Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21223 * 120.00278 * 2 1 4 4 C 1.47410 * 119.99309 * 179.97438 * 2 1 3 5 5 C 1.39805 * 120.01688 * 185.66246 * 4 2 1 6 6 C 1.37770 * 119.97571 * 179.97438 * 5 4 2 7 7 C 1.39614 * 120.02114 * 0.02562 * 6 5 4 8 8 C 1.47968 * 119.97772 * 179.97438 * 7 6 5 9 9 O 1.21438 * 119.99840 * 0.27576 * 8 7 6 10 10 O 1.34681 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00103 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46819 * 29.99376 * 11 10 8 13 13 C 1.52997 * 109.46866 * 269.99651 * 11 10 8 14 14 C 1.50701 * 109.47064 * 149.99653 * 11 10 8 15 15 O 1.21278 * 120.00002 * 8.64812 * 14 11 10 16 16 N 1.34779 * 119.99759 * 188.65428 * 14 11 10 17 17 C 1.46507 * 119.99923 * 4.57360 * 16 14 11 18 18 C 1.46494 * 119.99900 * 184.57387 * 16 14 11 19 19 C 1.50702 * 109.47152 * 90.00067 * 18 16 14 20 20 H 1.07998 * 120.00003 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99944 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00466 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47381 * 119.99895 * 23 21 19 26 26 H 1.48508 * 109.46657 * 239.99769 * 23 21 19 27 27 C 1.39608 * 120.04707 * 0.23772 * 7 6 5 28 28 C 1.37772 * 120.02069 * 359.48497 * 27 7 6 29 29 H 1.08998 * 109.47737 * 185.37442 * 1 2 3 30 30 H 1.08999 * 109.46820 * 305.38020 * 1 2 3 31 31 H 1.09008 * 109.46765 * 65.37588 * 1 2 3 32 32 H 1.08001 * 120.01489 * 359.96225 * 5 4 2 33 33 H 1.07995 * 119.99208 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47577 * 306.31400 * 13 11 10 35 35 H 1.09002 * 109.47064 * 66.31877 * 13 11 10 36 36 H 1.09002 * 109.46802 * 186.31472 * 13 11 10 37 37 H 1.09007 * 109.46740 * 86.08927 * 17 16 14 38 38 H 1.09000 * 109.46694 * 206.08717 * 17 16 14 39 39 H 1.08995 * 109.46959 * 326.09135 * 17 16 14 40 40 H 1.09006 * 109.47213 * 210.00075 * 18 16 14 41 41 H 1.09002 * 109.47370 * 330.00096 * 18 16 14 42 42 H 0.97001 * 120.00615 * 180.02562 * 22 21 19 43 43 H 1.08005 * 119.99246 * 179.74099 * 27 7 6 44 44 H 1.08001 * 120.01177 * 180.25048 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2439 -1.2767 0.0006 5 6 3.6369 -1.2802 0.1200 6 6 4.3247 -2.4739 0.1210 7 6 3.6311 -3.6798 0.0022 8 6 4.3709 -4.9613 0.0028 9 8 5.5804 -4.9641 0.1116 10 8 3.7024 -6.1248 -0.1123 11 6 4.4928 -7.3428 -0.1048 12 1 5.3894 -7.1903 0.4960 13 6 4.8936 -7.6994 -1.5376 14 6 3.6788 -8.4663 0.4836 15 8 2.4992 -8.3043 0.7141 16 7 4.2618 -9.6511 0.7537 17 6 5.7059 -9.8157 0.5699 18 6 3.4514 -10.7742 1.2312 19 6 2.9556 -11.5725 0.0531 20 1 3.2182 -11.2734 -0.9509 21 6 2.1666 -12.6847 0.2569 22 7 1.8472 -13.0492 1.4795 23 14 1.5527 -13.6746 -1.2034 24 1 2.0489 -13.0609 -2.4613 25 1 2.0529 -15.0692 -1.1016 26 1 0.0676 -13.6805 -1.2082 27 6 2.2407 -3.6771 -0.1227 28 6 1.5505 -2.4847 -0.1181 29 1 -0.3634 -1.0231 0.0962 30 1 -0.3633 0.5950 0.8379 31 1 -0.3633 0.4282 -0.9343 32 1 4.1736 -0.3474 0.2113 33 1 5.4006 -2.4769 0.2136 34 1 4.0028 -7.7418 -2.1643 35 1 5.5741 -6.9406 -1.9241 36 1 5.3896 -8.6700 -1.5452 37 1 6.2262 -9.4918 1.4713 38 1 5.9304 -10.8650 0.3780 39 1 6.0354 -9.2129 -0.2763 40 1 4.0580 -11.4128 1.8734 41 1 2.6004 -10.3939 1.7964 42 1 1.2924 -13.8319 1.6229 43 1 1.7054 -4.6103 -0.2187 44 1 0.4744 -2.4831 -0.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915563155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = -118.940223 kcal Electronic energy + Delta-G solvation = -27659.201404 eV Core-core repulsion = 23542.608762 eV Total energy + Delta-G solvation = -4116.592642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99059 -40.23413 -39.11164 -38.26696 -36.47101 -34.96575 -33.00548 -32.66639 -31.90768 -31.26735 -29.86876 -27.77836 -26.25741 -25.67568 -24.25882 -23.02908 -22.66380 -21.37358 -20.18495 -18.97676 -18.47572 -17.41374 -16.82130 -16.58277 -16.18982 -16.08328 -15.84100 -15.43809 -15.40110 -15.02625 -14.71207 -14.46679 -14.35493 -14.03901 -13.81517 -13.45258 -13.13127 -12.93379 -12.77823 -12.63082 -12.51130 -12.47350 -12.20404 -12.11892 -11.70368 -11.52692 -11.38262 -11.25322 -10.92871 -10.81085 -10.75147 -10.61505 -10.23495 -10.21526 -9.68051 -9.52990 -9.47645 -8.97682 -8.49765 -7.76990 -6.10367 -4.15769 -0.17720 0.91266 1.60056 2.29617 2.44508 3.17875 3.25901 3.33873 3.37519 3.39241 3.51611 3.80503 4.27112 4.37376 4.40495 4.47309 4.60163 4.77658 4.82594 4.87842 4.95210 4.96008 4.97202 5.04924 5.24326 5.31154 5.39164 5.41565 5.55980 5.62068 5.66676 5.77201 5.82756 5.84940 5.90033 6.02624 6.23187 6.28130 6.30675 6.93738 7.01153 7.35031 7.41539 7.55625 7.85503 8.14996 8.23865 8.78572 8.93789 9.49553 10.97771 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002291 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.254574 B =12217.556971 C =13150.759776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.396 3.604 3 O -0.455 6.455 4 C -0.143 4.143 5 C -0.076 4.076 6 C -0.068 4.068 7 C -0.089 4.089 8 C 0.504 3.496 9 O -0.503 6.503 10 O -0.318 6.318 11 C 0.072 3.928 12 H 0.105 0.895 13 C -0.171 4.171 14 C 0.510 3.490 15 O -0.521 6.521 16 N -0.595 5.595 17 C 0.066 3.934 18 C 0.245 3.755 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.070 4.070 28 C -0.087 4.087 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.153 0.847 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 21.629 -3.964 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.273 3.727 3 O -0.330 6.330 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.086 4.086 7 C -0.090 4.090 8 C 0.348 3.652 9 O -0.392 6.392 10 O -0.233 6.233 11 C 0.013 3.987 12 H 0.123 0.877 13 C -0.228 4.228 14 C 0.294 3.706 15 O -0.397 6.397 16 N -0.328 5.328 17 C -0.077 4.077 18 C 0.127 3.873 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.088 4.088 28 C -0.105 4.105 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.170 0.830 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.103 22.055 -3.690 22.576 hybrid contribution -0.151 -0.925 -0.747 1.198 sum 2.952 21.130 -4.436 21.792 Atomic orbital electron populations 1.22264 0.93253 1.05285 1.05213 1.22636 0.91908 0.87371 0.70738 1.90543 1.72135 1.34268 1.36038 1.20821 0.94797 0.95176 1.03622 1.21351 0.93054 0.98498 0.96527 1.21273 1.01230 0.90202 0.95913 1.19396 0.94040 0.90576 1.05005 1.21262 0.86068 0.84920 0.72910 1.90811 1.14830 1.87907 1.45669 1.86652 1.40466 1.13798 1.82419 1.22698 0.94523 0.81869 0.99581 0.87729 1.22311 1.03101 1.03478 0.93932 1.19724 0.87885 0.83139 0.79830 1.90693 1.15596 1.81419 1.51951 1.48063 1.08198 1.11780 1.64806 1.21991 0.81587 1.03739 1.00401 1.19379 0.90892 0.81730 0.95320 1.21451 1.31789 1.10393 0.93111 0.92289 1.24942 0.95805 0.97342 0.96015 1.69938 1.37287 1.26156 1.19820 0.86430 0.78753 0.79639 0.82521 1.19776 1.20924 1.20828 1.21655 0.92857 0.99701 0.94631 1.21546 1.00764 0.90855 0.97323 0.89411 0.88582 0.88385 0.83962 0.83707 0.90550 0.91206 0.88836 0.93367 0.90068 0.91657 0.94604 0.93566 0.92675 0.82952 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.93 10.16 36.01 0.37 -0.56 16 2 C 0.40 3.19 7.22 -30.57 -0.22 2.97 16 3 O -0.45 -5.13 17.09 5.61 0.10 -5.03 16 4 C -0.14 -1.20 5.87 -104.99 -0.62 -1.82 16 5 C -0.08 -0.68 9.58 -39.17 -0.38 -1.06 16 6 C -0.07 -0.67 9.58 -39.24 -0.38 -1.05 16 7 C -0.09 -1.02 5.88 -104.89 -0.62 -1.63 16 8 C 0.50 7.13 7.88 34.72 0.27 7.40 16 9 O -0.50 -7.70 15.59 -19.22 -0.30 -8.00 16 10 O -0.32 -5.10 8.67 -47.07 -0.41 -5.51 16 11 C 0.07 1.16 2.17 -27.88 -0.06 1.10 16 12 H 0.10 1.55 6.73 -51.93 -0.35 1.20 16 13 C -0.17 -2.32 9.15 37.16 0.34 -1.98 16 14 C 0.51 10.61 7.03 -10.98 -0.08 10.53 16 15 O -0.52 -13.04 16.08 -13.94 -0.22 -13.26 16 16 N -0.59 -12.33 2.86 -182.95 -0.52 -12.85 16 17 C 0.07 1.01 9.81 59.85 0.59 1.60 16 18 C 0.25 6.27 5.18 -5.20 -0.03 6.24 16 19 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 23 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 C -0.07 -0.70 9.60 -39.24 -0.38 -1.07 16 28 C -0.09 -0.66 9.39 -39.17 -0.37 -1.03 16 29 H 0.09 0.26 5.70 -51.93 -0.30 -0.04 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 33 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.19 5.45 -51.93 -0.28 0.91 16 37 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 39 H 0.07 0.82 4.30 -51.93 -0.22 0.60 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 1.34 7.36 -51.93 -0.38 0.95 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.15 1.55 7.60 -52.48 -0.40 1.15 16 44 H 0.15 0.67 6.02 -52.49 -0.32 0.35 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -35.17 379.16 -7.44 -42.62 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.55 Total: -1.08 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.97 Total: 6.38 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.21 Total: -38.15 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.84 Total: -31.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.17 -7.44 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915563155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.325 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds