Wall clock time and date at job start Tue Mar 31 2020 18:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.51218 * 2 1 4 4 C 1.52878 * 109.58390 * 239.97897 * 2 1 3 5 5 N 1.47145 * 108.60670 * 187.91970 * 4 2 1 6 6 C 1.34779 * 120.98356 * 230.50089 * 5 4 2 7 7 O 1.21279 * 120.00029 * 359.72384 * 6 5 4 8 8 C 1.50705 * 119.99941 * 179.72075 * 6 5 4 9 9 O 1.45203 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.34705 * 116.99902 * 180.02562 * 9 8 6 11 11 O 1.21462 * 119.99982 * 359.97438 * 10 9 8 12 12 C 1.47773 * 119.99723 * 179.97438 * 10 9 8 13 13 C 1.39966 * 120.02920 * 359.97438 * 12 10 9 14 14 C 1.38315 * 120.34831 * 179.97438 * 13 12 10 15 15 C 1.37760 * 120.42027 * 359.97438 * 14 13 12 16 16 C 1.40757 * 120.05156 * 0.02622 * 15 14 13 17 17 C 1.41440 * 120.17375 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99989 * 24.46053 * 17 16 15 19 19 C 1.39939 * 119.99559 * 204.45931 * 17 16 15 20 20 N 1.30826 * 119.99903 * 17.88002 * 19 17 16 21 21 Si 1.86795 * 119.99927 * 197.87430 * 19 17 16 22 22 H 1.48497 * 109.47085 * 60.00321 * 21 19 17 23 23 H 1.48497 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47265 * 300.00424 * 21 19 17 25 25 C 1.39049 * 120.02590 * 179.97438 * 12 10 9 26 26 C 1.47154 * 118.03469 * 50.23424 * 5 4 2 27 27 C 1.53293 * 108.38493 * 309.71006 * 26 5 4 28 28 O 1.42962 * 109.51018 * 120.09955 * 2 1 3 29 29 H 1.08998 * 109.46822 * 299.89843 * 1 2 3 30 30 H 1.08995 * 109.47180 * 59.90128 * 1 2 3 31 31 H 1.09001 * 109.46720 * 179.90298 * 1 2 3 32 32 H 1.08999 * 109.61517 * 68.10152 * 4 2 1 33 33 H 1.08995 * 109.52299 * 307.69131 * 4 2 1 34 34 H 1.08997 * 109.47137 * 60.00337 * 8 6 5 35 35 H 1.09001 * 109.47098 * 299.99821 * 8 6 5 36 36 H 1.07999 * 119.82854 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.78740 * 180.27595 * 14 13 12 38 38 H 1.08004 * 119.97272 * 180.02562 * 15 14 13 39 39 H 0.96999 * 119.99948 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.20477 * 0.04234 * 25 12 10 41 41 H 1.08994 * 109.68261 * 69.43797 * 26 5 4 42 42 H 1.09005 * 109.67989 * 189.95431 * 26 5 4 43 43 H 1.08994 * 109.51294 * 172.22946 * 27 26 5 44 44 H 1.09007 * 109.51367 * 292.38240 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0425 -0.7206 -1.2471 5 7 3.5012 -0.8767 -1.1331 6 6 4.3194 -0.5043 -2.1373 7 8 3.8556 -0.0373 -3.1559 8 6 5.8107 -0.6683 -1.9944 9 8 6.4671 -0.1977 -3.2010 10 6 7.8115 -0.2760 -3.2360 11 8 8.4187 -0.7246 -2.2846 12 6 8.5474 0.1840 -4.4321 13 6 7.8482 0.7006 -5.5291 14 6 8.5304 1.1334 -6.6517 15 6 9.9051 1.0618 -6.7033 16 6 10.6256 0.5453 -5.6100 17 6 12.0372 0.4711 -5.6600 18 1 12.5900 1.1336 -6.3095 19 6 12.7173 -0.4607 -4.8678 20 7 12.0737 -1.4792 -4.3579 21 14 14.5439 -0.2503 -4.5387 22 1 14.7768 1.0443 -3.8496 23 1 15.0234 -1.3623 -3.6793 24 1 15.2839 -0.2658 -5.8262 25 6 9.9351 0.1039 -4.4687 26 6 4.0407 -1.4457 0.1121 27 6 3.4313 -0.6849 1.2952 28 8 2.0075 -0.6758 1.1658 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 1.8044 -0.1325 -2.1334 33 1 1.5728 -1.7015 -1.3198 34 1 6.0472 -1.7208 -1.8386 35 1 6.1599 -0.0871 -1.1409 36 1 6.7703 0.7615 -5.4988 37 1 7.9820 1.5346 -7.4912 38 1 10.4305 1.4023 -7.5834 39 1 12.5452 -2.1252 -3.8091 40 1 10.4788 -0.2946 -3.6249 41 1 3.7757 -2.5009 0.1785 42 1 5.1253 -1.3381 0.1252 43 1 3.7092 -1.1776 2.2269 44 1 3.8030 0.3398 1.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919317897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:08 Heat of formation + Delta-G solvation = -140.514378 kcal Electronic energy + Delta-G solvation = -27846.260354 eV Core-core repulsion = 23728.732186 eV Total energy + Delta-G solvation = -4117.528167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.78090 -39.82112 -38.58207 -37.36035 -35.77445 -35.13379 -33.77679 -33.47163 -30.59415 -29.56442 -29.29198 -29.10306 -26.21609 -25.34018 -23.85539 -23.14210 -21.68169 -21.01179 -19.94401 -19.63645 -18.09193 -17.30465 -17.14760 -16.71982 -16.55435 -16.11297 -15.86021 -15.55110 -15.32747 -14.96626 -14.88393 -14.63346 -13.97807 -13.76222 -13.43664 -13.25536 -13.07857 -12.81896 -12.66971 -12.58559 -12.45718 -12.24231 -12.05590 -11.70598 -11.66069 -11.21508 -11.13913 -11.11658 -10.79138 -10.56783 -10.54311 -10.49963 -10.29187 -9.98464 -9.74408 -9.55752 -9.25750 -8.94806 -7.77782 -7.57631 -6.85275 -4.45845 1.90838 2.18934 2.32770 2.76869 3.04458 3.06063 3.12884 3.21483 3.27986 3.52163 3.88084 4.13695 4.23579 4.50782 4.54474 4.55310 4.63874 4.69935 4.84870 4.99447 5.02557 5.12918 5.14792 5.28507 5.35982 5.37041 5.51686 5.53043 5.54472 5.70732 5.98499 6.12463 6.43123 6.54950 6.69060 6.80018 6.90363 6.92485 6.94590 7.14515 7.28527 7.66052 7.73225 7.85512 7.88371 8.07533 8.40679 8.43331 8.74347 8.76440 10.10184 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002286 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.474059 B =12244.487482 C =13257.560732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.065 0.935 4 C 0.085 3.915 5 N -0.619 5.619 6 C 0.522 3.478 7 O -0.508 6.508 8 C 0.049 3.951 9 O -0.332 6.332 10 C 0.514 3.486 11 O -0.518 6.518 12 C -0.115 4.115 13 C -0.190 4.190 14 C -0.104 4.104 15 C -0.199 4.199 16 C 0.094 3.906 17 C -0.460 4.460 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.788 5.788 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.088 4.088 26 C 0.067 3.933 27 C 0.048 3.952 28 O -0.377 6.377 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.136 0.864 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 -0.344 11.321 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.037 4.037 5 N -0.357 5.357 6 C 0.309 3.691 7 O -0.382 6.382 8 C -0.029 4.029 9 O -0.248 6.248 10 C 0.362 3.638 11 O -0.407 6.407 12 C -0.117 4.117 13 C -0.210 4.210 14 C -0.122 4.122 15 C -0.219 4.219 16 C 0.092 3.908 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.413 5.413 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.108 4.108 26 C -0.056 4.056 27 C -0.029 4.029 28 O -0.296 6.296 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.825 -0.540 11.303 20.276 hybrid contribution 1.056 -0.137 0.245 1.093 sum -15.769 -0.677 11.548 19.557 Atomic orbital electron populations 1.21728 0.91936 1.03353 1.03056 1.22442 0.95794 0.95511 0.84831 0.91751 1.22267 0.79362 1.02208 0.99896 1.48033 1.06797 1.64315 1.16536 1.20225 0.88118 0.77723 0.83031 1.90750 1.76886 1.42605 1.27941 1.22523 0.89538 1.02110 0.88711 1.86701 1.22452 1.77033 1.38628 1.22023 0.79091 0.74581 0.88114 1.90759 1.68747 1.43741 1.37494 1.18773 0.93476 1.07648 0.91759 1.20647 0.98201 1.07412 0.94703 1.20532 0.94420 1.00486 0.96793 1.21208 0.93202 1.09179 0.98274 1.17533 0.93558 0.90029 0.89685 1.19530 0.91210 1.16508 1.21667 0.89945 1.25965 1.01317 0.93606 0.93678 1.69771 1.38948 1.08027 1.24511 0.86302 0.81657 0.79087 0.79352 1.18703 1.20245 1.18918 1.21649 0.90150 0.99804 0.99169 1.22563 1.00128 0.98965 0.83944 1.22978 0.81344 1.00405 0.98196 1.87974 1.20741 1.77475 1.43382 0.91302 0.90547 0.91450 0.87830 0.90438 0.88337 0.88493 0.87540 0.88411 0.88268 0.90379 0.84613 0.89812 0.88385 0.87185 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.57 37.16 0.36 -0.50 16 2 C 0.07 0.58 3.39 -26.79 -0.09 0.49 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.08 0.79 5.90 -3.75 -0.02 0.77 16 5 N -0.62 -6.60 3.03 -172.54 -0.52 -7.12 16 6 C 0.52 7.46 7.79 -10.98 -0.09 7.38 16 7 O -0.51 -9.25 15.97 -14.10 -0.23 -9.47 16 8 C 0.05 0.72 4.33 36.01 0.16 0.87 16 9 O -0.33 -6.55 8.99 -47.18 -0.42 -6.97 16 10 C 0.51 11.51 7.90 34.63 0.27 11.79 16 11 O -0.52 -12.09 16.12 -19.24 -0.31 -12.40 16 12 C -0.12 -2.80 5.87 -105.05 -0.62 -3.42 16 13 C -0.19 -4.33 9.62 -38.91 -0.37 -4.70 16 14 C -0.10 -2.30 10.01 -39.73 -0.40 -2.69 16 15 C -0.20 -4.72 9.78 -38.81 -0.38 -5.10 16 16 C 0.09 2.47 5.57 -106.87 -0.60 1.88 16 17 C -0.46 -11.88 9.05 -37.73 -0.34 -12.22 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -20.42 10.96 55.55 0.61 -19.81 16 21 Si 0.91 18.41 29.60 -169.99 -5.03 13.37 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.09 -2.33 8.24 -38.43 -0.32 -2.64 16 26 C 0.07 0.51 6.54 -3.53 -0.02 0.48 16 27 C 0.05 0.33 6.99 37.31 0.26 0.59 16 28 O -0.38 -3.30 10.39 -35.23 -0.37 -3.66 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.07 7.08 -51.93 -0.37 0.71 16 33 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.10 1.28 8.01 -51.93 -0.42 0.87 16 35 H 0.10 1.22 7.65 -51.93 -0.40 0.83 16 36 H 0.11 2.28 7.59 -52.49 -0.40 1.89 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 40 H 0.14 3.79 5.74 -52.49 -0.30 3.48 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.65 6.05 -51.93 -0.31 0.34 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -31.87 371.62 -8.93 -40.80 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.97 Total: 4.97 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.29 Total: -5.31 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.09 Total: -26.92 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.33 Total: -32.51 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.87 -8.93 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919317897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.719 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds