Wall clock time and date at job start Tue Mar 31 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21223 * 120.00278 * 2 1 4 4 C 1.47410 * 119.99309 * 179.97438 * 2 1 3 5 5 C 1.39805 * 120.01688 * 185.66246 * 4 2 1 6 6 C 1.37770 * 119.97571 * 179.97438 * 5 4 2 7 7 C 1.39614 * 120.02114 * 0.02562 * 6 5 4 8 8 C 1.47968 * 119.97772 * 179.97438 * 7 6 5 9 9 O 1.21438 * 119.99840 * 0.27576 * 8 7 6 10 10 O 1.34681 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00103 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46819 * 29.99376 * 11 10 8 13 13 C 1.52997 * 109.46866 * 269.99651 * 11 10 8 14 14 C 1.50701 * 109.47064 * 149.99653 * 11 10 8 15 15 O 1.21278 * 120.00002 * 8.64812 * 14 11 10 16 16 N 1.34779 * 119.99759 * 188.65428 * 14 11 10 17 17 C 1.46507 * 119.99923 * 4.57360 * 16 14 11 18 18 C 1.46494 * 119.99900 * 184.57387 * 16 14 11 19 19 C 1.50702 * 109.47152 * 90.00067 * 18 16 14 20 20 H 1.07998 * 120.00003 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99944 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00466 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47381 * 119.99895 * 23 21 19 26 26 H 1.48508 * 109.46657 * 239.99769 * 23 21 19 27 27 C 1.39608 * 120.04707 * 0.23772 * 7 6 5 28 28 C 1.37772 * 120.02069 * 359.48497 * 27 7 6 29 29 H 1.08998 * 109.47737 * 185.37442 * 1 2 3 30 30 H 1.08999 * 109.46820 * 305.38020 * 1 2 3 31 31 H 1.09008 * 109.46765 * 65.37588 * 1 2 3 32 32 H 1.08001 * 120.01489 * 359.96225 * 5 4 2 33 33 H 1.07995 * 119.99208 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47577 * 306.31400 * 13 11 10 35 35 H 1.09002 * 109.47064 * 66.31877 * 13 11 10 36 36 H 1.09002 * 109.46802 * 186.31472 * 13 11 10 37 37 H 1.09007 * 109.46740 * 86.08927 * 17 16 14 38 38 H 1.09000 * 109.46694 * 206.08717 * 17 16 14 39 39 H 1.08995 * 109.46959 * 326.09135 * 17 16 14 40 40 H 1.09006 * 109.47213 * 210.00075 * 18 16 14 41 41 H 1.09002 * 109.47370 * 330.00096 * 18 16 14 42 42 H 0.97001 * 120.00615 * 180.02562 * 22 21 19 43 43 H 1.08005 * 119.99246 * 179.74099 * 27 7 6 44 44 H 1.08001 * 120.01177 * 180.25048 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2439 -1.2767 0.0006 5 6 3.6369 -1.2802 0.1200 6 6 4.3247 -2.4739 0.1210 7 6 3.6311 -3.6798 0.0022 8 6 4.3709 -4.9613 0.0028 9 8 5.5804 -4.9641 0.1116 10 8 3.7024 -6.1248 -0.1123 11 6 4.4928 -7.3428 -0.1048 12 1 5.3894 -7.1903 0.4960 13 6 4.8936 -7.6994 -1.5376 14 6 3.6788 -8.4663 0.4836 15 8 2.4992 -8.3043 0.7141 16 7 4.2618 -9.6511 0.7537 17 6 5.7059 -9.8157 0.5699 18 6 3.4514 -10.7742 1.2312 19 6 2.9556 -11.5725 0.0531 20 1 3.2182 -11.2734 -0.9509 21 6 2.1666 -12.6847 0.2569 22 7 1.8472 -13.0492 1.4795 23 14 1.5527 -13.6746 -1.2034 24 1 2.0489 -13.0609 -2.4613 25 1 2.0529 -15.0692 -1.1016 26 1 0.0676 -13.6805 -1.2082 27 6 2.2407 -3.6771 -0.1227 28 6 1.5505 -2.4847 -0.1181 29 1 -0.3634 -1.0231 0.0962 30 1 -0.3633 0.5950 0.8379 31 1 -0.3633 0.4282 -0.9343 32 1 4.1736 -0.3474 0.2113 33 1 5.4006 -2.4769 0.2136 34 1 4.0028 -7.7418 -2.1643 35 1 5.5741 -6.9406 -1.9241 36 1 5.3896 -8.6700 -1.5452 37 1 6.2262 -9.4918 1.4713 38 1 5.9304 -10.8650 0.3780 39 1 6.0354 -9.2129 -0.2763 40 1 4.0580 -11.4128 1.8734 41 1 2.6004 -10.3939 1.7964 42 1 1.2924 -13.8319 1.6229 43 1 1.7054 -4.6103 -0.2187 44 1 0.4744 -2.4831 -0.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915563155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:44 Heat of formation + Delta-G solvation = -139.488429 kcal Electronic energy + Delta-G solvation = -27660.092441 eV Core-core repulsion = 23542.608762 eV Total energy + Delta-G solvation = -4117.483679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09124 -41.10188 -40.51353 -39.13404 -37.68556 -36.70821 -34.89372 -33.59379 -32.98942 -32.19897 -30.41943 -29.63975 -27.68445 -26.63328 -25.78442 -24.31186 -23.62878 -22.48375 -20.90988 -20.48148 -19.52373 -18.69010 -18.44772 -17.92757 -17.43627 -17.31497 -16.96816 -16.57618 -16.29926 -16.20165 -16.05802 -15.76086 -15.16540 -14.98567 -14.84717 -14.68734 -14.35864 -14.21604 -13.83714 -13.70022 -13.60430 -13.58664 -13.31180 -13.07822 -13.03024 -12.99796 -12.87149 -12.64361 -12.38127 -12.20850 -12.16922 -11.99318 -11.87750 -11.66844 -10.89564 -10.65241 -10.64190 -10.30219 -10.18875 -9.52292 -8.22806 -6.37493 -0.95763 0.20439 0.79877 1.13670 1.38530 1.40584 1.51748 1.56176 1.59871 2.28882 2.42482 2.63607 2.92793 3.07583 3.34618 3.40474 3.62098 3.73283 3.78679 3.80737 4.03611 4.11728 4.20797 4.22911 4.43301 4.50643 4.57497 4.64563 4.66516 4.71466 4.83600 4.88656 4.91928 4.97046 5.09940 5.11055 5.12557 5.17677 5.21330 5.28601 5.51669 5.59658 5.78041 6.03271 6.40534 6.41209 6.59356 6.71719 7.18673 7.35805 8.84967 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002291 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.254574 B =12217.556971 C =13150.759776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.399 3.601 3 O -0.492 6.492 4 C -0.145 4.145 5 C -0.080 4.080 6 C -0.068 4.068 7 C -0.108 4.108 8 C 0.505 3.495 9 O -0.518 6.518 10 O -0.333 6.333 11 C 0.081 3.919 12 H 0.122 0.878 13 C -0.165 4.165 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.599 5.599 17 C 0.060 3.940 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.283 1.283 27 C -0.077 4.077 28 C -0.071 4.071 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.001 0.999 42 H 0.267 0.733 43 H 0.147 0.853 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.283 22.538 -5.577 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.370 6.370 4 C -0.146 4.146 5 C -0.098 4.098 6 C -0.086 4.086 7 C -0.110 4.110 8 C 0.351 3.649 9 O -0.408 6.408 10 O -0.249 6.249 11 C 0.023 3.977 12 H 0.140 0.860 13 C -0.222 4.222 14 C 0.288 3.712 15 O -0.455 6.455 16 N -0.332 5.332 17 C -0.082 4.082 18 C 0.138 3.862 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.208 1.208 27 C -0.095 4.095 28 C -0.089 4.089 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.019 0.981 42 H 0.076 0.924 43 H 0.164 0.836 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.268 22.966 -5.313 23.798 hybrid contribution -0.191 -1.128 -0.182 1.158 sum 3.077 21.838 -5.495 22.728 Atomic orbital electron populations 1.22326 0.90114 1.06951 1.06231 1.23117 0.93483 0.86339 0.69113 1.90541 1.73154 1.35297 1.37985 1.21073 0.94742 0.95943 1.02823 1.21498 0.93672 0.98359 0.96250 1.21301 1.01476 0.89919 0.95875 1.19399 0.94718 0.89627 1.07219 1.21698 0.86104 0.84963 0.72130 1.90787 1.15392 1.88001 1.46644 1.86657 1.41154 1.14282 1.82806 1.22571 0.93556 0.80541 1.01040 0.86047 1.22312 1.03267 1.04760 0.91814 1.20566 0.87698 0.84028 0.78863 1.90654 1.18179 1.82542 1.54136 1.48041 1.10138 1.10741 1.64241 1.22311 0.78236 1.04614 1.03008 1.18873 0.90069 0.82759 0.94525 1.21715 1.32084 1.10768 0.93437 0.92313 1.25868 0.95882 0.98537 0.98899 1.70056 1.37947 1.26814 1.21998 0.85348 0.77874 0.78386 0.79082 1.18827 1.19608 1.20850 1.21705 0.92355 1.00460 0.95028 1.21835 1.02328 0.89423 0.95310 0.87396 0.87733 0.87025 0.83306 0.83358 0.91419 0.88811 0.87821 0.90958 0.90140 0.88456 0.95249 0.98104 0.92376 0.83554 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 10.16 71.24 0.72 -0.48 16 2 C 0.40 5.67 7.22 28.10 0.20 5.88 16 3 O -0.49 -10.61 17.09 -2.85 -0.05 -10.66 16 4 C -0.14 -2.18 5.87 -20.11 -0.12 -2.29 16 5 C -0.08 -1.35 9.58 22.54 0.22 -1.13 16 6 C -0.07 -1.29 9.58 22.49 0.22 -1.07 16 7 C -0.11 -2.43 5.88 -20.04 -0.12 -2.55 16 8 C 0.51 14.10 7.88 70.40 0.55 14.66 16 9 O -0.52 -15.41 15.59 20.04 0.31 -15.10 16 10 O -0.33 -10.68 8.67 -49.56 -0.43 -11.10 16 11 C 0.08 2.55 2.17 29.85 0.06 2.62 16 12 H 0.12 3.41 6.73 -2.39 -0.02 3.39 16 13 C -0.16 -4.15 9.15 71.98 0.66 -3.49 16 14 C 0.50 21.22 7.03 87.66 0.62 21.83 16 15 O -0.58 -30.08 16.08 15.62 0.25 -29.83 16 16 N -0.60 -25.06 2.86 -851.11 -2.43 -27.49 16 17 C 0.06 1.73 9.81 127.77 1.25 2.98 16 18 C 0.26 13.69 5.18 85.64 0.44 14.13 16 19 C -0.54 -30.28 9.39 25.60 0.24 -30.04 16 20 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -55.21 13.29 21.44 0.28 -54.93 16 23 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 C -0.08 -1.46 9.60 22.49 0.22 -1.25 16 28 C -0.07 -0.93 9.39 22.54 0.21 -0.72 16 29 H 0.11 0.20 5.70 -2.39 -0.01 0.18 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.15 2.29 7.65 -2.91 -0.02 2.27 16 33 H 0.15 2.64 7.64 -2.91 -0.02 2.62 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 2.37 5.45 -2.39 -0.01 2.36 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 39 H 0.10 2.18 4.30 -2.39 -0.01 2.17 16 40 H 0.03 1.57 8.07 -2.38 -0.02 1.55 16 41 H 0.00 0.05 7.36 -2.39 -0.02 0.03 16 42 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.15 2.96 7.60 -2.91 -0.02 2.94 16 44 H 0.18 1.00 6.02 -2.91 -0.02 0.98 16 Total: -1.00 -79.37 379.16 6.85 -72.52 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.04 Total: 10.89 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 5.84 Total: 19.92 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.15 Total: -82.42 kcal Atomic # 8 Polarization: -66.77 SS G_CDS: 0.09 Total: -66.69 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.37 6.85 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915563155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.965 kcal (2) G-P(sol) polarization free energy of solvation -79.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds