Wall clock time and date at job start Tue Mar 31 2020 18:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 5 5 C 1.34754 * 116.99763 * 90.00236 * 4 2 1 6 6 O 1.21513 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.47402 * 119.99824 * 180.27224 * 5 4 2 8 8 C 1.39591 * 120.05756 * 359.44581 * 7 5 4 9 9 C 1.37766 * 120.17690 * 179.79471 * 8 7 5 10 10 C 1.38662 * 119.98230 * 0.44776 * 9 8 7 11 11 C 1.37657 * 120.33167 * 359.63266 * 10 9 8 12 12 C 1.38878 * 120.88294 * 0.32108 * 11 10 9 13 13 O 1.35835 * 111.32121 * 179.30124 * 12 11 10 14 14 C 1.43775 * 109.29505 * 18.84335 * 13 12 11 15 15 C 1.51679 * 132.13014 * 180.56570 * 11 10 9 16 16 C 1.50699 * 109.47384 * 120.00191 * 2 1 3 17 17 O 1.21279 * 119.99556 * 119.99752 * 16 2 1 18 18 N 1.34773 * 120.00018 * 300.00114 * 16 2 1 19 19 C 1.46500 * 120.00259 * 359.97438 * 18 16 2 20 20 C 1.46499 * 119.99994 * 179.97438 * 18 16 2 21 21 C 1.50700 * 109.46860 * 90.00293 * 20 18 16 22 22 H 1.08004 * 120.00164 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00039 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47101 * 89.99651 * 25 23 21 27 27 H 1.48498 * 109.47079 * 210.00074 * 25 23 21 28 28 H 1.48501 * 109.47159 * 329.99662 * 25 23 21 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 31 31 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 32 32 H 1.07999 * 119.91067 * 0.08017 * 8 7 5 33 33 H 1.08000 * 120.00688 * 180.15004 * 9 8 7 34 34 H 1.08000 * 119.83034 * 179.65151 * 10 9 8 35 35 H 1.08998 * 110.74818 * 90.67157 * 14 13 12 36 36 H 1.09000 * 110.75198 * 213.84222 * 14 13 12 37 37 H 1.09001 * 110.94664 * 46.13784 * 15 11 10 38 38 H 1.09000 * 110.97899 * 282.44551 * 15 11 10 39 39 H 1.09004 * 109.47162 * 89.99502 * 19 18 16 40 40 H 1.08996 * 109.47447 * 209.99926 * 19 18 16 41 41 H 1.08999 * 109.46869 * 330.00123 * 19 18 16 42 42 H 1.08995 * 109.47557 * 209.99728 * 20 18 16 43 43 H 1.08995 * 109.47419 * 330.00473 * 20 18 16 44 44 H 0.96994 * 120.00434 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2178 0.0670 -2.2854 6 8 1.9968 1.2615 -2.2546 7 6 2.7026 -0.5610 -3.5277 8 6 2.9620 -1.9322 -3.5628 9 6 3.4111 -2.5225 -4.7238 10 6 3.6155 -1.7523 -5.8586 11 6 3.3646 -0.3990 -5.8348 12 6 2.9103 0.2215 -4.6784 13 8 2.7422 1.5561 -4.8674 14 6 2.6581 1.8294 -6.2764 15 6 3.4808 0.6762 -6.8983 16 6 2.0324 -0.7104 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7068 -0.2500 2.4545 19 6 0.8650 0.9414 2.5891 20 6 2.1948 -0.9410 3.6506 21 6 3.5224 -0.3580 4.0610 22 1 3.9593 0.4465 3.4879 23 6 4.1800 -0.8522 5.1675 24 7 3.6484 -1.8322 5.8652 25 14 5.8261 -0.1300 5.6758 26 1 5.6029 0.9949 6.6192 27 1 6.6427 -1.1779 6.3392 28 1 6.5411 0.3672 4.4730 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.8057 -2.5327 -2.6789 33 1 3.6086 -3.5840 -4.7486 34 1 3.9731 -2.2167 -6.7657 35 1 1.6230 1.7922 -6.6159 36 1 3.1050 2.7959 -6.5097 37 1 3.0385 0.3445 -7.8377 38 1 4.5199 0.9722 -7.0421 39 1 -0.1831 0.6438 2.6222 40 1 1.1228 1.4665 3.5087 41 1 1.0288 1.6002 1.7363 42 1 1.4768 -0.8155 4.4611 43 1 2.3156 -2.0022 3.4334 44 1 4.1107 -2.1797 6.6438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923881873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:29 Heat of formation + Delta-G solvation = -109.563098 kcal Electronic energy + Delta-G solvation = -28427.655869 eV Core-core repulsion = 24311.469850 eV Total energy + Delta-G solvation = -4116.186019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56789 -40.34941 -38.86038 -37.63048 -36.20720 -34.91835 -33.22066 -32.83265 -31.55123 -30.54951 -29.58658 -27.64815 -26.23075 -25.08188 -24.11573 -23.43625 -22.28845 -22.22430 -20.62502 -18.84981 -17.92738 -17.71504 -17.08246 -16.56775 -16.49489 -16.32889 -15.90350 -15.81836 -15.30555 -15.01930 -14.56068 -14.28327 -13.85168 -13.58676 -13.55232 -13.44962 -13.17952 -12.99464 -12.69072 -12.38962 -12.21227 -12.16155 -12.08163 -12.04766 -11.59137 -11.57879 -11.33107 -11.21342 -11.11896 -10.90113 -10.63512 -10.53602 -10.39164 -10.15560 -9.63549 -9.29445 -8.87388 -8.50729 -8.43722 -7.70632 -6.04728 -4.09493 0.49088 0.99588 2.46874 2.53711 2.88664 3.29111 3.31507 3.37941 3.43889 3.47595 3.90433 3.98310 4.17233 4.44547 4.48045 4.60285 4.66232 4.82031 4.86853 4.98941 5.03452 5.11744 5.12094 5.16984 5.28544 5.29987 5.33866 5.50070 5.59460 5.69084 5.72620 5.85205 5.89627 5.93198 6.04287 6.10467 6.25306 6.26912 6.48837 6.77939 7.00406 7.40504 7.48561 7.83519 7.91864 8.21585 8.31469 8.86576 9.01567 9.55585 11.03419 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002650 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.124417 B =10563.044324 C =10954.767042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.106 0.894 4 O -0.323 6.323 5 C 0.506 3.494 6 O -0.498 6.498 7 C -0.143 4.143 8 C -0.024 4.024 9 C -0.162 4.162 10 C -0.035 4.035 11 C -0.195 4.195 12 C 0.173 3.827 13 O -0.278 6.278 14 C 0.045 3.955 15 C -0.107 4.107 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 3.930 -25.970 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.238 6.238 5 C 0.350 3.650 6 O -0.386 6.386 7 C -0.145 4.145 8 C -0.042 4.042 9 C -0.180 4.180 10 C -0.054 4.054 11 C -0.196 4.196 12 C 0.125 3.875 13 O -0.190 6.190 14 C -0.030 4.030 15 C -0.144 4.144 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.447 3.838 -25.639 26.491 hybrid contribution 0.933 0.585 0.284 1.137 sum -4.514 4.423 -25.355 26.131 Atomic orbital electron populations 1.22399 0.92479 1.04050 1.04278 1.22599 0.95635 0.97724 0.82710 0.87627 1.86634 1.76947 1.40916 1.19336 1.20973 0.74887 0.85218 0.83893 1.90856 1.48033 1.15549 1.84208 1.18390 1.12401 0.93411 0.90322 1.21445 0.91628 0.91992 0.99099 1.21071 1.03784 1.00767 0.92366 1.20563 0.94811 0.91306 0.98675 1.20733 1.07648 0.95498 0.95716 1.19437 0.91226 0.83605 0.93187 1.87006 1.86833 1.19126 1.26009 1.23962 1.01008 0.99758 0.78252 1.21800 1.02158 0.92531 0.97885 1.19763 0.81646 0.85371 0.83811 1.90694 1.36931 1.26048 1.85891 1.48051 1.49890 1.28354 1.06657 1.21888 0.93943 0.88051 1.02941 1.19347 0.94357 0.93749 0.79731 1.21438 1.04828 1.19161 1.11286 0.92411 1.24929 0.97981 0.94907 0.96230 1.69926 1.39096 1.25995 1.18334 0.86486 0.83596 0.78681 0.78625 1.20607 1.21042 1.19856 0.91014 0.88887 0.91371 0.82932 0.84323 0.85101 0.90173 0.87192 0.88758 0.88883 0.93009 0.90330 0.92246 0.94594 0.93626 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.19 37.16 0.34 -2.07 16 2 C 0.07 1.27 2.18 -27.88 -0.06 1.21 16 3 H 0.11 1.84 6.42 -51.93 -0.33 1.51 16 4 O -0.32 -5.84 8.64 -47.32 -0.41 -6.25 16 5 C 0.51 8.67 7.86 34.46 0.27 8.94 16 6 O -0.50 -9.34 15.12 -24.90 -0.38 -9.72 16 7 C -0.14 -2.06 5.89 -104.73 -0.62 -2.68 16 8 C -0.02 -0.28 9.59 -39.25 -0.38 -0.66 16 9 C -0.16 -1.47 10.05 -39.60 -0.40 -1.87 16 10 C -0.04 -0.29 10.02 -39.64 -0.40 -0.69 16 11 C -0.20 -1.88 6.27 -104.11 -0.65 -2.54 16 12 C 0.17 2.26 6.73 -38.42 -0.26 2.00 16 13 O -0.28 -3.67 10.12 -34.83 -0.35 -4.02 16 14 C 0.05 0.34 8.01 38.05 0.30 0.65 16 15 C -0.11 -0.69 7.12 -26.50 -0.19 -0.87 16 16 C 0.51 11.24 7.15 -10.99 -0.08 11.16 16 17 O -0.52 -13.72 16.08 -14.10 -0.23 -13.95 16 18 N -0.60 -12.89 2.86 -182.96 -0.52 -13.42 16 19 C 0.08 1.21 8.80 59.85 0.53 1.73 16 20 C 0.25 6.50 5.16 -5.19 -0.03 6.47 16 21 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 22 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 25 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.12 4.53 -51.93 -0.24 0.89 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.15 1.84 7.59 -52.49 -0.40 1.44 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 40 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -37.05 372.00 -8.39 -45.44 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.79 Total: -1.83 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.03 Total: 6.96 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.21 Total: -39.37 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.37 Total: -33.94 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.05 -8.39 -45.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923881873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.121 kcal (2) G-P(sol) polarization free energy of solvation -37.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds