 4.97306 5.01736 5.08102 5.15898 5.17282 5.26506 5.34250 5.36504 5.57467 5.65503 5.74215 5.77304 5.83249 5.97341 6.06319 6.07860 6.18225 6.23159 6.35604 6.38854 6.44254 6.56870 6.79700 7.07251 7.31802 7.45140 7.52383 7.81945 8.42288 8.89096 8.97638 9.43305 10.98505 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003434 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.778272 B = 8152.625082 C = 8743.906342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.507 6.507 5 C -0.118 4.118 6 C -0.067 4.067 7 C -0.096 4.096 8 C -0.089 4.089 9 C 0.096 3.904 10 C -0.072 4.072 11 O -0.322 6.322 12 C 0.044 3.956 13 C 0.076 3.924 14 N -0.625 5.625 15 C 0.535 3.465 16 O -0.528 6.528 17 C -0.003 4.003 18 H 0.045 0.955 19 C -0.144 4.144 20 C -0.505 4.505 21 H 0.085 0.915 22 C 0.073 3.927 23 N -0.892 5.892 24 Si 0.885 3.115 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.150 3.850 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.102 0.898 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 4.887 15.810 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.119 4.119 6 C -0.085 4.085 7 C -0.115 4.115 8 C -0.092 4.092 9 C 0.051 3.949 10 C -0.091 4.091 11 O -0.239 6.239 12 C -0.032 4.032 13 C -0.048 4.048 14 N -0.360 5.360 15 C 0.326 3.674 16 O -0.401 6.401 17 C -0.024 4.024 18 H 0.063 0.937 19 C -0.201 4.201 20 C -0.543 4.543 21 H 0.104 0.896 22 C -0.130 4.130 23 N -0.530 5.530 24 Si 0.715 3.285 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.193 1.193 28 C 0.027 3.973 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.645 4.614 15.817 19.092 hybrid contribution 0.114 0.914 -0.578 1.088 sum -9.531 5.528 15.239 18.805 Atomic orbital electron populations 1.23296 0.75862 1.03853 1.02664 1.86548 1.23632 1.32511 1.84277 1.21168 0.89043 0.81447 0.72513 1.90830 1.66805 1.36032 1.45935 1.18823 0.88904 0.94432 1.09778 1.21527 0.93740 0.97927 0.95303 1.20932 0.94136 0.97386 0.99026 1.21265 0.97708 0.93014 0.97165 1.18301 0.89883 0.85295 1.01384 1.21285 0.93419 0.97359 0.96992 1.86139 1.70544 1.31959 1.35230 1.23318 0.93444 1.01652 0.84757 1.22077 0.96991 0.81137 1.04594 1.48109 1.64622 1.06590 1.16681 1.21432 0.74384 0.86674 0.84947 1.90569 1.52818 1.15666 1.81087 1.19377 0.94024 0.98153 0.90879 0.93728 1.22089 0.97708 1.01069 0.99272 1.20785 1.42816 1.02196 0.88542 0.89649 1.24957 0.95118 0.96782 0.96102 1.69876 1.47839 1.35290 0.99994 0.86897 0.79466 0.84934 0.77178 1.20348 1.22170 1.19300 1.20536 0.87948 1.01221 0.87631 0.91720 0.87861 0.91824 0.83982 0.84054 0.83941 0.87161 0.91200 0.87267 0.90554 0.91777 0.93280 0.94759 0.92416 0.88015 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.98 9.80 -40.51 -0.40 -4.38 16 3 C 0.51 6.82 7.90 34.61 0.27 7.09 16 4 O -0.51 -7.72 16.12 -19.25 -0.31 -8.03 16 5 C -0.12 -1.56 5.87 -105.02 -0.62 -2.18 16 6 C -0.07 -0.82 9.62 -39.08 -0.38 -1.19 16 7 C -0.10 -1.27 9.69 -39.78 -0.39 -1.65 16 8 C -0.09 -1.27 5.52 -104.03 -0.57 -1.84 16 9 C 0.10 1.34 5.58 -39.18 -0.22 1.12 16 10 C -0.07 -0.98 9.54 -38.95 -0.37 -1.35 16 11 O -0.32 -4.30 9.90 -18.47 -0.18 -4.48 16 12 C 0.04 0.53 6.69 36.75 0.25 0.78 16 13 C 0.08 0.99 5.99 -4.53 -0.03 0.97 16 14 N -0.62 -10.24 2.68 -174.96 -0.47 -10.71 16 15 C 0.53 11.28 6.65 -10.99 -0.07 11.20 16 16 O -0.53 -12.84 15.51 5.56 0.09 -12.75 16 17 C 0.00 -0.06 1.41 -92.93 -0.13 -0.19 16 18 H 0.05 0.94 5.16 -51.93 -0.27 0.67 16 19 C -0.14 -2.93 8.46 37.15 0.31 -2.61 16 20 C -0.51 -14.13 8.90 -34.44 -0.31 -14.44 16 21 H 0.09 2.73 7.49 -52.49 -0.39 2.34 16 22 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 23 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 24 Si 0.89 20.61 24.32 -169.99 -4.13 16.48 16 25 H -0.28 -6.29 6.91 56.52 0.39 -5.90 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.27 -5.64 6.53 56.52 0.37 -5.27 16 28 C 0.15 2.13 5.69 -4.62 -0.03 2.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.14 1.44 7.60 -52.49 -0.40 1.05 16 33 H 0.14 1.72 8.00 -52.49 -0.42 1.30 16 34 H 0.14 1.87 7.64 -52.48 -0.40 1.47 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 37 H 0.11 1.48 5.24 -51.93 -0.27 1.20 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.05 1.02 3.42 -51.93 -0.18 0.84 16 41 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.10 1.51 6.91 -51.93 -0.36 1.15 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -34.36 359.08 -6.18 -40.54 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.66 Total: 2.95 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.30 Total: 1.12 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.30 Total: -36.85 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.80 Total: -29.65 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.13 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.36 -6.18 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890502554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.109 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds