Wall clock time and date at job start Tue Mar 31 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34706 * 117.00481 * 2 1 4 4 O 1.21473 * 119.99873 * 359.97438 * 3 2 1 5 5 C 1.47739 * 120.00326 * 179.97438 * 3 2 1 6 6 C 1.39655 * 119.96490 * 359.97438 * 5 3 2 7 7 C 1.38153 * 119.75432 * 180.90633 * 6 5 3 8 8 C 1.37768 * 119.87133 * 359.79021 * 7 6 5 9 9 C 1.38883 * 121.12263 * 358.51626 * 8 7 6 10 10 C 1.38672 * 119.34428 * 2.48022 * 9 8 7 11 11 O 1.35591 * 120.54547 * 184.02098 * 9 8 7 12 12 C 1.43278 * 115.67966 * 71.13091 * 11 9 8 13 13 C 1.52192 * 109.97348 * 270.74911 * 12 11 9 14 14 N 1.46365 * 111.16905 * 60.99724 * 13 12 11 15 15 C 1.34778 * 119.71839 * 115.97390 * 14 13 12 16 16 O 1.21278 * 119.99611 * 174.45161 * 15 14 13 17 17 C 1.50698 * 120.00075 * 354.45793 * 15 14 13 18 18 H 1.08999 * 109.47057 * 334.57955 * 17 15 14 19 19 C 1.52988 * 109.47347 * 94.59009 * 17 15 14 20 20 C 1.50709 * 109.46631 * 214.58902 * 17 15 14 21 21 H 1.08000 * 120.00137 * 359.97438 * 20 17 15 22 22 C 1.37879 * 119.99600 * 179.97438 * 20 17 15 23 23 N 1.31521 * 119.99617 * 179.97438 * 22 20 17 24 24 Si 1.86799 * 120.00121 * 0.02562 * 22 20 17 25 25 H 1.48492 * 109.47234 * 89.99964 * 24 22 20 26 26 H 1.48504 * 109.46764 * 209.99807 * 24 22 20 27 27 H 1.48495 * 109.47078 * 329.99632 * 24 22 20 28 28 C 1.46596 * 120.55570 * 295.99963 * 14 13 12 29 29 H 1.09005 * 109.46473 * 59.99932 * 1 2 3 30 30 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47415 * 300.00623 * 1 2 3 32 32 H 1.07994 * 120.12268 * 0.90833 * 6 5 3 33 33 H 1.07997 * 120.06034 * 179.77147 * 7 6 5 34 34 H 1.08004 * 120.10333 * 178.24650 * 10 9 8 35 35 H 1.09002 * 109.37324 * 150.62465 * 12 11 9 36 36 H 1.09003 * 109.37102 * 30.87434 * 12 11 9 37 37 H 1.09000 * 109.13671 * 181.42867 * 13 12 11 38 38 H 1.08999 * 109.14064 * 300.56263 * 13 12 11 39 39 H 1.08994 * 109.47600 * 65.06439 * 19 17 15 40 40 H 1.09001 * 109.47601 * 185.06684 * 19 17 15 41 41 H 1.09002 * 109.47183 * 305.06400 * 19 17 15 42 42 H 0.96996 * 119.99701 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.58073 * 200.54466 * 28 14 13 44 44 H 1.09001 * 109.58881 * 320.82852 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.2989 0.1057 0.0017 7 6 5.6781 0.1830 0.0212 8 6 6.2962 1.4141 0.0350 9 6 5.5567 2.5891 -0.0010 10 6 4.1717 2.5207 0.0006 11 8 6.1778 3.7925 -0.0687 12 6 6.8060 4.0974 -1.3198 13 6 8.2414 3.5915 -1.3178 14 7 8.2897 2.1392 -1.1419 15 6 8.7801 1.3627 -2.1283 16 8 8.9163 0.1708 -1.9507 17 6 9.1593 1.9756 -3.4518 18 1 8.5862 2.8898 -3.6063 19 6 10.6536 2.3039 -3.4524 20 6 8.8587 1.0008 -4.5612 21 1 8.4358 0.0341 -4.3308 22 6 9.1236 1.3432 -5.8703 23 7 8.8617 0.4924 -6.8384 24 14 9.8557 3.0150 -6.2686 25 1 11.3377 2.9227 -6.2536 26 1 9.4002 3.4467 -7.6145 27 1 9.4110 4.0044 -5.2546 28 6 7.8086 1.5222 0.0978 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.8101 -0.8572 -0.0127 33 1 6.2705 -0.7200 0.0258 34 1 3.5845 3.4272 0.0014 35 1 6.8033 5.1767 -1.4722 36 1 6.2545 3.6169 -2.1279 37 1 8.7137 3.8527 -2.2648 38 1 8.7873 4.0684 -0.5037 39 1 11.2286 1.3802 -3.3882 40 1 10.9101 2.8283 -4.3729 41 1 10.8867 2.9372 -2.5964 42 1 9.0484 0.7331 -7.7593 43 1 8.2419 0.5276 0.2029 44 1 8.0979 2.1386 0.9490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890502554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:25 Heat of formation + Delta-G solvation = -133.742000 kcal Electronic energy + Delta-G solvation = -29186.025576 eV Core-core repulsion = 25068.791081 eV Total energy + Delta-G solvation = -4117.234495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09973 -41.43895 -40.32495 -38.56369 -37.58103 -36.52362 -35.91433 -33.83255 -32.95214 -31.87870 -30.05370 -29.04133 -27.74571 -27.20500 -25.12031 -24.65558 -23.38669 -23.14253 -21.83581 -20.25039 -19.56718 -19.00688 -18.41900 -17.96407 -17.47897 -17.45149 -17.28089 -17.14656 -16.62509 -16.28432 -16.10772 -15.64709 -15.17658 -15.01842 -14.91727 -14.68983 -14.50803 -14.43394 -14.09642 -13.94591 -13.53321 -13.42114 -13.15626 -13.07429 -12.88495 -12.78736 -12.59486 -12.51278 -12.15667 -12.13714 -11.88204 -11.87046 -11.48537 -11.32106 -11.24041 -10.77501 -10.53400 -10.13359 -9.78988 -9.72366 -8.29299 -6.37469 -0.59180 0.04452 1.21769 1.34006 1.39187 1.51021 1.53216 1.75948 2.03876 2.33432 2.36297 2.86699 3.04858 3.44905 3.55747 3.71744 3.76997 3.95438 3.97815 4.06193 4.16971 4.20387 4.27006 4.31124 4.34658 4.42261 4.45759 4.59313 4.62192 4.65865 4.69029 4.71195 4.78480 4.84223 4.93482 4.99895 5.04360 5.20743 5.28735 5.41025 5.43081 5.47924 5.56407 6.16664 6.29286 6.43281 6.53566 6.72348 7.21982 7.35913 8.88304 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003434 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.778272 B = 8152.625082 C = 8743.906342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.516 3.484 4 O -0.531 6.531 5 C -0.125 4.125 6 C -0.061 4.061 7 C -0.106 4.106 8 C -0.103 4.103 9 C 0.091 3.909 10 C -0.077 4.077 11 O -0.322 6.322 12 C 0.043 3.957 13 C 0.066 3.934 14 N -0.615 5.615 15 C 0.532 3.468 16 O -0.576 6.576 17 C -0.005 4.005 18 H 0.070 0.930 19 C -0.140 4.140 20 C -0.518 4.518 21 H 0.021 0.979 22 C 0.009 3.991 23 N -0.951 5.951 24 Si 0.955 3.045 25 H -0.264 1.264 26 H -0.299 1.299 27 H -0.221 1.221 28 C 0.149 3.851 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.268 0.732 43 H 0.089 0.911 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 8.024 17.280 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.422 6.422 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.124 4.124 8 C -0.105 4.105 9 C 0.047 3.953 10 C -0.096 4.096 11 O -0.238 6.238 12 C -0.032 4.032 13 C -0.056 4.056 14 N -0.349 5.349 15 C 0.322 3.678 16 O -0.454 6.454 17 C -0.026 4.026 18 H 0.088 0.912 19 C -0.197 4.197 20 C -0.556 4.556 21 H 0.039 0.961 22 C -0.188 4.188 23 N -0.590 5.590 24 Si 0.779 3.221 25 H -0.190 1.190 26 H -0.227 1.227 27 H -0.143 1.143 28 C 0.027 3.973 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.086 0.914 32 H 0.180 0.820 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.387 7.783 17.350 21.206 hybrid contribution -0.107 -0.198 -0.979 1.005 sum -9.494 7.586 16.370 20.388 Atomic orbital electron populations 1.23641 0.73894 1.06091 1.02813 1.86538 1.25557 1.31319 1.83660 1.21173 0.89012 0.81690 0.71940 1.90813 1.67273 1.36879 1.47275 1.18966 0.89247 0.94688 1.09774 1.21713 0.93350 0.98602 0.94202 1.21105 0.94721 0.97504 0.99087 1.21329 0.97657 0.93496 0.98034 1.18341 0.90008 0.85517 1.01455 1.21371 0.93471 0.97686 0.97075 1.86142 1.70523 1.31383 1.35754 1.23482 0.92294 1.03752 0.83627 1.22435 0.98180 0.78800 1.06175 1.48042 1.62833 1.07926 1.16054 1.21219 0.74704 0.86255 0.85573 1.90548 1.55207 1.17708 1.81947 1.19324 0.96099 0.97407 0.89787 0.91193 1.21996 0.95270 1.01026 1.01442 1.20945 1.42518 1.01105 0.91050 0.96098 1.26010 0.95376 1.01932 0.95450 1.70072 1.49900 1.38412 1.00627 0.85777 0.79001 0.79601 0.77719 1.18980 1.22677 1.14338 1.20683 0.88000 1.01202 0.87403 0.91947 0.84625 0.91355 0.82033 0.83681 0.83694 0.83163 0.93338 0.87025 0.86988 0.93946 0.93053 0.90041 0.92342 0.89260 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.61 9.80 -56.15 -0.55 -8.16 16 3 C 0.52 13.41 7.90 70.33 0.56 13.96 16 4 O -0.53 -15.98 16.12 19.92 0.32 -15.66 16 5 C -0.13 -3.25 5.87 -20.12 -0.12 -3.37 16 6 C -0.06 -1.46 9.62 22.59 0.22 -1.24 16 7 C -0.11 -2.78 9.69 22.14 0.21 -2.56 16 8 C -0.10 -2.84 5.52 -19.48 -0.11 -2.95 16 9 C 0.09 2.43 5.58 22.53 0.13 2.55 16 10 C -0.08 -2.05 9.54 22.68 0.22 -1.83 16 11 O -0.32 -7.68 9.90 -89.00 -0.88 -8.56 16 12 C 0.04 0.91 6.69 71.72 0.48 1.39 16 13 C 0.07 1.46 5.99 86.14 0.52 1.98 16 14 N -0.62 -18.98 2.68 -825.84 -2.22 -21.20 16 15 C 0.53 22.33 6.65 87.66 0.58 22.91 16 16 O -0.58 -29.17 15.51 -3.02 -0.05 -29.22 16 17 C 0.00 -0.21 1.41 -12.29 -0.02 -0.22 16 18 H 0.07 2.71 5.16 -2.39 -0.01 2.70 16 19 C -0.14 -5.30 8.46 71.98 0.61 -4.69 16 20 C -0.52 -30.03 8.90 25.60 0.23 -29.80 16 21 H 0.02 1.43 7.49 -2.91 -0.02 1.41 16 22 C 0.01 0.53 5.45 84.65 0.46 0.99 16 23 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 24 Si 0.95 41.22 24.32 68.60 1.67 42.89 16 25 H -0.26 -10.85 6.91 99.48 0.69 -10.16 16 26 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.22 -7.82 6.53 99.48 0.65 -7.18 16 28 C 0.15 4.06 5.69 85.95 0.49 4.54 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.16 3.14 7.60 -2.91 -0.02 3.11 16 33 H 0.15 3.62 8.00 -2.91 -0.02 3.60 16 34 H 0.15 3.70 7.64 -2.91 -0.02 3.68 16 35 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.23 7.87 -2.39 -0.02 1.22 16 37 H 0.11 2.44 5.24 -2.39 -0.01 2.43 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.91 3.42 -2.39 -0.01 1.91 16 41 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.09 2.66 6.91 -2.39 -0.02 2.64 16 44 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.47 359.08 5.20 -75.26 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.96 Total: 20.87 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.65 Total: 3.26 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.92 Total: -80.70 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.16 Total: -61.59 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.67 Total: 42.89 kcal Total: -80.47 5.20 -75.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890502554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.480 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds