Wall clock time and date at job start Tue Mar 31 2020 16:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46693 * 2 1 4 4 N 1.46507 * 109.46437 * 185.83831 * 3 2 1 5 5 C 1.46494 * 120.00203 * 273.19484 * 4 3 2 6 6 H 1.08995 * 109.47468 * 174.46803 * 5 4 3 7 7 C 1.53002 * 109.47146 * 54.46625 * 5 4 3 8 8 C 1.50698 * 109.47243 * 294.46930 * 5 4 3 9 9 O 1.20825 * 120.00497 * 359.97438 * 8 5 4 10 10 O 1.34230 * 120.00000 * 179.97438 * 8 5 4 11 11 C 1.45207 * 117.00108 * 179.97438 * 10 8 5 12 12 S 1.65604 * 119.99931 * 93.20301 * 4 3 2 13 13 O 1.42101 * 104.27539 * 333.92392 * 12 4 3 14 14 O 1.42104 * 104.27559 * 206.06845 * 12 4 3 15 15 C 1.81404 * 104.45085 * 89.99374 * 12 4 3 16 16 C 1.53001 * 109.46754 * 186.25623 * 15 12 4 17 17 C 1.50699 * 115.55316 * 299.60494 * 16 15 12 18 18 H 1.07994 * 120.00010 * 95.15302 * 17 16 15 19 19 C 1.37883 * 119.99630 * 274.88135 * 17 16 15 20 20 N 1.31511 * 120.00171 * 355.82919 * 19 17 16 21 21 Si 1.86800 * 119.99628 * 175.82964 * 19 17 16 22 22 H 1.48497 * 109.47536 * 59.99450 * 21 19 17 23 23 H 1.48498 * 109.47187 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46982 * 299.99652 * 21 19 17 25 25 C 1.52997 * 117.49606 * 85.27864 * 16 15 12 26 26 C 1.53000 * 117.49542 * 153.93511 * 16 15 12 27 27 H 1.09002 * 109.46679 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46677 * 299.99810 * 1 2 3 29 29 H 1.08995 * 109.46903 * 60.00118 * 1 2 3 30 30 H 1.08996 * 109.46677 * 240.00190 * 2 1 3 31 31 H 1.08997 * 109.46864 * 120.00424 * 2 1 3 32 32 H 1.08995 * 109.47257 * 65.84402 * 3 2 1 33 33 H 1.08995 * 109.47372 * 305.83592 * 3 2 1 34 34 H 1.08992 * 109.47121 * 172.37956 * 7 5 4 35 35 H 1.08998 * 109.47056 * 292.38126 * 7 5 4 36 36 H 1.09000 * 109.46785 * 52.37988 * 7 5 4 37 37 H 1.08997 * 109.46926 * 60.00080 * 11 10 8 38 38 H 1.08996 * 109.47204 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47172 * 300.00272 * 11 10 8 40 40 H 1.08995 * 109.46706 * 66.26098 * 15 12 4 41 41 H 1.08998 * 109.47092 * 306.25906 * 15 12 4 42 42 H 0.96995 * 119.99628 * 185.01096 * 20 19 17 43 43 H 1.08995 * 117.49829 * 214.99788 * 25 16 15 44 44 H 1.08999 * 117.49973 * 0.02562 * 25 16 15 45 45 H 1.09004 * 117.50061 * 359.97438 * 26 16 15 46 46 H 1.08995 * 117.50009 * 144.97054 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4983 1.4448 -0.1405 5 6 4.3488 1.3324 1.0469 6 1 5.3918 1.2530 0.7407 7 6 3.9541 0.0854 1.8408 8 6 4.1704 2.5547 1.9102 9 8 3.4111 3.4302 1.5685 10 8 4.8550 2.6708 3.0589 11 6 4.6338 3.8751 3.8394 12 16 4.1853 1.5748 -1.6417 13 8 3.2009 1.0531 -2.5239 14 8 5.4519 0.9458 -1.5031 15 6 4.3852 3.3599 -1.8951 16 6 4.8720 3.6210 -3.3219 17 6 6.1964 2.9983 -3.6811 18 1 6.2255 2.0397 -4.1777 19 6 7.3710 3.6551 -3.3808 20 7 7.3348 4.8603 -2.8558 21 14 9.0137 2.8328 -3.7196 22 1 9.1291 2.5364 -5.1701 23 1 10.1154 3.7409 -3.3113 24 1 9.1026 1.5675 -2.9473 25 6 3.8139 3.7155 -4.4230 26 6 4.5368 4.9774 -3.9454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7646 1.9252 0.9376 33 1 1.5938 1.9856 -0.8331 34 1 4.6702 -0.0739 2.6469 35 1 2.9580 0.2227 2.2615 36 1 3.9528 -0.7810 1.1793 37 1 3.5820 3.9397 4.1176 38 1 5.2469 3.8422 4.7400 39 1 4.9070 4.7478 3.2461 40 1 5.1157 3.7479 -1.1853 41 1 3.4282 3.8582 -1.7407 42 1 8.1587 5.3515 -2.7119 43 1 4.0758 3.3272 -5.4072 44 1 2.7711 3.5920 -4.1309 45 1 3.9692 5.6835 -3.3393 46 1 5.2744 5.4195 -4.6151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907705662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:50 Heat of formation + Delta-G solvation = -132.557194 kcal Electronic energy + Delta-G solvation = -29242.307435 eV Core-core repulsion = 25260.568269 eV Total energy + Delta-G solvation = -3981.739167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.60522 -37.59515 -36.72293 -36.43490 -36.10438 -35.10757 -33.32594 -32.02335 -30.65297 -28.17961 -27.79086 -26.20202 -25.43267 -23.94375 -21.55918 -21.14968 -20.86317 -19.53385 -18.51279 -17.76462 -17.11992 -16.85940 -16.46179 -16.24390 -15.62154 -15.06483 -14.75800 -14.59264 -14.18962 -13.93298 -13.85023 -13.62630 -13.38052 -13.11790 -12.94558 -12.56386 -12.26715 -12.12016 -12.01195 -11.92811 -11.78770 -11.63661 -11.43238 -11.27892 -11.15316 -11.02658 -10.98799 -10.88032 -10.82934 -10.58723 -10.52425 -10.45209 -10.29506 -10.06285 -9.64953 -9.06360 -8.97038 -8.51526 -8.05670 -6.11594 -4.25326 0.95057 2.18459 2.58040 3.24283 3.33468 3.35751 3.44796 4.38699 4.48979 4.59115 4.70698 4.82854 4.98647 5.02604 5.03407 5.10846 5.12639 5.16165 5.21055 5.23518 5.36917 5.43432 5.54497 5.62731 5.71305 5.77726 5.84835 5.91155 5.94939 6.03505 6.05358 6.28252 6.30444 6.35247 6.39001 6.42113 6.65904 6.69417 6.75483 7.03197 7.24320 7.47968 7.72994 7.80317 8.21086 8.80706 9.47090 10.94828 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.005342 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.645458 B = 5240.523633 C = 6213.516345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.127 3.873 4 N -0.990 5.990 5 C 0.156 3.844 6 H 0.142 0.858 7 C -0.151 4.151 8 C 0.447 3.553 9 O -0.492 6.492 10 O -0.358 6.358 11 C 0.035 3.965 12 S 2.603 3.397 13 O -0.959 6.959 14 O -0.946 6.946 15 C -0.550 4.550 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.067 0.933 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.266 1.266 25 C -0.207 4.207 26 C -0.134 4.134 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.263 0.737 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 -5.216 13.209 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.191 4.191 3 C 0.002 3.998 4 N -0.823 5.823 5 C 0.047 3.953 6 H 0.160 0.840 7 C -0.210 4.210 8 C 0.287 3.713 9 O -0.378 6.378 10 O -0.274 6.274 11 C -0.059 4.059 12 S 2.702 3.298 13 O -0.949 6.949 14 O -0.936 6.936 15 C -0.683 4.683 16 C 0.036 3.964 17 C -0.556 4.556 18 H 0.085 0.915 19 C -0.123 4.123 20 N -0.509 5.509 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.244 4.244 26 C -0.173 4.173 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.932 -5.546 12.737 16.515 hybrid contribution 0.756 0.857 0.248 1.169 sum -8.176 -4.689 12.984 16.045 Atomic orbital electron populations 1.21694 0.95485 1.01661 1.01821 1.22207 0.96053 0.97558 1.03295 1.21258 0.78264 0.96866 1.03389 1.58104 1.13692 1.88586 1.21959 1.20379 0.98558 0.90670 0.85688 0.84022 1.22161 1.02442 0.95968 1.00387 1.24519 0.77574 0.88912 0.80294 1.90655 1.35059 1.41064 1.71046 1.86512 1.63767 1.43477 1.33609 1.23263 1.02285 0.85533 0.94853 1.05490 0.73569 0.79019 0.71714 1.93504 1.60752 1.78082 1.62596 1.93529 1.42009 1.73961 1.84086 1.29982 1.07799 1.22029 1.08478 1.18291 0.93870 0.99671 0.84561 1.20494 0.88316 1.05989 1.40805 0.91457 1.24961 0.99293 0.94651 0.93372 1.70001 1.28067 1.10835 1.41974 0.86684 0.82550 0.80126 0.79143 1.19912 1.21110 1.19029 1.23169 0.95936 1.04984 1.00321 1.22503 1.01192 0.90291 1.03304 0.92640 0.92982 0.92335 0.90663 0.91271 0.90440 0.90044 0.90209 0.91575 0.90017 0.92068 0.88171 0.91675 0.85642 0.88056 0.92695 0.89569 0.90946 0.91714 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.15 -1.84 5.80 -26.73 -0.16 -2.00 16 3 C 0.13 1.77 4.26 -4.04 -0.02 1.75 16 4 N -0.99 -15.91 2.37 -108.54 -0.26 -16.16 16 5 C 0.16 2.22 3.14 -69.09 -0.22 2.01 16 6 H 0.14 2.12 6.79 -51.93 -0.35 1.76 16 7 C -0.15 -1.58 7.65 37.16 0.28 -1.30 16 8 C 0.45 6.50 7.02 36.00 0.25 6.75 16 9 O -0.49 -8.15 14.67 -18.75 -0.28 -8.43 16 10 O -0.36 -4.52 10.49 -39.26 -0.41 -4.93 16 11 C 0.03 0.34 10.56 101.05 1.07 1.41 16 12 S 2.60 53.86 5.01 -107.50 -0.54 53.32 16 13 O -0.96 -20.91 16.57 -57.54 -0.95 -21.86 16 14 O -0.95 -22.08 16.03 -57.54 -0.92 -23.00 16 15 C -0.55 -12.17 6.05 37.16 0.22 -11.94 16 16 C 0.04 0.96 1.47 -155.66 -0.23 0.73 16 17 C -0.52 -14.37 7.90 -34.44 -0.27 -14.64 16 18 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 19 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 20 N -0.87 -24.44 12.65 55.43 0.70 -23.73 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 C -0.21 -4.66 9.95 -26.70 -0.27 -4.92 16 26 C -0.13 -3.16 9.17 -26.69 -0.24 -3.40 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 31 H 0.07 0.72 5.27 -51.93 -0.27 0.44 16 32 H 0.08 0.99 6.70 -51.93 -0.35 0.64 16 33 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.62 6.75 -51.93 -0.35 0.26 16 36 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.13 2.92 8.14 -51.93 -0.42 2.49 16 41 H 0.10 1.99 8.11 -51.93 -0.42 1.57 16 42 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 43 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -33.01 387.48 -8.70 -41.71 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.56 Total: 5.24 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 0.70 Total: -24.52 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.44 Total: -39.90 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -2.56 Total: -58.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.54 Total: 53.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.01 -8.70 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907705662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.846 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds