Wall clock time and date at job start Tue Mar 31 2020 17:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.32536 * 2 1 4 4 C 1.54736 * 110.45322 * 237.70893 * 2 1 3 5 5 C 1.53473 * 103.69157 * 217.31178 * 4 2 1 6 6 C 1.54444 * 110.78536 * 240.57157 * 5 4 2 7 7 C 1.55497 * 100.54822 * 203.06762 * 6 5 4 8 8 C 1.54475 * 102.53814 * 33.04685 * 7 6 5 9 9 H 1.08996 * 109.83841 * 98.15617 * 8 7 6 10 10 C 1.53005 * 109.83669 * 219.05104 * 8 7 6 11 11 N 1.46486 * 109.47551 * 185.00151 * 10 8 7 12 12 S 1.65601 * 120.00516 * 165.00099 * 11 10 8 13 13 O 1.42096 * 104.28069 * 181.07143 * 12 11 10 14 14 O 1.42099 * 104.27326 * 308.93038 * 12 11 10 15 15 C 1.81397 * 104.44799 * 64.99800 * 12 11 10 16 16 C 1.53008 * 109.47031 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.46967 * 180.02562 * 16 15 12 18 18 H 1.07999 * 120.00270 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00113 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99944 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00393 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47117 * 90.00290 * 21 19 17 23 23 H 1.48503 * 109.47497 * 210.00298 * 21 19 17 24 24 H 1.48502 * 109.47161 * 330.00000 * 21 19 17 25 25 O 1.42419 * 111.81098 * 121.81115 * 5 4 2 26 26 C 1.53443 * 105.11771 * 0.29931 * 5 4 2 27 27 O 1.44522 * 110.36524 * 122.23627 * 2 1 3 28 28 H 1.09001 * 109.46484 * 299.22283 * 1 2 3 29 29 H 1.08996 * 109.47269 * 59.21694 * 1 2 3 30 30 H 1.09000 * 109.47214 * 179.22166 * 1 2 3 31 31 H 1.08997 * 110.58601 * 98.75885 * 4 2 1 32 32 H 1.08998 * 110.58326 * 335.86016 * 4 2 1 33 33 H 1.09002 * 111.35456 * 85.22848 * 6 5 4 34 34 H 1.09007 * 111.17835 * 320.82919 * 6 5 4 35 35 H 1.09002 * 110.82790 * 274.72886 * 7 6 5 36 36 H 1.09000 * 110.82516 * 151.36066 * 7 6 5 37 37 H 1.09001 * 109.47154 * 305.00343 * 10 8 7 38 38 H 1.08999 * 109.46872 * 64.99477 * 10 8 7 39 39 H 0.97006 * 119.99725 * 345.00200 * 11 10 8 40 40 H 1.09005 * 109.47502 * 300.00285 * 15 12 11 41 41 H 1.08997 * 109.47540 * 60.00353 * 15 12 11 42 42 H 1.08997 * 109.46740 * 299.99345 * 16 15 12 43 43 H 1.08999 * 109.47356 * 60.00035 * 16 15 12 44 44 H 0.96997 * 120.00368 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.41290 * 142.01764 * 26 5 4 46 46 H 1.09004 * 110.41249 * 264.46286 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0707 -0.7745 -1.2256 5 6 3.3089 -1.4990 -0.6801 6 6 4.5810 -1.0538 -1.4343 7 6 5.5073 -2.2757 -1.1760 8 6 4.5074 -3.4526 -1.1385 9 1 4.4894 -3.9537 -2.1063 10 6 4.9146 -4.4452 -0.0476 11 7 4.0332 -5.6142 -0.0974 12 16 4.4533 -7.0027 0.7013 13 8 3.3963 -7.9071 0.4118 14 8 5.7816 -7.2663 0.2708 15 6 4.4327 -6.5398 2.4551 16 6 4.8097 -7.7534 3.3073 17 6 4.7919 -7.3690 4.7644 18 1 4.5377 -6.3600 5.0536 19 6 5.1003 -8.3054 5.7282 20 7 5.4104 -9.5340 5.3760 21 14 5.0790 -7.8289 7.5342 22 1 3.7234 -8.0651 8.0925 23 1 6.0695 -8.6508 8.2749 24 1 5.4272 -6.3918 7.6711 25 8 3.2113 -2.9103 -0.8444 26 6 3.3857 -1.1012 0.7999 27 8 2.0330 -0.7227 1.1460 28 1 -0.3632 0.5017 0.8969 29 1 -0.3633 0.5259 -0.8828 30 1 -0.3634 -1.0276 -0.0140 31 1 2.3502 -0.0848 -2.0220 32 1 1.3322 -1.4929 -1.5812 33 1 5.0000 -0.1444 -1.0034 34 1 4.3838 -0.9277 -2.4989 35 1 6.0240 -2.1755 -0.2215 36 1 6.2213 -2.3997 -1.9902 37 1 5.9454 -4.7603 -0.2095 38 1 4.8297 -3.9675 0.9284 39 1 3.2034 -5.5750 -0.5984 40 1 5.1506 -5.7379 2.6278 41 1 3.4344 -6.1990 2.7293 42 1 4.0920 -8.5555 3.1348 43 1 5.8081 -8.0939 3.0332 44 1 5.6277 -10.1928 6.0540 45 1 3.7102 -1.9479 1.4047 46 1 4.0624 -0.2569 0.9320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119432954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:34 Heat of formation + Delta-G solvation = -206.079782 kcal Electronic energy + Delta-G solvation = -27562.753377 eV Core-core repulsion = 23577.826032 eV Total energy + Delta-G solvation = -3984.927345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69160 -39.15538 -38.16946 -37.04096 -36.09736 -35.90523 -33.39463 -33.13607 -33.09807 -31.86620 -28.23653 -27.60243 -26.99145 -24.35566 -23.62473 -22.62928 -22.25151 -21.14511 -20.26921 -19.09356 -18.32841 -17.77620 -17.44309 -17.38960 -17.00391 -16.78728 -16.53579 -16.42205 -16.15672 -15.43778 -15.09133 -14.83613 -14.56273 -14.48052 -14.06800 -13.73853 -13.68932 -13.55692 -13.45434 -13.24421 -13.18585 -13.11503 -12.94347 -12.89123 -12.79377 -12.70624 -12.53886 -12.26099 -12.25383 -12.14492 -11.87704 -11.72924 -11.51185 -11.42855 -11.19717 -10.99769 -10.65606 -10.40703 -10.26795 -8.26926 -6.41020 -0.68197 1.39958 1.41975 1.53066 1.83068 2.37320 2.68025 2.79183 2.92839 3.06348 3.24220 3.40306 3.66257 3.69575 3.80003 3.84617 3.97766 4.07393 4.10962 4.17100 4.21883 4.34559 4.37967 4.49914 4.55844 4.66594 4.70363 4.74237 4.75264 4.80827 4.86880 4.93844 4.98544 5.01238 5.10430 5.16558 5.25579 5.26530 5.27406 5.28462 5.67452 5.86160 6.05084 6.07651 6.20990 6.72422 7.29108 8.85430 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.003066 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.016356 B = 9130.862857 C =10411.771822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 H 0.087 0.913 4 C -0.142 4.142 5 C 0.067 3.933 6 C -0.131 4.131 7 C -0.149 4.149 8 C 0.071 3.929 9 H 0.096 0.904 10 C 0.093 3.907 11 N -1.106 6.106 12 S 2.623 3.377 13 O -1.002 7.002 14 O -0.993 6.993 15 C -0.589 4.589 16 C 0.021 3.979 17 C -0.540 4.540 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.257 1.257 25 O -0.371 6.371 26 C 0.028 3.972 27 O -0.402 6.402 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.424 0.576 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.005 0.995 43 H 0.010 0.990 44 H 0.268 0.732 45 H 0.084 0.916 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 25.911 -16.772 31.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 H 0.105 0.895 4 C -0.179 4.179 5 C 0.027 3.973 6 C -0.168 4.168 7 C -0.188 4.188 8 C 0.012 3.988 9 H 0.114 0.886 10 C -0.033 4.033 11 N -0.867 5.867 12 S 2.720 3.280 13 O -0.992 6.992 14 O -0.983 6.983 15 C -0.721 4.721 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.573 5.573 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.181 1.181 25 O -0.291 6.291 26 C -0.049 4.049 27 O -0.322 6.322 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.259 0.741 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.023 0.977 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.940 24.742 -16.841 30.074 hybrid contribution -0.264 -0.106 1.228 1.260 sum -3.204 24.637 -15.614 29.343 Atomic orbital electron populations 1.21839 0.92870 1.02437 1.03334 1.23269 0.95941 0.95837 0.84390 0.89468 1.23057 0.96628 0.99478 0.98741 1.23159 0.97353 0.81960 0.94842 1.23308 0.92419 0.99140 1.01922 1.23254 0.98014 0.92298 1.05200 1.23145 0.83616 0.94606 0.97421 0.88594 1.22076 0.94341 0.85924 1.00997 1.55220 1.34444 1.29552 1.67500 1.04345 0.72909 0.73330 0.77431 1.93498 1.57829 1.63314 1.84555 1.93494 1.40163 1.84090 1.80567 1.30349 1.11661 1.09323 1.20816 1.18821 0.95928 0.91090 0.95978 1.21513 1.47480 0.97774 0.91149 0.90796 1.26115 0.94376 0.94763 1.04936 1.70099 1.47140 1.04298 1.35802 0.85311 0.78175 0.78874 0.77889 1.19735 1.20627 1.18135 1.88418 1.29237 1.20242 1.91190 1.23954 0.84721 1.00817 0.95396 1.89212 1.28484 1.75063 1.39414 0.92176 0.88854 0.93219 0.86849 0.90478 0.87406 0.88503 0.89086 0.87478 0.88589 0.90466 0.74056 0.83961 0.84539 0.97671 0.97152 0.92345 0.89770 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.53 71.98 0.69 -1.33 16 2 C 0.06 0.92 3.94 31.19 0.12 1.05 16 3 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.14 -1.79 6.10 31.35 0.19 -1.60 16 5 C 0.07 0.97 1.16 -10.00 -0.01 0.96 16 6 C -0.13 -1.02 5.94 31.94 0.19 -0.83 16 7 C -0.15 -1.42 6.44 31.96 0.21 -1.22 16 8 C 0.07 1.14 3.62 31.10 0.11 1.25 16 9 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 10 C 0.09 1.92 5.67 86.38 0.49 2.40 16 11 N -1.11 -29.08 5.87 -187.51 -1.10 -30.18 16 12 S 2.62 96.27 5.46 -56.49 -0.31 95.96 16 13 O -1.00 -43.79 18.08 -127.65 -2.31 -46.09 16 14 O -0.99 -41.41 17.50 -127.65 -2.23 -43.64 16 15 C -0.59 -23.08 6.01 71.98 0.43 -22.65 16 16 C 0.02 1.11 4.98 29.85 0.15 1.25 16 17 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 18 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 21 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 O -0.37 -7.32 10.30 -148.98 -1.53 -8.85 16 26 C 0.03 0.48 6.88 72.13 0.50 0.98 16 27 O -0.40 -9.03 11.35 -148.98 -1.69 -10.72 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.11 0.77 7.62 -2.39 -0.02 0.75 16 32 H 0.08 1.20 7.76 -2.39 -0.02 1.18 16 33 H 0.11 0.46 7.63 -2.39 -0.02 0.44 16 34 H 0.10 0.54 7.94 -2.38 -0.02 0.53 16 35 H 0.09 0.78 7.85 -2.39 -0.02 0.76 16 36 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 1.90 7.69 -2.39 -0.02 1.88 16 38 H 0.08 1.46 7.98 -2.39 -0.02 1.44 16 39 H 0.42 10.25 8.55 -96.74 -0.83 9.43 16 40 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 41 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 42 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.08 1.66 7.93 -2.39 -0.02 1.64 16 46 H 0.09 1.08 7.54 -2.38 -0.02 1.07 16 Total: -1.00 -81.21 383.49 -2.96 -84.18 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.14 Total: 20.41 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 3.76 Total: -49.80 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -0.81 Total: -87.44 kcal Atomic # 8 Polarization: -101.54 SS G_CDS: -7.77 Total: -109.30 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 96.27 SS G_CDS: -0.31 Total: 95.96 kcal Total: -81.21 -2.96 -84.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119432954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.901 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds