Wall clock time and date at job start Tue Mar 31 2020 17:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 O 1.45195 * 109.47452 * 120.00521 * 2 1 3 5 5 C 1.34231 * 117.00734 * 149.99877 * 4 2 1 6 6 O 1.20827 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00396 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.46715 * 204.99706 * 7 5 4 9 9 C 1.52997 * 109.46771 * 84.99927 * 7 5 4 10 10 N 1.46499 * 109.47085 * 324.99939 * 7 5 4 11 11 S 1.65592 * 120.00094 * 188.67257 * 10 7 5 12 12 O 1.42103 * 104.27482 * 318.93359 * 11 10 7 13 13 O 1.42098 * 104.28101 * 191.07701 * 11 10 7 14 14 C 1.81405 * 104.45186 * 75.00340 * 11 10 7 15 15 C 1.52996 * 109.47154 * 183.04079 * 14 11 10 16 16 C 1.50702 * 115.54942 * 299.27393 * 15 14 11 17 17 H 1.07995 * 120.00178 * 93.67947 * 16 15 14 18 18 C 1.37880 * 119.99803 * 273.68199 * 16 15 14 19 19 N 1.31520 * 120.00036 * 6.15868 * 18 16 15 20 20 Si 1.86796 * 120.00037 * 186.15504 * 18 16 15 21 21 H 1.48498 * 109.47532 * 270.00114 * 20 18 16 22 22 H 1.48504 * 109.47032 * 30.00159 * 20 18 16 23 23 H 1.48503 * 109.47092 * 149.99939 * 20 18 16 24 24 C 1.52995 * 117.50195 * 84.94238 * 15 14 11 25 25 C 1.52997 * 117.49914 * 153.60510 * 15 14 11 26 26 H 1.08999 * 109.46640 * 300.00056 * 1 2 3 27 27 H 1.08997 * 109.47053 * 59.99774 * 1 2 3 28 28 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47266 * 240.00156 * 2 1 3 30 30 H 1.09002 * 109.46380 * 60.00150 * 3 2 1 31 31 H 1.08998 * 109.46961 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47196 * 300.00138 * 3 2 1 33 33 H 1.09000 * 109.46952 * 189.48551 * 8 7 5 34 34 H 1.08998 * 109.47400 * 309.48800 * 8 7 5 35 35 H 1.09003 * 109.46851 * 69.49020 * 8 7 5 36 36 H 1.08998 * 109.47058 * 299.99403 * 9 7 5 37 37 H 1.09000 * 109.47688 * 60.00192 * 9 7 5 38 38 H 1.09010 * 109.46690 * 180.02562 * 9 7 5 39 39 H 0.97008 * 119.99777 * 8.66847 * 10 7 5 40 40 H 1.09003 * 109.47025 * 63.03615 * 14 11 10 41 41 H 1.09006 * 109.46673 * 303.04028 * 14 11 10 42 42 H 0.96995 * 119.99685 * 355.19682 * 19 18 16 43 43 H 1.08997 * 117.50191 * 215.00266 * 24 15 14 44 44 H 1.09001 * 117.49658 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49963 * 359.97135 * 25 15 14 46 46 H 1.09001 * 117.49934 * 144.97014 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0141 -0.6845 1.1854 5 6 3.1937 -1.3171 1.0850 6 8 3.8015 -1.2997 0.0409 7 6 3.7601 -2.0489 2.2745 8 6 5.2821 -2.1333 2.1439 9 6 3.1739 -3.4610 2.3309 10 7 3.4144 -1.3273 3.5017 11 16 4.0848 -1.7816 4.9461 12 8 4.0634 -3.2020 4.9110 13 8 3.3412 -1.0615 5.9196 14 6 5.7903 -1.1686 4.8663 15 6 6.5453 -1.5960 6.1265 16 6 5.9844 -1.0801 7.4266 17 1 5.2860 -1.6812 7.9897 18 6 6.3630 0.1594 7.8971 19 7 7.1168 0.9420 7.1561 20 14 5.8052 0.7272 9.5871 21 1 4.5103 1.4440 9.4661 22 1 5.6376 -0.4514 10.4749 23 1 6.8245 1.6404 10.1638 24 6 7.1770 -2.9894 6.1332 25 6 8.0643 -1.7470 6.0229 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 5.6759 -2.8024 2.9090 34 1 5.5415 -2.5170 1.1572 35 1 5.7134 -1.1405 2.2726 36 1 2.0896 -3.4008 2.4239 37 1 3.4310 -3.9980 1.4178 38 1 3.5832 -3.9902 3.1915 39 1 2.7928 -0.5833 3.4681 40 1 5.7826 -0.0807 4.7987 41 1 6.2848 -1.5837 3.9880 42 1 7.4639 0.6208 6.3093 43 1 7.1870 -3.5330 7.0778 44 1 7.0551 -3.6015 5.2395 45 1 8.5257 -1.5423 5.0568 46 1 8.6580 -1.4727 6.8949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908487200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:30 Heat of formation + Delta-G solvation = -162.042339 kcal Electronic energy + Delta-G solvation = -28859.925774 eV Core-core repulsion = 24876.908035 eV Total energy + Delta-G solvation = -3983.017738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02861 -38.98564 -38.76956 -38.02708 -37.40924 -36.84226 -34.11045 -34.01897 -31.71896 -30.37630 -28.27726 -28.23297 -27.01324 -25.94977 -23.13142 -22.52975 -21.75757 -21.28083 -20.32667 -19.64868 -18.79860 -18.60635 -17.77356 -17.15410 -17.07476 -16.61940 -15.93463 -15.67707 -15.60018 -15.46622 -15.19290 -14.96007 -14.64294 -14.49065 -14.20623 -13.96807 -13.82806 -13.54586 -13.40837 -13.20648 -13.16408 -13.00881 -12.96679 -12.77373 -12.75057 -12.69212 -12.58906 -12.43124 -12.28565 -12.06006 -11.95664 -11.92962 -11.63844 -11.54966 -11.34251 -10.85256 -10.55817 -10.51048 -10.12412 -8.60034 -6.37858 -0.65972 0.87820 1.38951 1.53081 1.59688 1.77485 1.85480 2.54594 2.86467 3.13089 3.17874 3.25798 3.29191 3.60895 3.70547 3.76306 3.78185 3.90239 3.97016 4.10321 4.16622 4.35232 4.41848 4.44634 4.57194 4.62239 4.63117 4.71587 4.73303 4.75063 4.81766 4.83360 4.85657 5.00037 5.05144 5.10887 5.18902 5.27350 5.32445 5.40616 5.45205 5.85229 6.03321 6.18387 6.52447 6.66622 7.44525 8.82118 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.003938 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.862277 B = 7108.006883 C = 7691.939154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.171 4.171 4 O -0.352 6.352 5 C 0.480 3.520 6 O -0.513 6.513 7 C 0.196 3.804 8 C -0.198 4.198 9 C -0.187 4.187 10 N -1.111 6.111 11 S 2.632 3.368 12 O -0.971 6.971 13 O -0.987 6.987 14 C -0.577 4.577 15 C -0.014 4.014 16 C -0.602 4.602 17 H 0.041 0.959 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 1.093 2.907 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.178 4.178 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.426 0.574 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.272 0.728 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -3.417 -16.987 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 C -0.229 4.229 4 O -0.269 6.269 5 C 0.321 3.679 6 O -0.400 6.400 7 C 0.106 3.894 8 C -0.256 4.256 9 C -0.245 4.245 10 N -0.871 5.871 11 S 2.728 3.272 12 O -0.962 6.962 13 O -0.977 6.977 14 C -0.709 4.709 15 C -0.016 4.016 16 C -0.640 4.640 17 H 0.059 0.941 18 C -0.205 4.205 19 N -0.555 5.555 20 Si 0.916 3.084 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.200 1.200 24 C -0.215 4.215 25 C -0.197 4.197 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.262 0.738 40 H 0.133 0.867 41 H 0.167 0.833 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.252 -2.718 -15.620 18.357 hybrid contribution 0.361 -0.311 -1.300 1.385 sum -8.891 -3.030 -16.921 19.353 Atomic orbital electron populations 1.21929 0.90210 1.03709 1.04462 1.23133 0.96702 0.92888 0.85796 1.22254 1.01169 0.94870 1.04560 1.86564 1.35669 1.62063 1.42606 1.23448 0.79439 0.75693 0.89314 1.90645 1.59921 1.58638 1.30825 1.20142 0.96442 0.92833 0.79991 1.22891 0.90844 1.04828 1.07005 1.22771 1.02839 0.92437 1.06494 1.55794 1.61010 1.47745 1.22579 1.04257 0.77091 0.74241 0.71586 1.93417 1.87451 1.29470 1.85812 1.93512 1.70259 1.75055 1.58888 1.30478 1.22080 1.11840 1.06508 1.18639 0.93581 0.97795 0.91624 1.21626 1.30040 1.05863 1.06434 0.94089 1.26803 0.94384 0.93221 1.06126 1.70810 1.33163 1.37202 1.14361 0.83251 0.76520 0.76357 0.72226 1.20549 1.19792 1.20048 1.23157 1.05110 0.90503 1.02710 1.22747 0.93410 1.02326 1.01266 0.91216 0.87951 0.91562 0.89956 0.91167 0.93584 0.88231 0.89205 0.86782 0.89885 0.90689 0.88774 0.87478 0.73813 0.86676 0.83276 0.91695 0.89919 0.87364 0.88439 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.57 71.98 0.69 -1.12 16 2 C 0.07 1.22 3.18 30.59 0.10 1.32 16 3 C -0.17 -2.79 9.55 71.98 0.69 -2.10 16 4 O -0.35 -8.11 9.02 -51.42 -0.46 -8.57 16 5 C 0.48 12.03 6.75 71.24 0.48 12.51 16 6 O -0.51 -13.99 15.11 21.96 0.33 -13.66 16 7 C 0.20 4.98 1.04 2.86 0.00 4.98 16 8 C -0.20 -4.58 6.45 71.98 0.46 -4.12 16 9 C -0.19 -4.40 8.37 71.98 0.60 -3.80 16 10 N -1.11 -32.68 5.39 -155.19 -0.84 -33.51 16 11 S 2.63 101.96 4.71 -56.49 -0.27 101.70 16 12 O -0.97 -37.95 14.37 -127.65 -1.83 -39.79 16 13 O -0.99 -47.69 17.42 -127.65 -2.22 -49.91 16 14 C -0.58 -22.54 5.17 71.98 0.37 -22.17 16 15 C -0.01 -0.66 0.99 -52.93 -0.05 -0.71 16 16 C -0.60 -33.30 7.78 25.60 0.20 -33.10 16 17 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 18 C 0.00 -0.16 5.38 84.65 0.46 0.30 16 19 N -0.92 -52.86 13.56 21.45 0.29 -52.57 16 20 Si 1.09 51.17 29.91 68.60 2.05 53.22 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 C -0.18 -7.14 9.95 30.62 0.30 -6.84 16 25 C -0.16 -6.70 8.55 30.62 0.26 -6.43 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.52 7.16 -2.38 -0.02 1.50 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.09 2.04 6.06 -2.39 -0.01 2.03 16 34 H 0.11 2.26 7.51 -2.39 -0.02 2.24 16 35 H 0.08 1.88 7.10 -2.39 -0.02 1.86 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 2.91 5.32 -2.38 -0.01 2.90 16 39 H 0.43 11.62 7.95 -96.74 -0.77 10.85 16 40 H 0.11 4.76 8.02 -2.39 -0.02 4.74 16 41 H 0.15 4.55 4.40 -2.39 -0.01 4.54 16 42 H 0.27 15.18 6.28 -92.71 -0.58 14.59 16 43 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 45 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -71.47 378.85 2.02 -69.45 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.40 Total: 34.91 kcal Atomic # 6 Polarization: -65.84 SS G_CDS: 4.57 Total: -61.27 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -0.55 Total: -86.08 kcal Atomic # 8 Polarization: -107.74 SS G_CDS: -4.19 Total: -111.93 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Atomic # 16 Polarization: 101.96 SS G_CDS: -0.27 Total: 101.70 kcal Total: -71.47 2.02 -69.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908487200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.589 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds