Wall clock time and date at job start Tue Mar 31 2020 17:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82045 * 2 1 4 4 C 1.54595 * 109.89467 * 239.08143 * 2 1 3 5 5 C 1.54119 * 102.12654 * 220.08296 * 4 2 1 6 6 C 1.52975 * 111.10804 * 274.01435 * 5 4 2 7 7 C 1.55113 * 103.64630 * 235.35976 * 6 5 4 8 8 C 1.55095 * 102.13070 * 339.16449 * 7 6 5 9 9 H 1.08997 * 110.70078 * 277.68100 * 8 7 6 10 10 C 1.52998 * 110.57986 * 154.85229 * 8 7 6 11 11 N 1.46497 * 109.47057 * 184.25202 * 10 8 7 12 12 S 1.65602 * 119.99493 * 165.00037 * 11 10 8 13 13 O 1.42105 * 104.27429 * 181.07097 * 12 11 10 14 14 O 1.42094 * 104.28193 * 308.92810 * 12 11 10 15 15 C 1.81405 * 104.45048 * 65.00569 * 12 11 10 16 16 C 1.52998 * 109.47225 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47098 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47401 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46637 * 120.00359 * 21 19 17 24 24 H 1.48495 * 109.47256 * 240.00297 * 21 19 17 25 25 O 1.42412 * 111.58356 * 152.49070 * 5 4 2 26 26 C 1.53768 * 102.29204 * 32.86432 * 5 4 2 27 27 O 1.43332 * 109.82373 * 120.87163 * 2 1 3 28 28 H 1.08998 * 109.46959 * 300.70545 * 1 2 3 29 29 H 1.09009 * 109.46924 * 60.70096 * 1 2 3 30 30 H 1.09001 * 109.47313 * 180.69705 * 1 2 3 31 31 H 1.09001 * 110.87101 * 338.23601 * 4 2 1 32 32 H 1.08997 * 110.87296 * 101.92296 * 4 2 1 33 33 H 1.09002 * 110.58900 * 353.90168 * 6 5 4 34 34 H 1.08994 * 110.58964 * 116.81959 * 6 5 4 35 35 H 1.09005 * 110.87091 * 220.99993 * 7 6 5 36 36 H 1.09004 * 110.86938 * 97.32278 * 7 6 5 37 37 H 1.09001 * 109.47346 * 304.25626 * 10 8 7 38 38 H 1.09001 * 109.46727 * 64.25559 * 10 8 7 39 39 H 0.96991 * 120.00505 * 345.00195 * 11 10 8 40 40 H 1.09003 * 109.46648 * 299.99711 * 15 12 11 41 41 H 1.08994 * 109.47124 * 59.99127 * 15 12 11 42 42 H 1.08994 * 109.47170 * 299.99666 * 16 15 12 43 43 H 1.09007 * 109.46957 * 59.99487 * 16 15 12 44 44 H 0.96999 * 119.99732 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.32613 * 206.08756 * 26 5 4 46 46 H 1.09002 * 110.40554 * 83.92083 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0561 -0.7469 -1.2471 5 6 3.2503 -1.5341 -0.6732 6 6 4.5210 -0.6824 -0.6697 7 6 5.5391 -1.5407 -1.4651 8 6 4.9252 -2.9607 -1.3541 9 1 5.1959 -3.4244 -0.4056 10 6 5.3762 -3.8347 -2.5262 11 7 4.7041 -5.1343 -2.4530 12 16 4.7033 -6.1411 -3.7679 13 8 3.9524 -7.2706 -3.3439 14 8 4.2524 -5.3210 -4.8370 15 6 6.4468 -6.5861 -3.9984 16 6 6.5789 -7.5261 -5.1983 17 6 8.0273 -7.8952 -5.3902 18 1 8.7784 -7.4993 -4.7228 19 6 8.3934 -8.7392 -6.4172 20 7 7.4786 -9.2217 -7.2296 21 14 10.1889 -9.1962 -6.6554 22 1 11.0123 -8.5259 -5.6171 23 1 10.3449 -10.6683 -6.5363 24 1 10.6367 -8.7583 -8.0018 25 8 3.4992 -2.7236 -1.4157 26 6 2.7812 -1.8431 0.7582 27 8 2.0161 -0.6919 1.1573 28 1 -0.3633 0.5247 0.8836 29 1 -0.3633 0.5030 -0.8963 30 1 -0.3634 -1.0276 0.0125 31 1 1.2988 -1.4239 -1.6425 32 1 2.3861 -0.0429 -2.0110 33 1 4.3462 0.2689 -1.1723 34 1 4.8706 -0.5198 0.3498 35 1 6.5240 -1.5059 -0.9994 36 1 5.5887 -1.2194 -2.5056 37 1 5.1184 -3.3446 -3.4651 38 1 6.4553 -3.9803 -2.4766 39 1 4.2597 -5.4052 -1.6346 40 1 7.0314 -5.6836 -4.1773 41 1 6.8155 -7.0863 -3.1030 42 1 5.9943 -8.4284 -5.0191 43 1 6.2099 -7.0261 -6.0939 44 1 7.7363 -9.8152 -7.9523 45 1 3.6391 -1.9748 1.4176 46 1 2.1557 -2.7358 0.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119432957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:44 Heat of formation + Delta-G solvation = -176.864507 kcal Electronic energy + Delta-G solvation = -27182.525806 eV Core-core repulsion = 23198.865330 eV Total energy + Delta-G solvation = -3983.660476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13907 -38.58209 -36.56138 -35.44911 -35.13942 -33.89780 -32.70308 -32.50172 -31.24949 -31.16557 -27.54234 -26.58085 -25.60795 -23.68700 -22.15587 -21.65651 -21.19055 -20.78810 -18.90010 -17.53926 -17.06299 -17.01137 -16.67288 -16.15619 -16.10676 -15.52981 -15.34210 -15.12351 -14.65446 -14.54754 -13.96968 -13.83652 -13.55745 -13.46929 -13.30219 -12.97407 -12.85755 -12.52856 -12.35967 -12.26629 -12.07755 -11.96948 -11.75243 -11.55637 -11.50112 -11.47112 -11.15529 -11.10616 -11.03629 -10.96301 -10.95252 -10.40980 -10.39296 -10.01770 -9.81768 -9.81176 -9.48986 -9.01765 -8.51647 -6.13427 -4.18985 0.80772 3.03317 3.22078 3.24230 3.31474 3.34634 3.60550 3.90402 4.13280 4.17234 4.28425 4.37385 4.39531 4.49751 4.58005 4.69523 4.77479 4.85984 4.90603 4.94092 5.05262 5.21790 5.23093 5.30534 5.31094 5.33939 5.35279 5.40980 5.46932 5.55100 5.57321 5.65061 5.66546 5.67210 5.74708 5.83566 5.95022 6.47923 6.53311 6.67502 7.11738 7.29994 7.36153 7.79627 8.16629 8.84676 9.45763 10.97635 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.002291 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.821661 B =12218.979114 C =12722.815865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.082 0.918 4 C -0.145 4.145 5 C 0.070 3.930 6 C -0.138 4.138 7 C -0.150 4.150 8 C 0.068 3.932 9 H 0.081 0.919 10 C 0.122 3.878 11 N -1.123 6.123 12 S 2.594 3.406 13 O -0.967 6.967 14 O -0.966 6.966 15 C -0.591 4.591 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 O -0.338 6.338 26 C 0.040 3.960 27 O -0.375 6.375 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.414 0.586 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.087 0.913 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 20.537 16.407 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.099 0.901 4 C -0.183 4.183 5 C 0.029 3.971 6 C -0.176 4.176 7 C -0.188 4.188 8 C 0.009 3.991 9 H 0.099 0.901 10 C -0.004 4.004 11 N -0.880 5.880 12 S 2.691 3.309 13 O -0.957 6.957 14 O -0.956 6.956 15 C -0.724 4.724 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 O -0.257 6.257 26 C -0.037 4.037 27 O -0.294 6.294 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.247 0.753 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.991 20.183 15.696 26.787 hybrid contribution 1.602 -0.338 0.276 1.660 sum -6.389 19.845 15.972 26.263 Atomic orbital electron populations 1.22149 0.94595 1.02906 1.02406 1.22734 0.94668 0.96142 0.84424 0.90056 1.23168 0.97646 0.99401 0.98069 1.22856 0.96013 0.86489 0.91764 1.22836 0.93662 0.99205 1.01867 1.23252 0.99457 0.93841 1.02259 1.23517 0.81339 0.95474 0.98767 0.90083 1.21355 0.96579 0.83263 0.99240 1.55662 1.70612 1.28949 1.32814 1.05520 0.78897 0.73367 0.73068 1.93553 1.69437 1.51641 1.81101 1.93538 1.79851 1.67755 1.54421 1.30462 1.20778 1.10643 1.10513 1.18968 0.99982 0.93034 0.89212 1.21038 0.91725 1.29064 1.14077 0.92008 1.25083 0.97981 0.95821 0.95707 1.69966 1.33085 1.32424 1.17313 0.86411 0.84416 0.78317 0.78102 1.19677 1.20811 1.20804 1.88886 1.23179 1.41325 1.72319 1.23652 0.95773 0.89637 0.94613 1.88501 1.70584 1.40507 1.29826 0.91848 0.91321 0.91970 0.89126 0.89236 0.89801 0.89897 0.89374 0.89534 0.89372 0.90120 0.75269 0.86397 0.86099 0.94806 0.94800 0.92576 0.89451 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.44 37.16 0.35 -0.77 16 2 C 0.08 0.59 4.08 -25.89 -0.11 0.49 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -1.16 5.74 -25.31 -0.15 -1.31 16 5 C 0.07 0.60 1.05 -89.65 -0.09 0.50 16 6 C -0.14 -0.91 6.21 -25.63 -0.16 -1.07 16 7 C -0.15 -0.99 6.61 -24.51 -0.16 -1.16 16 8 C 0.07 0.59 3.44 -25.62 -0.09 0.50 16 9 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 10 C 0.12 1.29 5.89 -4.04 -0.02 1.27 16 11 N -1.12 -14.51 5.81 -10.61 -0.06 -14.57 16 12 S 2.59 46.28 5.46 -107.50 -0.59 45.69 16 13 O -0.97 -20.32 18.08 -57.54 -1.04 -21.36 16 14 O -0.97 -20.23 17.50 -57.54 -1.01 -21.23 16 15 C -0.59 -11.00 6.01 37.16 0.22 -10.78 16 16 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 17 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 O -0.34 -3.70 10.63 -35.23 -0.37 -4.07 16 26 C 0.04 0.35 6.92 37.56 0.26 0.61 16 27 O -0.37 -3.62 11.03 -35.23 -0.39 -4.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.08 0.48 7.47 -51.93 -0.39 0.10 16 34 H 0.08 0.48 7.53 -51.93 -0.39 0.09 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.41 4.72 8.62 -34.47 -0.30 4.43 16 40 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 41 H 0.12 2.02 8.14 -51.93 -0.42 1.59 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.09 0.64 7.75 -51.93 -0.40 0.24 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -36.22 383.97 -10.17 -46.39 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.72 Total: 1.23 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -0.49 Total: -24.22 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.67 Total: -40.25 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.81 Total: -50.67 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 46.28 SS G_CDS: -0.59 Total: 45.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.22 -10.17 -46.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119432957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.476 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds