Wall clock time and date at job start Tue Mar 31 2020 17:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99910 * 2 1 4 4 C 1.52999 * 109.47055 * 59.99920 * 3 2 1 5 5 C 1.50699 * 109.47134 * 299.99863 * 3 2 1 6 6 O 1.20820 * 120.00077 * 142.23812 * 5 3 2 7 7 O 1.34234 * 120.00120 * 322.24004 * 5 3 2 8 8 C 1.50692 * 109.46826 * 179.97438 * 3 2 1 9 9 O 1.21282 * 119.99971 * 141.49278 * 8 3 2 10 10 N 1.34778 * 120.00457 * 321.49267 * 8 3 2 11 11 C 1.47231 * 121.33021 * 174.89079 * 10 8 3 12 12 C 1.52788 * 107.88028 * 116.09198 * 11 10 8 13 13 C 1.50563 * 110.88049 * 47.41684 * 12 11 10 14 14 C 1.41410 * 117.64768 * 159.94746 * 13 12 11 15 15 C 1.41396 * 119.96660 * 358.32157 * 14 13 12 16 16 H 1.08000 * 120.00281 * 332.67252 * 15 14 13 17 17 C 1.39949 * 119.99782 * 152.40331 * 15 14 13 18 18 N 1.30819 * 120.00280 * 334.67055 * 17 15 14 19 19 Si 1.86802 * 119.99886 * 154.67571 * 17 15 14 20 20 H 1.48498 * 109.47501 * 94.98182 * 19 17 15 21 21 H 1.48504 * 109.47196 * 214.98395 * 19 17 15 22 22 H 1.48507 * 109.47219 * 334.98248 * 19 17 15 23 23 C 1.40409 * 120.06346 * 178.59327 * 14 13 12 24 24 C 1.37644 * 119.54480 * 359.90660 * 23 14 13 25 25 C 1.38332 * 119.98591 * 0.64129 * 24 23 14 26 26 C 1.37050 * 122.98491 * 339.27247 * 13 12 11 27 27 C 1.46661 * 121.32640 * 354.86862 * 10 8 3 28 28 H 1.09007 * 109.46717 * 59.99970 * 1 2 3 29 29 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47012 * 300.00328 * 1 2 3 31 31 H 1.08994 * 109.46883 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46820 * 299.99980 * 4 3 2 33 33 H 1.08995 * 109.47048 * 59.99726 * 4 3 2 34 34 H 0.96693 * 117.00333 * 180.02562 * 7 5 3 35 35 H 1.08999 * 109.77989 * 235.68179 * 11 10 8 36 36 H 1.08997 * 109.78086 * 356.44445 * 11 10 8 37 37 H 1.08996 * 109.19602 * 287.05164 * 12 11 10 38 38 H 1.09005 * 109.19423 * 167.77727 * 12 11 10 39 39 H 0.96998 * 120.00043 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.22819 * 180.11458 * 23 14 13 41 41 H 1.07993 * 120.00732 * 180.37725 * 24 23 14 42 42 H 1.07996 * 119.47861 * 179.62140 * 25 24 23 43 43 H 1.08999 * 109.42842 * 104.41706 * 27 10 8 44 44 H 1.08993 * 109.42947 * 344.57254 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5656 2.0534 -1.2305 6 8 1.3236 3.2352 -1.1646 7 8 1.4384 1.4064 -2.3997 8 6 3.5125 1.1865 0.0006 9 8 4.1822 1.9578 -0.6532 10 7 4.1119 0.2229 0.7277 11 6 5.5672 0.0089 0.6635 12 6 6.1466 0.3069 2.0455 13 6 5.3442 -0.3742 3.1221 14 6 5.9635 -0.5685 4.3784 15 6 7.3027 -0.1604 4.5763 16 1 7.9846 -0.1210 3.7397 17 6 7.7432 0.1980 5.8554 18 7 6.8877 0.6354 6.7432 19 14 9.5529 0.0519 6.2950 20 1 10.2209 1.3613 6.0842 21 1 9.6857 -0.3479 7.7191 22 1 10.1909 -0.9740 5.4314 23 6 5.2517 -1.1716 5.4277 24 6 3.9496 -1.5689 5.2243 25 6 3.3557 -1.3850 3.9886 26 6 4.0526 -0.7937 2.9375 27 6 3.3406 -0.6540 1.6149 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.0025 3.0603 1.2494 32 1 0.4722 2.1508 1.2492 33 1 1.8804 1.5238 2.1392 34 1 1.1508 1.9283 -3.1612 35 1 5.7762 -1.0256 0.3913 36 1 6.0066 0.6804 -0.0741 37 1 6.1331 1.3835 2.2152 38 1 7.1762 -0.0486 2.0867 39 1 7.1931 0.8841 7.6296 40 1 5.7215 -1.3197 6.3889 41 1 3.3932 -2.0280 6.0280 42 1 2.3357 -1.7054 3.8363 43 1 3.2370 -1.6361 1.1535 44 1 2.3521 -0.2252 1.7787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902247206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:51 Heat of formation + Delta-G solvation = -138.332792 kcal Electronic energy + Delta-G solvation = -29925.045991 eV Core-core repulsion = 25807.612424 eV Total energy + Delta-G solvation = -4117.433567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.37395 -39.68982 -38.24400 -37.87197 -36.38828 -35.56807 -33.71609 -32.43995 -31.41001 -30.20247 -28.85168 -27.59550 -25.66551 -25.26026 -24.84281 -23.36054 -21.68056 -20.64312 -20.08973 -18.72100 -18.62166 -17.70270 -17.25599 -16.83317 -15.98284 -15.90534 -15.50170 -15.30283 -14.94863 -14.76990 -14.58693 -14.27782 -13.73584 -13.52838 -13.42390 -13.30248 -12.94962 -12.61962 -12.54189 -12.41912 -12.22417 -11.88001 -11.72704 -11.68827 -11.54582 -11.47940 -11.28532 -11.11210 -11.05408 -10.64954 -10.53727 -10.34258 -10.04500 -9.88711 -9.64289 -9.38710 -9.08345 -8.34387 -7.41091 -7.31293 -6.87313 -4.38866 1.80887 2.36730 2.58256 2.72105 2.81821 3.03926 3.05017 3.07687 3.17441 3.55381 3.89398 4.32611 4.42999 4.51053 4.85478 5.01593 5.07381 5.33583 5.34118 5.39743 5.43875 5.49154 5.63307 5.79441 5.85021 5.91197 5.95636 6.07277 6.21961 6.25027 6.34511 6.39957 6.48982 6.68054 6.74750 6.88889 7.05669 7.08588 7.24879 7.51015 7.56442 7.63603 7.81842 7.93096 7.98869 8.11378 8.19504 8.54493 8.81003 8.89298 10.09838 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.003456 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.170739 B = 8099.139298 C = 8760.549375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.346 6.346 3 C 0.116 3.884 4 C -0.173 4.173 5 C 0.482 3.518 6 O -0.494 6.494 7 O -0.501 6.501 8 C 0.543 3.457 9 O -0.536 6.536 10 N -0.580 5.580 11 C 0.111 3.889 12 C -0.067 4.067 13 C -0.175 4.175 14 C 0.120 3.880 15 C -0.470 4.470 16 H 0.083 0.917 17 C 0.085 3.915 18 N -0.783 5.783 19 Si 0.897 3.103 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.171 4.171 24 C -0.098 4.098 25 C -0.238 4.238 26 C -0.078 4.078 27 C 0.156 3.844 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.281 0.719 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 -1.926 -9.931 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.264 6.264 3 C 0.071 3.929 4 C -0.230 4.230 5 C 0.321 3.679 6 O -0.381 6.381 7 O -0.312 6.312 8 C 0.327 3.673 9 O -0.414 6.414 10 N -0.310 5.310 11 C -0.010 4.010 12 C -0.105 4.105 13 C -0.177 4.177 14 C 0.118 3.882 15 C -0.499 4.499 16 H 0.101 0.899 17 C -0.135 4.135 18 N -0.407 5.407 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.190 4.190 24 C -0.116 4.116 25 C -0.258 4.258 26 C -0.078 4.078 27 C 0.034 3.966 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.850 -1.495 -9.681 13.891 hybrid contribution 0.294 0.522 0.040 0.601 sum -9.556 -0.973 -9.641 13.609 Atomic orbital electron populations 1.23029 0.80132 1.04183 1.00661 1.88227 1.20768 1.23085 1.94336 1.21617 0.93982 0.85482 0.91830 1.22415 1.03215 1.02385 0.95034 1.23395 0.73545 0.86135 0.84788 1.90720 1.45392 1.16354 1.85589 1.84606 1.80319 1.46629 1.19639 1.19180 0.86691 0.81240 0.80150 1.90761 1.64304 1.41958 1.44349 1.47904 1.09115 1.32201 1.41772 1.21842 0.78325 1.01550 0.99314 1.20412 0.99063 1.00179 0.90835 1.19214 0.93551 1.08111 0.96819 1.17519 0.92506 0.88218 0.90004 1.19549 0.95827 1.40372 0.94111 0.89918 1.25858 0.99708 0.91979 0.95943 1.69864 1.37135 1.28029 1.05666 0.86482 0.83079 0.79699 0.78629 1.19574 1.20034 1.18256 1.21016 0.94580 1.03631 0.99805 1.20535 0.95525 1.00038 0.95526 1.20105 0.98990 1.12537 0.94120 1.19188 0.94227 1.01079 0.93349 1.20736 0.94378 0.93765 0.87697 0.93685 0.88031 0.92676 0.89046 0.90138 0.88440 0.73218 0.90883 0.89497 0.92042 0.90336 0.90788 0.87731 0.89363 0.89375 0.90886 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.27 101.05 1.04 1.18 16 2 O -0.35 -4.31 7.23 -48.11 -0.35 -4.66 16 3 C 0.12 1.66 0.64 -92.93 -0.06 1.60 16 4 C -0.17 -2.25 7.49 37.16 0.28 -1.97 16 5 C 0.48 6.84 5.27 36.00 0.19 7.03 16 6 O -0.49 -7.95 16.82 -18.75 -0.32 -8.27 16 7 O -0.50 -5.67 12.72 -44.20 -0.56 -6.23 16 8 C 0.54 9.53 6.65 -10.99 -0.07 9.46 16 9 O -0.54 -10.85 15.71 5.56 0.09 -10.76 16 10 N -0.58 -10.04 2.94 -174.39 -0.51 -10.55 16 11 C 0.11 1.92 6.44 -3.75 -0.02 1.90 16 12 C -0.07 -1.34 5.29 -28.06 -0.15 -1.49 16 13 C -0.18 -3.93 5.81 -103.91 -0.60 -4.54 16 14 C 0.12 2.99 5.52 -106.67 -0.59 2.40 16 15 C -0.47 -11.73 8.26 -37.74 -0.31 -12.04 16 16 H 0.08 1.98 6.33 -52.49 -0.33 1.64 16 17 C 0.08 2.05 4.91 -17.34 -0.09 1.96 16 18 N -0.78 -19.64 11.67 55.55 0.65 -18.99 16 19 Si 0.90 18.01 29.63 -169.99 -5.04 12.98 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.17 -4.20 8.71 -38.98 -0.34 -4.54 16 24 C -0.10 -2.14 10.03 -39.76 -0.40 -2.54 16 25 C -0.24 -4.82 9.63 -39.15 -0.38 -5.20 16 26 C -0.08 -1.58 5.82 -104.59 -0.61 -2.18 16 27 C 0.16 2.58 4.87 -5.03 -0.02 2.56 16 28 H 0.04 0.37 6.80 -51.93 -0.35 0.02 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.42 6.42 -51.93 -0.33 0.09 16 31 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 32 H 0.08 0.83 6.54 -51.93 -0.34 0.49 16 33 H 0.10 1.30 6.50 -51.93 -0.34 0.96 16 34 H 0.41 2.60 9.10 45.56 0.41 3.01 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.47 7.09 -51.93 -0.37 1.11 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.53 6.39 -51.93 -0.33 1.20 16 39 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 40 H 0.10 2.66 6.66 -52.49 -0.35 2.31 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.09 1.54 8.05 -52.49 -0.42 1.12 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.41 3.94 -51.93 -0.20 1.21 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -30.89 354.27 -7.45 -38.34 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.61 Total: 9.24 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.14 Total: -6.43 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.14 Total: -29.54 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.14 Total: -29.92 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.89 -7.45 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902247206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.994 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds