Wall clock time and date at job start Tue Mar 31 2020 17:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 O 1.45195 * 109.47452 * 120.00521 * 2 1 3 5 5 C 1.34231 * 117.00734 * 149.99877 * 4 2 1 6 6 O 1.20827 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00396 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.46715 * 204.99706 * 7 5 4 9 9 C 1.52997 * 109.46771 * 84.99927 * 7 5 4 10 10 N 1.46499 * 109.47085 * 324.99939 * 7 5 4 11 11 S 1.65592 * 120.00094 * 188.67257 * 10 7 5 12 12 O 1.42103 * 104.27482 * 318.93359 * 11 10 7 13 13 O 1.42098 * 104.28101 * 191.07701 * 11 10 7 14 14 C 1.81405 * 104.45186 * 75.00340 * 11 10 7 15 15 C 1.52996 * 109.47154 * 183.04079 * 14 11 10 16 16 C 1.50702 * 115.54942 * 299.27393 * 15 14 11 17 17 H 1.07995 * 120.00178 * 93.67947 * 16 15 14 18 18 C 1.37880 * 119.99803 * 273.68199 * 16 15 14 19 19 N 1.31520 * 120.00036 * 6.15868 * 18 16 15 20 20 Si 1.86796 * 120.00037 * 186.15504 * 18 16 15 21 21 H 1.48498 * 109.47532 * 270.00114 * 20 18 16 22 22 H 1.48504 * 109.47032 * 30.00159 * 20 18 16 23 23 H 1.48503 * 109.47092 * 149.99939 * 20 18 16 24 24 C 1.52995 * 117.50195 * 84.94238 * 15 14 11 25 25 C 1.52997 * 117.49914 * 153.60510 * 15 14 11 26 26 H 1.08999 * 109.46640 * 300.00056 * 1 2 3 27 27 H 1.08997 * 109.47053 * 59.99774 * 1 2 3 28 28 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47266 * 240.00156 * 2 1 3 30 30 H 1.09002 * 109.46380 * 60.00150 * 3 2 1 31 31 H 1.08998 * 109.46961 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47196 * 300.00138 * 3 2 1 33 33 H 1.09000 * 109.46952 * 189.48551 * 8 7 5 34 34 H 1.08998 * 109.47400 * 309.48800 * 8 7 5 35 35 H 1.09003 * 109.46851 * 69.49020 * 8 7 5 36 36 H 1.08998 * 109.47058 * 299.99403 * 9 7 5 37 37 H 1.09000 * 109.47688 * 60.00192 * 9 7 5 38 38 H 1.09010 * 109.46690 * 180.02562 * 9 7 5 39 39 H 0.97008 * 119.99777 * 8.66847 * 10 7 5 40 40 H 1.09003 * 109.47025 * 63.03615 * 14 11 10 41 41 H 1.09006 * 109.46673 * 303.04028 * 14 11 10 42 42 H 0.96995 * 119.99685 * 355.19682 * 19 18 16 43 43 H 1.08997 * 117.50191 * 215.00266 * 24 15 14 44 44 H 1.09001 * 117.49658 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49963 * 359.97135 * 25 15 14 46 46 H 1.09001 * 117.49934 * 144.97014 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0141 -0.6845 1.1854 5 6 3.1937 -1.3171 1.0850 6 8 3.8015 -1.2997 0.0409 7 6 3.7601 -2.0489 2.2745 8 6 5.2821 -2.1333 2.1439 9 6 3.1739 -3.4610 2.3309 10 7 3.4144 -1.3273 3.5017 11 16 4.0848 -1.7816 4.9461 12 8 4.0634 -3.2020 4.9110 13 8 3.3412 -1.0615 5.9196 14 6 5.7903 -1.1686 4.8663 15 6 6.5453 -1.5960 6.1265 16 6 5.9844 -1.0801 7.4266 17 1 5.2860 -1.6812 7.9897 18 6 6.3630 0.1594 7.8971 19 7 7.1168 0.9420 7.1561 20 14 5.8052 0.7272 9.5871 21 1 4.5103 1.4440 9.4661 22 1 5.6376 -0.4514 10.4749 23 1 6.8245 1.6404 10.1638 24 6 7.1770 -2.9894 6.1332 25 6 8.0643 -1.7470 6.0229 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 5.6759 -2.8024 2.9090 34 1 5.5415 -2.5170 1.1572 35 1 5.7134 -1.1405 2.2726 36 1 2.0896 -3.4008 2.4239 37 1 3.4310 -3.9980 1.4178 38 1 3.5832 -3.9902 3.1915 39 1 2.7928 -0.5833 3.4681 40 1 5.7826 -0.0807 4.7987 41 1 6.2848 -1.5837 3.9880 42 1 7.4639 0.6208 6.3093 43 1 7.1870 -3.5330 7.0778 44 1 7.0551 -3.6015 5.2395 45 1 8.5257 -1.5423 5.0568 46 1 8.6580 -1.4727 6.8949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908487200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:31 Heat of formation + Delta-G solvation = -140.253394 kcal Electronic energy + Delta-G solvation = -28858.980934 eV Core-core repulsion = 24876.908035 eV Total energy + Delta-G solvation = -3982.072899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02304 -37.79659 -37.12031 -36.70887 -36.04766 -35.20971 -33.34794 -31.98359 -30.52238 -28.89803 -27.60450 -27.09537 -25.16237 -24.77007 -21.64899 -21.43514 -20.48241 -19.73625 -18.84500 -18.52348 -17.37967 -16.91105 -16.58876 -16.06619 -15.52144 -15.26038 -14.65862 -14.51832 -14.27467 -13.96193 -13.73554 -13.57014 -13.47876 -13.36829 -12.85766 -12.62928 -12.58704 -12.57734 -12.35777 -12.21565 -12.04158 -11.76942 -11.65137 -11.45599 -11.33999 -11.22459 -11.06527 -11.04777 -10.79319 -10.77038 -10.65888 -10.40451 -10.25432 -10.10259 -9.83240 -9.50553 -8.66463 -8.48786 -8.35516 -6.46397 -4.25258 0.89039 1.93140 2.32183 3.23482 3.46141 3.48769 3.64121 4.23747 4.40411 4.46642 4.48414 4.58532 4.59630 4.71422 4.78774 4.80961 4.94387 5.07944 5.21382 5.22774 5.36414 5.40510 5.43673 5.46717 5.50165 5.57942 5.70454 5.71740 5.75045 5.82328 5.85335 6.01933 6.06610 6.14414 6.23530 6.32071 6.41122 6.51137 6.73352 6.99303 7.06014 7.15491 7.52839 8.01707 8.33301 8.76362 9.53616 10.93719 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.003938 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.862277 B = 7108.006883 C = 7691.939154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.172 4.172 4 O -0.346 6.346 5 C 0.475 3.525 6 O -0.500 6.500 7 C 0.203 3.797 8 C -0.190 4.190 9 C -0.186 4.186 10 N -1.123 6.123 11 S 2.616 3.384 12 O -0.966 6.966 13 O -0.938 6.938 14 C -0.581 4.581 15 C 0.021 3.979 16 C -0.591 4.591 17 H 0.063 0.937 18 C 0.040 3.960 19 N -0.899 5.899 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.191 4.191 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.420 0.580 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.275 0.725 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -2.950 -15.142 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.230 4.230 4 O -0.263 6.263 5 C 0.316 3.684 6 O -0.387 6.387 7 C 0.112 3.888 8 C -0.248 4.248 9 C -0.244 4.244 10 N -0.881 5.881 11 S 2.713 3.287 12 O -0.956 6.956 13 O -0.928 6.928 14 C -0.713 4.713 15 C 0.019 3.981 16 C -0.628 4.628 17 H 0.081 0.919 18 C -0.168 4.168 19 N -0.532 5.532 20 Si 0.893 3.107 21 H -0.208 1.208 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.229 4.229 25 C -0.203 4.203 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.254 0.746 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.835 -2.242 -13.778 16.520 hybrid contribution 0.281 -0.412 -1.774 1.842 sum -8.553 -2.654 -15.552 17.946 Atomic orbital electron populations 1.21900 0.92209 1.03286 1.03342 1.22805 0.95154 0.92836 0.86853 1.22235 1.02312 0.95078 1.03344 1.86567 1.36290 1.62176 1.41228 1.23628 0.79218 0.75821 0.89778 1.90650 1.59469 1.58068 1.30468 1.19914 0.95543 0.92507 0.80840 1.22800 0.91602 1.04500 1.05854 1.22768 1.02617 0.93041 1.05973 1.56220 1.61438 1.47365 1.23037 1.04949 0.77506 0.74779 0.71471 1.93420 1.87455 1.29319 1.85414 1.93576 1.69021 1.74076 1.56172 1.30551 1.21740 1.12343 1.06648 1.18554 0.92238 0.95552 0.91755 1.21415 1.30604 1.06069 1.04711 0.91927 1.25807 0.94393 0.92670 1.03897 1.70739 1.31761 1.36801 1.13940 0.83596 0.76549 0.75986 0.74543 1.20835 1.21075 1.20960 1.23072 1.07106 0.91166 1.01534 1.22783 0.94618 1.02054 1.00805 0.91084 0.90344 0.91618 0.89696 0.91148 0.91839 0.90625 0.89367 0.88527 0.90101 0.91135 0.91138 0.85993 0.74571 0.85595 0.86973 0.91330 0.89243 0.90582 0.91159 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.57 37.16 0.36 -0.74 16 2 C 0.08 0.76 3.18 -26.73 -0.09 0.68 16 3 C -0.17 -1.54 9.55 37.16 0.35 -1.18 16 4 O -0.35 -4.23 9.02 -39.26 -0.35 -4.58 16 5 C 0.47 6.36 6.75 36.01 0.24 6.60 16 6 O -0.50 -7.29 15.11 -18.75 -0.28 -7.57 16 7 C 0.20 2.76 1.04 -132.97 -0.14 2.63 16 8 C -0.19 -2.43 6.45 37.16 0.24 -2.19 16 9 C -0.19 -2.37 8.37 37.16 0.31 -2.06 16 10 N -1.12 -17.06 5.39 -0.40 0.00 -17.06 16 11 S 2.62 51.26 4.71 -107.50 -0.51 50.75 16 12 O -0.97 -19.35 14.37 -57.54 -0.83 -20.17 16 13 O -0.94 -22.28 17.42 -57.54 -1.00 -23.28 16 14 C -0.58 -11.61 5.17 37.16 0.19 -11.42 16 15 C 0.02 0.50 0.99 -155.67 -0.15 0.35 16 16 C -0.59 -16.10 7.78 -34.44 -0.27 -16.37 16 17 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 18 C 0.04 1.09 5.38 -17.82 -0.10 1.00 16 19 N -0.90 -25.57 13.56 55.43 0.75 -24.82 16 20 Si 1.07 25.21 29.91 -169.99 -5.08 20.13 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.19 -4.00 9.95 -26.70 -0.27 -4.27 16 25 C -0.16 -3.54 8.55 -26.70 -0.23 -3.77 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.85 7.16 -51.93 -0.37 0.48 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.13 6.06 -51.93 -0.31 0.81 16 34 H 0.10 1.10 7.51 -51.93 -0.39 0.71 16 35 H 0.08 1.01 7.10 -51.93 -0.37 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.77 5.32 -51.92 -0.28 1.49 16 39 H 0.42 5.85 7.95 -34.47 -0.27 5.58 16 40 H 0.13 2.61 8.02 -51.92 -0.42 2.19 16 41 H 0.11 1.84 4.40 -51.92 -0.23 1.61 16 42 H 0.28 7.61 6.28 -40.82 -0.26 7.35 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -33.08 378.85 -8.31 -41.39 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.18 Total: 10.27 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 0.46 Total: -30.76 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.75 Total: -41.88 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -2.47 Total: -55.60 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Atomic # 16 Polarization: 51.26 SS G_CDS: -0.51 Total: 50.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.08 -8.31 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908487200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.863 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds