Wall clock time and date at job start Tue Mar 31 2020 18:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.51218 * 2 1 4 4 C 1.52878 * 109.58390 * 239.97897 * 2 1 3 5 5 N 1.47145 * 108.60670 * 187.91970 * 4 2 1 6 6 C 1.34779 * 120.98356 * 230.50089 * 5 4 2 7 7 O 1.21279 * 120.00029 * 359.72384 * 6 5 4 8 8 C 1.50705 * 119.99941 * 179.72075 * 6 5 4 9 9 O 1.45203 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.34705 * 116.99902 * 180.02562 * 9 8 6 11 11 O 1.21462 * 119.99982 * 359.97438 * 10 9 8 12 12 C 1.47773 * 119.99723 * 179.97438 * 10 9 8 13 13 C 1.39966 * 120.02920 * 359.97438 * 12 10 9 14 14 C 1.38315 * 120.34831 * 179.97438 * 13 12 10 15 15 C 1.37760 * 120.42027 * 359.97438 * 14 13 12 16 16 C 1.40757 * 120.05156 * 0.02622 * 15 14 13 17 17 C 1.41440 * 120.17375 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99989 * 24.46053 * 17 16 15 19 19 C 1.39939 * 119.99559 * 204.45931 * 17 16 15 20 20 N 1.30826 * 119.99903 * 17.88002 * 19 17 16 21 21 Si 1.86795 * 119.99927 * 197.87430 * 19 17 16 22 22 H 1.48497 * 109.47085 * 60.00321 * 21 19 17 23 23 H 1.48497 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47265 * 300.00424 * 21 19 17 25 25 C 1.39049 * 120.02590 * 179.97438 * 12 10 9 26 26 C 1.47154 * 118.03469 * 50.23424 * 5 4 2 27 27 C 1.53293 * 108.38493 * 309.71006 * 26 5 4 28 28 O 1.42962 * 109.51018 * 120.09955 * 2 1 3 29 29 H 1.08998 * 109.46822 * 299.89843 * 1 2 3 30 30 H 1.08995 * 109.47180 * 59.90128 * 1 2 3 31 31 H 1.09001 * 109.46720 * 179.90298 * 1 2 3 32 32 H 1.08999 * 109.61517 * 68.10152 * 4 2 1 33 33 H 1.08995 * 109.52299 * 307.69131 * 4 2 1 34 34 H 1.08997 * 109.47137 * 60.00337 * 8 6 5 35 35 H 1.09001 * 109.47098 * 299.99821 * 8 6 5 36 36 H 1.07999 * 119.82854 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.78740 * 180.27595 * 14 13 12 38 38 H 1.08004 * 119.97272 * 180.02562 * 15 14 13 39 39 H 0.96999 * 119.99948 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.20477 * 0.04234 * 25 12 10 41 41 H 1.08994 * 109.68261 * 69.43797 * 26 5 4 42 42 H 1.09005 * 109.67989 * 189.95431 * 26 5 4 43 43 H 1.08994 * 109.51294 * 172.22946 * 27 26 5 44 44 H 1.09007 * 109.51367 * 292.38240 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0425 -0.7206 -1.2471 5 7 3.5012 -0.8767 -1.1331 6 6 4.3194 -0.5043 -2.1373 7 8 3.8556 -0.0373 -3.1559 8 6 5.8107 -0.6683 -1.9944 9 8 6.4671 -0.1977 -3.2010 10 6 7.8115 -0.2760 -3.2360 11 8 8.4187 -0.7246 -2.2846 12 6 8.5474 0.1840 -4.4321 13 6 7.8482 0.7006 -5.5291 14 6 8.5304 1.1334 -6.6517 15 6 9.9051 1.0618 -6.7033 16 6 10.6256 0.5453 -5.6100 17 6 12.0372 0.4711 -5.6600 18 1 12.5900 1.1336 -6.3095 19 6 12.7173 -0.4607 -4.8678 20 7 12.0737 -1.4792 -4.3579 21 14 14.5439 -0.2503 -4.5387 22 1 14.7768 1.0443 -3.8496 23 1 15.0234 -1.3623 -3.6793 24 1 15.2839 -0.2658 -5.8262 25 6 9.9351 0.1039 -4.4687 26 6 4.0407 -1.4457 0.1121 27 6 3.4313 -0.6849 1.2952 28 8 2.0075 -0.6758 1.1658 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 1.8044 -0.1325 -2.1334 33 1 1.5728 -1.7015 -1.3198 34 1 6.0472 -1.7208 -1.8386 35 1 6.1599 -0.0871 -1.1409 36 1 6.7703 0.7615 -5.4988 37 1 7.9820 1.5346 -7.4912 38 1 10.4305 1.4023 -7.5834 39 1 12.5452 -2.1252 -3.8091 40 1 10.4788 -0.2946 -3.6249 41 1 3.7757 -2.5009 0.1785 42 1 5.1253 -1.3381 0.1252 43 1 3.7092 -1.1776 2.2269 44 1 3.8030 0.3398 1.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919317897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:07 Heat of formation + Delta-G solvation = -158.318969 kcal Electronic energy + Delta-G solvation = -27847.032419 eV Core-core repulsion = 23728.732186 eV Total energy + Delta-G solvation = -4118.300232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91368 -41.21911 -39.61111 -39.12226 -37.41030 -36.04149 -35.63376 -34.09365 -32.36857 -31.40485 -30.48473 -29.79738 -27.39540 -26.95545 -24.82285 -24.49982 -22.88767 -22.42959 -21.64320 -20.59071 -19.77314 -18.53622 -18.37146 -17.88210 -17.70425 -17.58784 -17.08031 -16.64172 -16.54352 -16.41034 -16.10268 -15.68649 -15.29632 -15.17406 -14.82546 -14.71270 -14.38362 -14.03645 -13.93865 -13.69728 -13.51075 -13.19224 -13.03835 -13.00017 -12.82931 -12.75534 -12.58502 -12.23785 -12.23064 -12.09466 -11.98431 -11.82514 -11.58278 -11.41556 -11.27581 -11.08602 -11.02375 -9.78388 -9.65155 -9.47261 -8.69427 -6.40501 0.06985 0.94945 1.04405 1.21758 1.38890 1.46730 1.52165 1.74149 1.98928 2.19684 2.68244 2.70369 3.11546 3.57868 3.60512 3.75751 3.85353 3.88539 3.93715 3.95441 4.02598 4.11809 4.30564 4.39211 4.43580 4.60465 4.61973 4.69602 4.77113 4.80234 4.86286 4.96783 5.02486 5.05674 5.09716 5.17143 5.26636 5.28936 5.42042 5.78026 5.87295 5.96432 5.98857 6.09017 6.20068 6.50670 6.68443 6.80157 6.84644 6.86393 8.28203 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002286 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.474059 B =12244.487482 C =13257.560732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.058 0.942 4 C 0.082 3.918 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.557 6.557 8 C 0.042 3.958 9 O -0.339 6.339 10 C 0.520 3.480 11 O -0.534 6.534 12 C -0.128 4.128 13 C -0.186 4.186 14 C -0.099 4.099 15 C -0.203 4.203 16 C 0.066 3.934 17 C -0.492 4.492 18 H 0.088 0.912 19 C 0.031 3.969 20 N -0.824 5.824 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.118 4.118 26 C 0.060 3.940 27 C 0.047 3.953 28 O -0.387 6.387 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.289 0.711 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 -0.318 12.022 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.076 0.924 4 C -0.040 4.040 5 N -0.346 5.346 6 C 0.311 3.689 7 O -0.434 6.434 8 C -0.035 4.035 9 O -0.255 6.255 10 C 0.368 3.632 11 O -0.425 6.425 12 C -0.129 4.129 13 C -0.205 4.205 14 C -0.117 4.117 15 C -0.222 4.222 16 C 0.064 3.936 17 C -0.521 4.521 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.450 5.450 21 Si 0.805 3.195 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.138 4.138 26 C -0.061 4.061 27 C -0.030 4.030 28 O -0.306 6.306 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.154 0.846 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.529 -0.524 12.039 21.271 hybrid contribution 1.062 -0.160 0.071 1.076 sum -16.467 -0.685 12.110 20.452 Atomic orbital electron populations 1.21736 0.90353 1.03855 1.03775 1.22456 0.97017 0.94807 0.83994 0.92410 1.22416 0.78490 1.02881 1.00208 1.48113 1.07173 1.62745 1.16523 1.20152 0.88041 0.77516 0.83173 1.90729 1.77478 1.45261 1.29964 1.22927 0.89628 1.03520 0.87428 1.86632 1.20855 1.76891 1.41119 1.21659 0.79947 0.74235 0.87344 1.90735 1.69430 1.44453 1.37899 1.19022 0.93254 1.07443 0.93202 1.20916 0.98946 1.06294 0.94352 1.20938 0.93989 0.99204 0.97596 1.21497 0.94145 1.08437 0.98144 1.17914 0.94393 0.90858 0.90485 1.19837 0.91629 1.17481 1.23128 0.89354 1.26870 1.06034 0.92727 0.92825 1.69855 1.40947 1.08907 1.25253 0.85200 0.75665 0.79054 0.79546 1.18396 1.19557 1.17792 1.21476 0.91109 1.02219 0.99015 1.22866 1.00869 0.99784 0.82615 1.23144 0.80449 1.00601 0.98850 1.87973 1.21758 1.77481 1.43410 0.90839 0.89600 0.91044 0.89161 0.89237 0.86511 0.86266 0.86012 0.84469 0.86520 0.89983 0.87024 0.88266 0.87317 0.84617 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 71.98 0.69 -0.75 16 2 C 0.08 1.11 3.39 30.56 0.10 1.21 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.08 1.44 5.90 86.22 0.51 1.95 16 5 N -0.61 -12.19 3.03 -818.17 -2.48 -14.67 16 6 C 0.52 14.63 7.79 87.66 0.68 15.32 16 7 O -0.56 -20.37 15.97 15.77 0.25 -20.12 16 8 C 0.04 1.18 4.33 71.24 0.31 1.49 16 9 O -0.34 -13.29 8.99 -49.76 -0.45 -13.73 16 10 C 0.52 23.52 7.90 70.34 0.56 24.07 16 11 O -0.53 -25.29 16.12 19.96 0.32 -24.96 16 12 C -0.13 -6.32 5.87 -20.14 -0.12 -6.44 16 13 C -0.19 -8.32 9.62 22.71 0.22 -8.10 16 14 C -0.10 -4.22 10.01 22.17 0.22 -4.00 16 15 C -0.20 -9.51 9.78 22.77 0.22 -9.29 16 16 C 0.07 3.52 5.57 -21.32 -0.12 3.40 16 17 C -0.49 -25.92 9.05 23.47 0.21 -25.71 16 18 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 19 C 0.03 1.55 5.14 85.25 0.44 1.99 16 20 N -0.82 -44.04 10.96 21.83 0.24 -43.80 16 21 Si 0.99 37.93 29.60 68.60 2.03 39.96 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 25 C -0.12 -6.46 8.24 23.02 0.19 -6.27 16 26 C 0.06 0.78 6.54 86.35 0.57 1.34 16 27 C 0.05 0.53 6.99 72.08 0.50 1.03 16 28 O -0.39 -5.97 10.39 -148.98 -1.55 -7.51 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.86 7.08 -2.39 -0.02 1.85 16 33 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 34 H 0.12 2.88 8.01 -2.39 -0.02 2.86 16 35 H 0.12 2.83 7.65 -2.39 -0.02 2.81 16 36 H 0.12 5.06 7.59 -2.91 -0.02 5.03 16 37 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 40 H 0.11 6.56 5.74 -2.91 -0.02 6.54 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.17 6.05 -2.38 -0.01 1.16 16 43 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -70.70 371.62 4.57 -66.13 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 1.02 Total: 27.45 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.18 Total: -8.75 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -2.24 Total: -58.47 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -1.42 Total: -66.33 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -70.70 4.57 -66.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919317897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.189 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds