Wall clock time and date at job start Tue Mar 31 2020 17:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.32536 * 2 1 4 4 C 1.54736 * 110.45322 * 237.70893 * 2 1 3 5 5 C 1.53473 * 103.69157 * 217.31178 * 4 2 1 6 6 C 1.54444 * 110.78536 * 240.57157 * 5 4 2 7 7 C 1.55497 * 100.54822 * 203.06762 * 6 5 4 8 8 C 1.54475 * 102.53814 * 33.04685 * 7 6 5 9 9 H 1.08996 * 109.83841 * 98.15617 * 8 7 6 10 10 C 1.53005 * 109.83669 * 219.05104 * 8 7 6 11 11 N 1.46486 * 109.47551 * 185.00151 * 10 8 7 12 12 S 1.65601 * 120.00516 * 165.00099 * 11 10 8 13 13 O 1.42096 * 104.28069 * 181.07143 * 12 11 10 14 14 O 1.42099 * 104.27326 * 308.93038 * 12 11 10 15 15 C 1.81397 * 104.44799 * 64.99800 * 12 11 10 16 16 C 1.53008 * 109.47031 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.46967 * 180.02562 * 16 15 12 18 18 H 1.07999 * 120.00270 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00113 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99944 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00393 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47117 * 90.00290 * 21 19 17 23 23 H 1.48503 * 109.47497 * 210.00298 * 21 19 17 24 24 H 1.48502 * 109.47161 * 330.00000 * 21 19 17 25 25 O 1.42419 * 111.81098 * 121.81115 * 5 4 2 26 26 C 1.53443 * 105.11771 * 0.29931 * 5 4 2 27 27 O 1.44522 * 110.36524 * 122.23627 * 2 1 3 28 28 H 1.09001 * 109.46484 * 299.22283 * 1 2 3 29 29 H 1.08996 * 109.47269 * 59.21694 * 1 2 3 30 30 H 1.09000 * 109.47214 * 179.22166 * 1 2 3 31 31 H 1.08997 * 110.58601 * 98.75885 * 4 2 1 32 32 H 1.08998 * 110.58326 * 335.86016 * 4 2 1 33 33 H 1.09002 * 111.35456 * 85.22848 * 6 5 4 34 34 H 1.09007 * 111.17835 * 320.82919 * 6 5 4 35 35 H 1.09002 * 110.82790 * 274.72886 * 7 6 5 36 36 H 1.09000 * 110.82516 * 151.36066 * 7 6 5 37 37 H 1.09001 * 109.47154 * 305.00343 * 10 8 7 38 38 H 1.08999 * 109.46872 * 64.99477 * 10 8 7 39 39 H 0.97006 * 119.99725 * 345.00200 * 11 10 8 40 40 H 1.09005 * 109.47502 * 300.00285 * 15 12 11 41 41 H 1.08997 * 109.47540 * 60.00353 * 15 12 11 42 42 H 1.08997 * 109.46740 * 299.99345 * 16 15 12 43 43 H 1.08999 * 109.47356 * 60.00035 * 16 15 12 44 44 H 0.96997 * 120.00368 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.41290 * 142.01764 * 26 5 4 46 46 H 1.09004 * 110.41249 * 264.46286 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0707 -0.7745 -1.2256 5 6 3.3089 -1.4990 -0.6801 6 6 4.5810 -1.0538 -1.4343 7 6 5.5073 -2.2757 -1.1760 8 6 4.5074 -3.4526 -1.1385 9 1 4.4894 -3.9537 -2.1063 10 6 4.9146 -4.4452 -0.0476 11 7 4.0332 -5.6142 -0.0974 12 16 4.4533 -7.0027 0.7013 13 8 3.3963 -7.9071 0.4118 14 8 5.7816 -7.2663 0.2708 15 6 4.4327 -6.5398 2.4551 16 6 4.8097 -7.7534 3.3073 17 6 4.7919 -7.3690 4.7644 18 1 4.5377 -6.3600 5.0536 19 6 5.1003 -8.3054 5.7282 20 7 5.4104 -9.5340 5.3760 21 14 5.0790 -7.8289 7.5342 22 1 3.7234 -8.0651 8.0925 23 1 6.0695 -8.6508 8.2749 24 1 5.4272 -6.3918 7.6711 25 8 3.2113 -2.9103 -0.8444 26 6 3.3857 -1.1012 0.7999 27 8 2.0330 -0.7227 1.1460 28 1 -0.3632 0.5017 0.8969 29 1 -0.3633 0.5259 -0.8828 30 1 -0.3634 -1.0276 -0.0140 31 1 2.3502 -0.0848 -2.0220 32 1 1.3322 -1.4929 -1.5812 33 1 5.0000 -0.1444 -1.0034 34 1 4.3838 -0.9277 -2.4989 35 1 6.0240 -2.1755 -0.2215 36 1 6.2213 -2.3997 -1.9902 37 1 5.9454 -4.7603 -0.2095 38 1 4.8297 -3.9675 0.9284 39 1 3.2034 -5.5750 -0.5984 40 1 5.1506 -5.7379 2.6278 41 1 3.4344 -6.1990 2.7293 42 1 4.0920 -8.5555 3.1348 43 1 5.8081 -8.0939 3.0332 44 1 5.6277 -10.1928 6.0540 45 1 3.7102 -1.9479 1.4047 46 1 4.0624 -0.2569 0.9320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119432954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:35 Heat of formation + Delta-G solvation = -177.273969 kcal Electronic energy + Delta-G solvation = -27561.504263 eV Core-core repulsion = 23577.826032 eV Total energy + Delta-G solvation = -3983.678232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07065 -38.45950 -36.55380 -35.43817 -35.05118 -33.86127 -32.80205 -32.47809 -31.17102 -31.12603 -27.48109 -26.37407 -25.56890 -23.66208 -22.09206 -21.71537 -21.49978 -20.52891 -18.83479 -17.45754 -17.03505 -16.83932 -16.57431 -16.21102 -16.06026 -15.76601 -15.38288 -14.87505 -14.58621 -14.51364 -14.20804 -13.85476 -13.39661 -13.30587 -13.10435 -12.85756 -12.67723 -12.49620 -12.34856 -12.31655 -12.17291 -11.83521 -11.72019 -11.63639 -11.55672 -11.47030 -11.06634 -11.05911 -10.97910 -10.93167 -10.90028 -10.39741 -10.35762 -10.30622 -9.77357 -9.62611 -9.45553 -8.98305 -8.47898 -6.10075 -4.15437 0.84289 3.08602 3.28212 3.34216 3.35776 3.37260 3.53935 3.94585 4.22216 4.23605 4.28987 4.38869 4.41529 4.43193 4.62137 4.71056 4.78953 4.89052 4.95417 5.03698 5.08219 5.13329 5.25015 5.25146 5.28846 5.33166 5.36544 5.39688 5.50713 5.55428 5.60479 5.68643 5.72005 5.73119 5.81847 5.85022 5.98954 6.48585 6.52759 6.80398 7.17888 7.33126 7.39548 7.83219 8.20446 8.88073 9.49220 11.01018 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.003066 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.016356 B = 9130.862857 C =10411.771822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.145 4.145 5 C 0.075 3.925 6 C -0.141 4.141 7 C -0.152 4.152 8 C 0.071 3.929 9 H 0.093 0.907 10 C 0.107 3.893 11 N -1.123 6.123 12 S 2.594 3.406 13 O -0.967 6.967 14 O -0.969 6.969 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 O -0.347 6.347 26 C 0.034 3.966 27 O -0.365 6.365 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.416 0.584 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.101 0.899 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 22.758 -16.245 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.183 4.183 5 C 0.035 3.965 6 C -0.179 4.179 7 C -0.191 4.191 8 C 0.013 3.987 9 H 0.111 0.889 10 C -0.020 4.020 11 N -0.880 5.880 12 S 2.691 3.309 13 O -0.958 6.958 14 O -0.959 6.959 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 O -0.266 6.266 26 C -0.043 4.043 27 O -0.284 6.284 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.250 0.750 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.351 21.576 -16.314 27.256 hybrid contribution -0.099 0.831 1.122 1.399 sum -3.451 22.407 -15.192 27.291 Atomic orbital electron populations 1.21807 0.92976 1.03291 1.02404 1.23034 0.95686 0.95112 0.84998 0.91383 1.23038 0.97349 0.99472 0.98441 1.22979 0.95603 0.82819 0.95111 1.23298 0.94288 0.98850 1.01415 1.23214 0.98304 0.93427 1.04111 1.23100 0.83100 0.94083 0.98454 0.88945 1.21691 0.94556 0.86495 0.99253 1.55673 1.33657 1.29977 1.68726 1.05498 0.74081 0.73060 0.78235 1.93552 1.56829 1.61090 1.84279 1.93530 1.38776 1.83181 1.80438 1.30443 1.10182 1.11356 1.20325 1.18963 0.97895 0.89185 0.95070 1.21013 1.47833 0.97110 0.89952 0.92043 1.25068 0.94959 0.94921 0.99556 1.69956 1.45993 1.02958 1.34007 0.86469 0.77956 0.78507 0.84348 1.20454 1.21032 1.19763 1.88434 1.28339 1.18702 1.91160 1.23816 0.85132 1.00500 0.94848 1.89256 1.27236 1.74326 1.37557 0.91738 0.91190 0.91459 0.89605 0.89010 0.89357 0.89791 0.89608 0.89218 0.89142 0.91390 0.75030 0.86464 0.86014 0.94828 0.94834 0.92552 0.88104 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.53 37.16 0.35 -0.72 16 2 C 0.07 0.57 3.94 -25.82 -0.10 0.47 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.15 -1.08 6.10 -25.57 -0.16 -1.23 16 5 C 0.08 0.63 1.16 -89.39 -0.10 0.52 16 6 C -0.14 -0.81 5.94 -24.65 -0.15 -0.95 16 7 C -0.15 -0.96 6.44 -24.63 -0.16 -1.12 16 8 C 0.07 0.65 3.62 -25.95 -0.09 0.55 16 9 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.11 1.19 5.67 -4.05 -0.02 1.17 16 11 N -1.12 -15.23 5.87 -10.62 -0.06 -15.29 16 12 S 2.59 47.27 5.46 -107.50 -0.59 46.69 16 13 O -0.97 -20.71 18.08 -57.54 -1.04 -21.75 16 14 O -0.97 -20.09 17.50 -57.54 -1.01 -21.09 16 15 C -0.59 -11.53 6.01 37.16 0.22 -11.30 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 O -0.35 -3.67 10.30 -35.23 -0.36 -4.04 16 26 C 0.03 0.32 6.88 37.39 0.26 0.58 16 27 O -0.36 -4.22 11.35 -35.23 -0.40 -4.62 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.09 0.44 7.62 -51.93 -0.40 0.05 16 32 H 0.09 0.76 7.76 -51.93 -0.40 0.36 16 33 H 0.09 0.38 7.63 -51.93 -0.40 -0.01 16 34 H 0.08 0.41 7.94 -51.93 -0.41 0.00 16 35 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 38 H 0.07 0.70 7.98 -51.93 -0.41 0.28 16 39 H 0.42 5.19 8.55 -34.47 -0.29 4.90 16 40 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 41 H 0.12 2.21 8.14 -51.93 -0.42 1.78 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 46 H 0.07 0.50 7.54 -51.93 -0.39 0.10 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -36.71 383.49 -10.16 -46.86 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.70 Total: 1.86 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -0.50 Total: -24.80 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.67 Total: -41.33 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -2.81 Total: -51.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.59 Total: 46.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.71 -10.16 -46.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119432954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.410 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds