Wall clock time and date at job start Tue Mar 31 2020 18:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47299 * 2 1 4 4 O 1.45198 * 109.47565 * 120.00317 * 2 1 3 5 5 C 1.34755 * 116.99887 * 270.00458 * 4 2 1 6 6 O 1.21504 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.47395 * 119.99979 * 179.97438 * 5 4 2 8 8 C 1.39597 * 120.05686 * 359.71597 * 7 5 4 9 9 C 1.37761 * 120.17746 * 180.34977 * 8 7 5 10 10 C 1.38657 * 119.98468 * 359.90267 * 9 8 7 11 11 C 1.37659 * 120.33433 * 359.90322 * 10 9 8 12 12 C 1.38873 * 120.87639 * 0.32028 * 11 10 9 13 13 O 1.35848 * 111.31930 * 179.30184 * 12 11 10 14 14 C 1.43766 * 109.29314 * 18.84721 * 13 12 11 15 15 C 1.51672 * 132.13461 * 180.57299 * 11 10 9 16 16 C 1.50708 * 109.47300 * 240.00264 * 2 1 3 17 17 O 1.21274 * 119.99833 * 256.02696 * 16 2 1 18 18 N 1.34780 * 119.99797 * 76.02468 * 16 2 1 19 19 C 1.46498 * 119.99953 * 5.36456 * 18 16 2 20 20 C 1.46493 * 119.99716 * 185.36941 * 18 16 2 21 21 C 1.50694 * 109.47493 * 90.00180 * 20 18 16 22 22 H 1.08004 * 120.00104 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00591 * 179.97438 * 21 20 18 24 24 N 1.31502 * 120.00530 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99373 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47306 * 90.00023 * 25 23 21 27 27 H 1.48501 * 109.46955 * 209.99913 * 25 23 21 28 28 H 1.48497 * 109.47268 * 330.00001 * 25 23 21 29 29 H 1.08997 * 109.47076 * 66.13405 * 1 2 3 30 30 H 1.09002 * 109.46795 * 186.13458 * 1 2 3 31 31 H 1.09003 * 109.46779 * 306.13586 * 1 2 3 32 32 H 1.07992 * 119.91247 * 0.37868 * 8 7 5 33 33 H 1.08001 * 120.00395 * 179.85310 * 9 8 7 34 34 H 1.08003 * 119.83558 * 179.97438 * 10 9 8 35 35 H 1.08999 * 110.75046 * 90.67371 * 14 13 12 36 36 H 1.09004 * 110.74939 * 213.84637 * 14 13 12 37 37 H 1.09001 * 110.95089 * 46.13412 * 15 11 10 38 38 H 1.09007 * 110.97788 * 282.44384 * 15 11 10 39 39 H 1.09009 * 109.46779 * 84.82696 * 19 18 16 40 40 H 1.08997 * 109.47483 * 204.81677 * 19 18 16 41 41 H 1.08996 * 109.47686 * 324.83175 * 19 18 16 42 42 H 1.09004 * 109.46800 * 209.99800 * 20 18 16 43 43 H 1.09004 * 109.47065 * 329.99814 * 20 18 16 44 44 H 0.97007 * 120.00267 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2179 0.0669 2.2854 6 8 1.9977 1.2614 2.2544 7 6 2.7082 -0.5603 3.5259 8 6 2.9560 -1.9336 3.5644 9 6 3.4073 -2.5236 4.7246 10 6 3.6184 -1.7524 5.8574 11 6 3.3812 -0.3967 5.8297 12 6 2.9216 0.2229 4.6750 13 8 2.7399 1.5553 4.8682 14 6 3.4791 1.9721 6.0287 15 6 3.5283 0.6838 6.8839 16 6 2.0324 -0.7104 -1.2305 17 8 2.4736 -1.8366 -1.1428 18 7 1.9912 -0.0940 -2.4284 19 6 1.5689 1.3059 -2.5178 20 6 2.3687 -0.8241 -3.6411 21 6 1.1506 -1.4916 -4.2254 22 1 0.1911 -1.3832 -3.7415 23 6 1.2608 -2.2407 -5.3777 24 7 0.1978 -2.8236 -5.8872 25 14 2.9202 -2.4275 -6.2149 26 1 3.6185 -3.6193 -5.6695 27 1 2.7208 -2.5966 -7.6767 28 1 3.7405 -1.2153 -5.9641 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 -1.0218 0.1098 31 1 -0.3633 0.6060 0.8300 32 1 2.7939 -2.5350 2.6822 33 1 3.5959 -3.5866 4.7519 34 1 3.9719 -2.2175 6.7658 35 1 4.4841 2.2909 5.7524 36 1 2.9539 2.7689 6.5555 37 1 4.4836 0.5959 7.4014 38 1 2.6997 0.6540 7.5916 39 1 2.4229 1.9559 -2.3267 40 1 1.1774 1.5044 -3.5154 41 1 0.7926 1.4992 -1.7776 42 1 2.7860 -0.1282 -4.3690 43 1 3.1136 -1.5803 -3.3929 44 1 0.2755 -3.3509 -6.6977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923881870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:26 Heat of formation + Delta-G solvation = -108.982124 kcal Electronic energy + Delta-G solvation = -28418.277561 eV Core-core repulsion = 24302.116735 eV Total energy + Delta-G solvation = -4116.160826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60398 -40.39650 -38.94366 -37.66962 -36.27657 -34.97724 -33.24155 -32.71398 -31.67279 -30.59228 -29.62051 -28.37619 -26.16626 -25.17802 -24.13254 -23.40302 -22.29278 -22.04146 -20.61587 -18.81740 -17.95604 -17.74834 -17.11454 -16.96782 -16.64073 -16.36780 -16.03893 -15.84930 -15.32021 -15.01250 -14.68681 -14.20229 -13.90438 -13.70317 -13.56267 -13.46101 -13.13961 -12.91337 -12.78743 -12.39341 -12.27950 -12.20561 -12.18633 -12.11380 -11.87775 -11.61054 -11.48309 -11.39004 -11.24693 -10.94396 -10.66375 -10.52006 -10.42904 -10.16408 -9.56076 -9.33233 -8.99996 -8.60442 -8.54326 -7.77243 -6.10333 -4.09729 0.45042 0.96018 2.42461 2.47434 2.85102 3.17967 3.29177 3.35160 3.37237 3.43558 3.80834 3.95100 4.13734 4.38599 4.44538 4.57311 4.63042 4.78734 4.80777 4.95923 5.02393 5.08690 5.10838 5.14559 5.23326 5.25335 5.31031 5.50152 5.53554 5.71782 5.76160 5.81570 5.86786 5.90626 6.06615 6.09290 6.23411 6.27767 6.43528 6.66500 6.74280 6.91374 7.25805 7.57665 7.78474 8.12677 8.43830 8.82808 8.93071 9.49440 11.02794 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002545 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.518062 B =11001.242486 C =11574.933875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.103 0.897 4 O -0.324 6.324 5 C 0.505 3.495 6 O -0.497 6.497 7 C -0.144 4.144 8 C -0.024 4.024 9 C -0.162 4.162 10 C -0.035 4.035 11 C -0.195 4.195 12 C 0.173 3.827 13 O -0.278 6.278 14 C 0.045 3.955 15 C -0.107 4.107 16 C 0.514 3.486 17 O -0.520 6.520 18 N -0.592 5.592 19 C 0.073 3.927 20 C 0.216 3.784 21 C -0.532 4.532 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.266 1.266 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 8.265 26.229 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.350 3.650 6 O -0.386 6.386 7 C -0.146 4.146 8 C -0.042 4.042 9 C -0.180 4.180 10 C -0.053 4.053 11 C -0.196 4.196 12 C 0.126 3.874 13 O -0.190 6.190 14 C -0.030 4.030 15 C -0.144 4.144 16 C 0.299 3.701 17 O -0.396 6.396 18 N -0.326 5.326 19 C -0.071 4.071 20 C 0.096 3.904 21 C -0.570 4.570 22 H 0.094 0.906 23 C -0.129 4.129 24 N -0.534 5.534 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.727 8.093 25.923 27.978 hybrid contribution 0.690 -0.009 -0.497 0.850 sum 7.417 8.084 25.426 27.692 Atomic orbital electron populations 1.22169 0.91866 1.04325 1.03879 1.22615 0.96195 0.97288 0.82341 0.87892 1.86656 1.76901 1.40978 1.19417 1.20982 0.74892 0.85219 0.83919 1.90854 1.48023 1.15553 1.84173 1.18385 1.12917 0.93828 0.89472 1.21457 0.91593 0.91963 0.99204 1.21076 1.03623 1.00716 0.92549 1.20569 0.94792 0.91294 0.98667 1.20735 1.08645 0.95523 0.94689 1.19436 0.91683 0.84083 0.92245 1.86999 1.65214 1.19752 1.47042 1.23967 0.97394 0.97391 0.84238 1.21801 1.04208 0.91297 0.97068 1.19777 0.79865 0.86718 0.83773 1.90679 1.45162 1.18343 1.85404 1.47731 1.65684 1.12039 1.07098 1.21866 0.99173 0.82112 1.03905 1.19737 0.97291 0.92397 0.81009 1.21320 0.95057 1.31136 1.09506 0.90634 1.24846 0.96573 0.94773 0.96746 1.69889 1.28833 1.33002 1.21697 0.86850 0.84611 0.79420 0.78822 1.19838 1.21040 1.19029 0.89376 0.90503 0.91167 0.82896 0.84304 0.85086 0.90139 0.87172 0.88739 0.88893 0.93294 0.89886 0.91861 0.94862 0.94278 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.19 37.16 0.34 -2.19 16 2 C 0.07 1.30 2.14 -27.88 -0.06 1.24 16 3 H 0.10 1.66 6.31 -51.93 -0.33 1.33 16 4 O -0.32 -5.71 8.70 -47.17 -0.41 -6.12 16 5 C 0.51 8.31 7.86 34.46 0.27 8.58 16 6 O -0.50 -8.94 15.12 -24.89 -0.38 -9.32 16 7 C -0.14 -1.99 5.89 -104.74 -0.62 -2.61 16 8 C -0.02 -0.28 9.59 -39.25 -0.38 -0.65 16 9 C -0.16 -1.41 10.05 -39.60 -0.40 -1.80 16 10 C -0.04 -0.27 10.02 -39.64 -0.40 -0.67 16 11 C -0.20 -1.79 6.27 -104.12 -0.65 -2.45 16 12 C 0.17 2.16 6.73 -38.42 -0.26 1.90 16 13 O -0.28 -3.51 10.12 -34.87 -0.35 -3.86 16 14 C 0.05 0.32 8.01 38.06 0.30 0.63 16 15 C -0.11 -0.64 7.12 -26.50 -0.19 -0.83 16 16 C 0.51 11.06 6.95 -10.98 -0.08 10.98 16 17 O -0.52 -13.25 16.13 -13.54 -0.22 -13.47 16 18 N -0.59 -12.48 2.86 -182.96 -0.52 -13.00 16 19 C 0.07 1.15 9.79 59.85 0.59 1.74 16 20 C 0.22 5.31 4.25 -5.20 -0.02 5.28 16 21 C -0.53 -15.18 9.94 -34.44 -0.34 -15.53 16 22 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 23 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 25 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 29 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.15 1.79 7.59 -52.49 -0.40 1.39 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.06 0.86 4.92 -51.93 -0.26 0.61 16 42 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 43 H 0.04 1.03 6.78 -51.93 -0.35 0.67 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -37.12 370.95 -8.01 -45.13 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.84 Total: -0.76 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.98 Total: 5.66 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.25 Total: -39.70 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.36 Total: -32.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.12 -8.01 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923881870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.848 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds