Wall clock time and date at job start Tue Mar 31 2020 16:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46693 * 2 1 4 4 N 1.46507 * 109.46437 * 185.83831 * 3 2 1 5 5 C 1.46494 * 120.00203 * 273.19484 * 4 3 2 6 6 H 1.08995 * 109.47468 * 174.46803 * 5 4 3 7 7 C 1.53002 * 109.47146 * 54.46625 * 5 4 3 8 8 C 1.50698 * 109.47243 * 294.46930 * 5 4 3 9 9 O 1.20825 * 120.00497 * 359.97438 * 8 5 4 10 10 O 1.34230 * 120.00000 * 179.97438 * 8 5 4 11 11 C 1.45207 * 117.00108 * 179.97438 * 10 8 5 12 12 S 1.65604 * 119.99931 * 93.20301 * 4 3 2 13 13 O 1.42101 * 104.27539 * 333.92392 * 12 4 3 14 14 O 1.42104 * 104.27559 * 206.06845 * 12 4 3 15 15 C 1.81404 * 104.45085 * 89.99374 * 12 4 3 16 16 C 1.53001 * 109.46754 * 186.25623 * 15 12 4 17 17 C 1.50699 * 115.55316 * 299.60494 * 16 15 12 18 18 H 1.07994 * 120.00010 * 95.15302 * 17 16 15 19 19 C 1.37883 * 119.99630 * 274.88135 * 17 16 15 20 20 N 1.31511 * 120.00171 * 355.82919 * 19 17 16 21 21 Si 1.86800 * 119.99628 * 175.82964 * 19 17 16 22 22 H 1.48497 * 109.47536 * 59.99450 * 21 19 17 23 23 H 1.48498 * 109.47187 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46982 * 299.99652 * 21 19 17 25 25 C 1.52997 * 117.49606 * 85.27864 * 16 15 12 26 26 C 1.53000 * 117.49542 * 153.93511 * 16 15 12 27 27 H 1.09002 * 109.46679 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46677 * 299.99810 * 1 2 3 29 29 H 1.08995 * 109.46903 * 60.00118 * 1 2 3 30 30 H 1.08996 * 109.46677 * 240.00190 * 2 1 3 31 31 H 1.08997 * 109.46864 * 120.00424 * 2 1 3 32 32 H 1.08995 * 109.47257 * 65.84402 * 3 2 1 33 33 H 1.08995 * 109.47372 * 305.83592 * 3 2 1 34 34 H 1.08992 * 109.47121 * 172.37956 * 7 5 4 35 35 H 1.08998 * 109.47056 * 292.38126 * 7 5 4 36 36 H 1.09000 * 109.46785 * 52.37988 * 7 5 4 37 37 H 1.08997 * 109.46926 * 60.00080 * 11 10 8 38 38 H 1.08996 * 109.47204 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47172 * 300.00272 * 11 10 8 40 40 H 1.08995 * 109.46706 * 66.26098 * 15 12 4 41 41 H 1.08998 * 109.47092 * 306.25906 * 15 12 4 42 42 H 0.96995 * 119.99628 * 185.01096 * 20 19 17 43 43 H 1.08995 * 117.49829 * 214.99788 * 25 16 15 44 44 H 1.08999 * 117.49973 * 0.02562 * 25 16 15 45 45 H 1.09004 * 117.50061 * 359.97438 * 26 16 15 46 46 H 1.08995 * 117.50009 * 144.97054 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4983 1.4448 -0.1405 5 6 4.3488 1.3324 1.0469 6 1 5.3918 1.2530 0.7407 7 6 3.9541 0.0854 1.8408 8 6 4.1704 2.5547 1.9102 9 8 3.4111 3.4302 1.5685 10 8 4.8550 2.6708 3.0589 11 6 4.6338 3.8751 3.8394 12 16 4.1853 1.5748 -1.6417 13 8 3.2009 1.0531 -2.5239 14 8 5.4519 0.9458 -1.5031 15 6 4.3852 3.3599 -1.8951 16 6 4.8720 3.6210 -3.3219 17 6 6.1964 2.9983 -3.6811 18 1 6.2255 2.0397 -4.1777 19 6 7.3710 3.6551 -3.3808 20 7 7.3348 4.8603 -2.8558 21 14 9.0137 2.8328 -3.7196 22 1 9.1291 2.5364 -5.1701 23 1 10.1154 3.7409 -3.3113 24 1 9.1026 1.5675 -2.9473 25 6 3.8139 3.7155 -4.4230 26 6 4.5368 4.9774 -3.9454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7646 1.9252 0.9376 33 1 1.5938 1.9856 -0.8331 34 1 4.6702 -0.0739 2.6469 35 1 2.9580 0.2227 2.2615 36 1 3.9528 -0.7810 1.1793 37 1 3.5820 3.9397 4.1176 38 1 5.2469 3.8422 4.7400 39 1 4.9070 4.7478 3.2461 40 1 5.1157 3.7479 -1.1853 41 1 3.4282 3.8582 -1.7407 42 1 8.1587 5.3515 -2.7119 43 1 4.0758 3.3272 -5.4072 44 1 2.7711 3.5920 -4.1309 45 1 3.9692 5.6835 -3.3393 46 1 5.2744 5.4195 -4.6151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907705662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:49 Heat of formation + Delta-G solvation = -153.272543 kcal Electronic energy + Delta-G solvation = -29243.205720 eV Core-core repulsion = 25260.568269 eV Total energy + Delta-G solvation = -3982.637452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70470 -38.72192 -38.57876 -38.12386 -37.26013 -36.81606 -34.31447 -34.11227 -31.71884 -29.94279 -28.63724 -27.55858 -27.13989 -24.99342 -23.01343 -22.51793 -22.06744 -21.36460 -19.95488 -19.12444 -18.42281 -18.35701 -17.96142 -17.33944 -17.03944 -16.74713 -16.63162 -16.05231 -15.66119 -15.23688 -15.01086 -14.84999 -14.75409 -14.30669 -14.00352 -13.85591 -13.75318 -13.50110 -13.30797 -13.15037 -13.06675 -12.98543 -12.91430 -12.84674 -12.82307 -12.52684 -12.48527 -12.44336 -12.27606 -12.05500 -11.92906 -11.80564 -11.63859 -11.50201 -11.29640 -11.01197 -10.55381 -10.31603 -9.86532 -8.21063 -6.39582 -0.66826 1.06103 1.36933 1.41151 1.45941 1.48882 1.91887 2.37758 2.89015 3.03573 3.21204 3.35993 3.40474 3.78291 3.88455 3.96084 4.00061 4.14871 4.18718 4.28641 4.30979 4.33988 4.44795 4.48650 4.55769 4.68811 4.72009 4.73078 4.78882 4.79960 4.93660 4.96586 5.01932 5.14163 5.15702 5.23113 5.29198 5.35948 5.38096 5.45534 5.56491 5.58147 5.67385 6.17637 6.63995 6.68235 7.34390 8.85035 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.005342 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.645458 B = 5240.523633 C = 6213.516345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.121 3.879 4 N -0.982 5.982 5 C 0.145 3.855 6 H 0.130 0.870 7 C -0.147 4.147 8 C 0.450 3.550 9 O -0.518 6.518 10 O -0.357 6.357 11 C 0.027 3.973 12 S 2.623 3.377 13 O -0.973 6.973 14 O -0.978 6.978 15 C -0.553 4.553 16 C 0.007 3.993 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.042 3.958 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.191 4.191 26 C -0.134 4.134 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.266 0.734 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -6.007 15.029 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C -0.004 4.004 4 N -0.818 5.818 5 C 0.037 3.963 6 H 0.148 0.852 7 C -0.205 4.205 8 C 0.291 3.709 9 O -0.406 6.406 10 O -0.272 6.272 11 C -0.066 4.066 12 S 2.721 3.279 13 O -0.963 6.963 14 O -0.968 6.968 15 C -0.685 4.685 16 C 0.005 3.995 17 C -0.573 4.573 18 H 0.070 0.930 19 C -0.161 4.161 20 N -0.530 5.530 21 Si 0.758 3.242 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.229 4.229 26 C -0.174 4.174 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.890 -6.322 14.546 18.692 hybrid contribution 1.021 1.120 -0.226 1.532 sum -8.870 -5.202 14.320 17.630 Atomic orbital electron populations 1.21694 0.93797 1.02714 1.02263 1.22209 0.97502 0.96037 1.03217 1.21522 0.76577 0.98381 1.03872 1.57715 1.14837 1.88148 1.21129 1.20665 0.97726 0.92550 0.85364 0.85241 1.22209 1.04013 0.93797 1.00472 1.24501 0.77205 0.88466 0.80710 1.90642 1.36349 1.41816 1.71767 1.86497 1.63105 1.44647 1.32957 1.23576 1.03755 0.83971 0.95304 1.04629 0.72840 0.77929 0.72549 1.93475 1.60801 1.77907 1.64130 1.93480 1.43978 1.74286 1.85079 1.29933 1.08108 1.24170 1.06282 1.18435 0.93958 1.00583 0.86541 1.20688 0.90150 1.05614 1.40892 0.92976 1.25575 1.01931 0.95183 0.93438 1.70066 1.28751 1.11576 1.42645 0.85971 0.79719 0.79166 0.79306 1.19049 1.19732 1.19701 1.23219 0.96635 1.03442 0.99561 1.22423 1.01192 0.90496 1.03239 0.91311 0.91365 0.93116 0.92920 0.89205 0.88915 0.90712 0.87998 0.89896 0.89783 0.91160 0.84750 0.92952 0.87433 0.86022 0.92533 0.89622 0.88523 0.90215 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.99 0.71 -1.90 16 2 C -0.15 -3.36 5.80 30.60 0.18 -3.18 16 3 C 0.12 3.17 4.26 86.38 0.37 3.54 16 4 N -0.98 -30.87 2.37 -497.31 -1.18 -32.05 16 5 C 0.15 3.99 3.14 44.25 0.14 4.13 16 6 H 0.13 3.89 6.79 -2.39 -0.02 3.87 16 7 C -0.15 -2.71 7.65 71.98 0.55 -2.16 16 8 C 0.45 12.54 7.02 71.24 0.50 13.04 16 9 O -0.52 -16.66 14.67 21.97 0.32 -16.34 16 10 O -0.36 -8.38 10.49 -51.41 -0.54 -8.92 16 11 C 0.03 0.48 10.56 113.37 1.20 1.67 16 12 S 2.62 109.31 5.01 -56.49 -0.28 109.02 16 13 O -0.97 -42.42 16.57 -127.65 -2.12 -44.54 16 14 O -0.98 -46.63 16.03 -127.65 -2.05 -48.67 16 15 C -0.55 -24.74 6.05 71.98 0.44 -24.31 16 16 C 0.01 0.35 1.47 -52.93 -0.08 0.27 16 17 C -0.54 -30.33 7.90 25.60 0.20 -30.13 16 18 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 19 C 0.04 2.33 5.43 84.66 0.46 2.79 16 20 N -0.89 -50.79 12.65 21.45 0.27 -50.52 16 21 Si 0.93 44.51 29.54 68.60 2.03 46.54 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 25 C -0.19 -8.55 9.95 30.62 0.30 -8.25 16 26 C -0.13 -6.39 9.17 30.62 0.28 -6.11 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.42 7.70 -2.39 -0.02 1.40 16 31 H 0.09 1.60 5.27 -2.39 -0.01 1.59 16 32 H 0.09 2.17 6.70 -2.39 -0.02 2.16 16 33 H 0.07 2.05 7.67 -2.39 -0.02 2.03 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.26 6.75 -2.39 -0.02 1.24 16 36 H 0.08 1.54 7.70 -2.39 -0.02 1.52 16 37 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 38 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 40 H 0.11 5.15 8.14 -2.39 -0.02 5.13 16 41 H 0.12 4.76 8.11 -2.39 -0.02 4.74 16 42 H 0.27 14.31 8.32 -92.71 -0.77 13.53 16 43 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 46 H 0.07 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -71.55 387.48 2.67 -68.88 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.96 Total: 27.17 kcal Atomic # 6 Polarization: -55.82 SS G_CDS: 5.25 Total: -50.57 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -0.91 Total: -82.57 kcal Atomic # 8 Polarization: -114.09 SS G_CDS: -4.38 Total: -118.47 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 109.31 SS G_CDS: -0.28 Total: 109.02 kcal Total: -71.55 2.67 -68.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907705662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.391 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds