Wall clock time and date at job start Tue Mar 31 2020 18:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 5 5 C 1.34754 * 116.99763 * 90.00236 * 4 2 1 6 6 O 1.21513 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.47402 * 119.99824 * 180.27224 * 5 4 2 8 8 C 1.39591 * 120.05756 * 359.44581 * 7 5 4 9 9 C 1.37766 * 120.17690 * 179.79471 * 8 7 5 10 10 C 1.38662 * 119.98230 * 0.44776 * 9 8 7 11 11 C 1.37657 * 120.33167 * 359.63266 * 10 9 8 12 12 C 1.38878 * 120.88294 * 0.32108 * 11 10 9 13 13 O 1.35835 * 111.32121 * 179.30124 * 12 11 10 14 14 C 1.43775 * 109.29505 * 18.84335 * 13 12 11 15 15 C 1.51679 * 132.13014 * 180.56570 * 11 10 9 16 16 C 1.50699 * 109.47384 * 120.00191 * 2 1 3 17 17 O 1.21279 * 119.99556 * 119.99752 * 16 2 1 18 18 N 1.34773 * 120.00018 * 300.00114 * 16 2 1 19 19 C 1.46500 * 120.00259 * 359.97438 * 18 16 2 20 20 C 1.46499 * 119.99994 * 179.97438 * 18 16 2 21 21 C 1.50700 * 109.46860 * 90.00293 * 20 18 16 22 22 H 1.08004 * 120.00164 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00039 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47101 * 89.99651 * 25 23 21 27 27 H 1.48498 * 109.47079 * 210.00074 * 25 23 21 28 28 H 1.48501 * 109.47159 * 329.99662 * 25 23 21 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 31 31 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 32 32 H 1.07999 * 119.91067 * 0.08017 * 8 7 5 33 33 H 1.08000 * 120.00688 * 180.15004 * 9 8 7 34 34 H 1.08000 * 119.83034 * 179.65151 * 10 9 8 35 35 H 1.08998 * 110.74818 * 90.67157 * 14 13 12 36 36 H 1.09000 * 110.75198 * 213.84222 * 14 13 12 37 37 H 1.09001 * 110.94664 * 46.13784 * 15 11 10 38 38 H 1.09000 * 110.97899 * 282.44551 * 15 11 10 39 39 H 1.09004 * 109.47162 * 89.99502 * 19 18 16 40 40 H 1.08996 * 109.47447 * 209.99926 * 19 18 16 41 41 H 1.08999 * 109.46869 * 330.00123 * 19 18 16 42 42 H 1.08995 * 109.47557 * 209.99728 * 20 18 16 43 43 H 1.08995 * 109.47419 * 330.00473 * 20 18 16 44 44 H 0.96994 * 120.00434 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2178 0.0670 -2.2854 6 8 1.9968 1.2615 -2.2546 7 6 2.7026 -0.5610 -3.5277 8 6 2.9620 -1.9322 -3.5628 9 6 3.4111 -2.5225 -4.7238 10 6 3.6155 -1.7523 -5.8586 11 6 3.3646 -0.3990 -5.8348 12 6 2.9103 0.2215 -4.6784 13 8 2.7422 1.5561 -4.8674 14 6 2.6581 1.8294 -6.2764 15 6 3.4808 0.6762 -6.8983 16 6 2.0324 -0.7104 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7068 -0.2500 2.4545 19 6 0.8650 0.9414 2.5891 20 6 2.1948 -0.9410 3.6506 21 6 3.5224 -0.3580 4.0610 22 1 3.9593 0.4465 3.4879 23 6 4.1800 -0.8522 5.1675 24 7 3.6484 -1.8322 5.8652 25 14 5.8261 -0.1300 5.6758 26 1 5.6029 0.9949 6.6192 27 1 6.6427 -1.1779 6.3392 28 1 6.5411 0.3672 4.4730 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.8057 -2.5327 -2.6789 33 1 3.6086 -3.5840 -4.7486 34 1 3.9731 -2.2167 -6.7657 35 1 1.6230 1.7922 -6.6159 36 1 3.1050 2.7959 -6.5097 37 1 3.0385 0.3445 -7.8377 38 1 4.5199 0.9722 -7.0421 39 1 -0.1831 0.6438 2.6222 40 1 1.1228 1.4665 3.5087 41 1 1.0288 1.6002 1.7363 42 1 1.4768 -0.8155 4.4611 43 1 2.3156 -2.0022 3.4334 44 1 4.1107 -2.1797 6.6438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923881873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:28 Heat of formation + Delta-G solvation = -132.572308 kcal Electronic energy + Delta-G solvation = -28428.653624 eV Core-core repulsion = 24311.469850 eV Total energy + Delta-G solvation = -4117.183773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42854 -41.68038 -40.48026 -38.45811 -37.60889 -36.75497 -34.95483 -33.96021 -32.98079 -31.41782 -30.29182 -29.56801 -27.77916 -26.29025 -25.59900 -24.43100 -23.65762 -23.03767 -21.79457 -20.49495 -19.14283 -18.69679 -18.59208 -18.20139 -17.59702 -17.43727 -17.28773 -17.09435 -16.74457 -16.43103 -15.96327 -15.77055 -14.98442 -14.88178 -14.58466 -14.34040 -14.26871 -14.18575 -13.98069 -13.77764 -13.57539 -13.52478 -13.34283 -13.05424 -12.91424 -12.83311 -12.73808 -12.61464 -12.45833 -12.31379 -12.22978 -11.96553 -11.86179 -11.74591 -11.61404 -10.66498 -10.65908 -10.11181 -9.54917 -9.29064 -8.25736 -6.40262 -0.43149 0.20696 1.18701 1.34652 1.37682 1.38312 1.47761 1.58217 2.16269 2.28695 2.41066 2.60436 3.04075 3.35660 3.36898 3.46060 3.59757 3.73594 3.80720 3.89255 4.12668 4.15888 4.25717 4.26434 4.33879 4.50074 4.56203 4.57787 4.64852 4.77384 4.83065 4.86465 4.92203 4.94530 5.05424 5.07533 5.13578 5.18986 5.26438 5.34292 5.48730 5.55355 5.75737 6.01427 6.01899 6.48101 6.60446 6.67881 7.16693 7.33112 8.81669 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002650 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.124417 B =10563.044324 C =10954.767042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.109 0.891 4 O -0.337 6.337 5 C 0.503 3.497 6 O -0.524 6.524 7 C -0.179 4.179 8 C -0.040 4.040 9 C -0.154 4.154 10 C -0.021 4.021 11 C -0.192 4.192 12 C 0.150 3.850 13 O -0.315 6.315 14 C 0.034 3.966 15 C -0.097 4.097 16 C 0.502 3.498 17 O -0.577 6.577 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.548 4.548 22 H 0.049 0.951 23 C 0.011 3.989 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.277 1.277 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.002 0.998 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 4.814 -28.650 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.127 0.873 4 O -0.254 6.254 5 C 0.349 3.651 6 O -0.415 6.415 7 C -0.181 4.181 8 C -0.058 4.058 9 C -0.172 4.172 10 C -0.039 4.039 11 C -0.193 4.193 12 C 0.103 3.897 13 O -0.228 6.228 14 C -0.040 4.040 15 C -0.134 4.134 16 C 0.289 3.711 17 O -0.457 6.457 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.140 3.860 21 C -0.587 4.587 22 H 0.068 0.932 23 C -0.188 4.188 24 N -0.564 5.564 25 Si 0.791 3.209 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.202 1.202 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.222 4.760 -28.328 29.196 hybrid contribution 0.842 0.293 1.025 1.359 sum -4.380 5.053 -27.303 28.110 Atomic orbital electron populations 1.22398 0.89126 1.04641 1.06013 1.22531 0.97970 0.96577 0.80867 0.87311 1.86644 1.77354 1.41600 1.19755 1.21590 0.74201 0.85073 0.84192 1.90811 1.49616 1.16425 1.84602 1.18526 1.15155 0.94693 0.89742 1.21450 0.93057 0.91177 1.00162 1.21445 1.02020 1.02269 0.91419 1.21061 0.92569 0.90642 0.99639 1.21234 1.06127 0.96630 0.95338 1.19732 0.92117 0.84008 0.93842 1.86950 1.86989 1.19471 1.29372 1.24344 1.02376 1.01398 0.75880 1.21901 1.03006 0.90578 0.97892 1.20551 0.80682 0.84830 0.85074 1.90651 1.39482 1.28669 1.86850 1.48032 1.50144 1.29532 1.05350 1.22250 0.94839 0.86287 1.04072 1.18864 0.93972 0.91826 0.81383 1.21682 1.06046 1.19301 1.11647 0.93228 1.25818 1.01726 0.95174 0.96131 1.70030 1.40697 1.26936 1.18762 0.85432 0.78750 0.78466 0.78263 1.18596 1.20306 1.20228 0.91031 0.86703 0.89927 0.84293 0.81435 0.80790 0.89096 0.85224 0.85541 0.87546 0.89387 0.90501 0.89663 0.94629 0.97945 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.19 71.98 0.66 -3.76 16 2 C 0.08 2.86 2.18 29.85 0.07 2.93 16 3 H 0.11 3.86 6.42 -2.39 -0.02 3.85 16 4 O -0.34 -12.92 8.64 -50.26 -0.43 -13.36 16 5 C 0.50 18.17 7.86 70.24 0.55 18.72 16 6 O -0.52 -20.49 15.12 25.17 0.38 -20.11 16 7 C -0.18 -5.38 5.89 -19.94 -0.12 -5.50 16 8 C -0.04 -0.99 9.59 22.48 0.22 -0.78 16 9 C -0.15 -2.50 10.05 22.26 0.22 -2.28 16 10 C -0.02 -0.28 10.02 22.23 0.22 -0.06 16 11 C -0.19 -3.25 6.27 -19.54 -0.12 -3.38 16 12 C 0.15 3.92 6.73 23.02 0.15 4.07 16 13 O -0.31 -8.33 10.12 -76.77 -0.78 -9.11 16 14 C 0.03 0.45 8.01 72.56 0.58 1.03 16 15 C -0.10 -0.91 7.12 30.74 0.22 -0.69 16 16 C 0.50 23.07 7.15 87.66 0.63 23.70 16 17 O -0.58 -32.42 16.08 15.77 0.25 -32.16 16 18 N -0.60 -26.52 2.86 -851.16 -2.43 -28.96 16 19 C 0.07 2.06 8.80 127.77 1.12 3.19 16 20 C 0.26 14.29 5.16 85.63 0.44 14.73 16 21 C -0.55 -32.42 9.39 25.60 0.24 -32.18 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.01 0.64 5.46 84.66 0.46 1.10 16 24 N -0.92 -56.27 13.29 21.45 0.28 -55.98 16 25 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 2.52 4.53 -2.39 -0.01 2.51 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.14 3.67 7.59 -2.91 -0.02 3.65 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 2.10 6.95 -2.38 -0.02 2.09 16 40 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 41 H 0.08 2.20 6.01 -2.39 -0.01 2.18 16 42 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 43 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -86.64 372.00 5.88 -80.76 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.03 Total: 10.18 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.55 Total: 20.86 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.15 Total: -84.94 kcal Atomic # 8 Polarization: -74.16 SS G_CDS: -0.58 Total: -74.74 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -86.64 5.88 -80.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923881873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.816 kcal (2) G-P(sol) polarization free energy of solvation -86.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds