Wall clock time and date at job start Tue Mar 31 2020 17:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82045 * 2 1 4 4 C 1.54595 * 109.89467 * 239.08143 * 2 1 3 5 5 C 1.54119 * 102.12654 * 220.08296 * 4 2 1 6 6 C 1.52975 * 111.10804 * 274.01435 * 5 4 2 7 7 C 1.55113 * 103.64630 * 235.35976 * 6 5 4 8 8 C 1.55095 * 102.13070 * 339.16449 * 7 6 5 9 9 H 1.08997 * 110.70078 * 277.68100 * 8 7 6 10 10 C 1.52998 * 110.57986 * 154.85229 * 8 7 6 11 11 N 1.46497 * 109.47057 * 184.25202 * 10 8 7 12 12 S 1.65602 * 119.99493 * 165.00037 * 11 10 8 13 13 O 1.42105 * 104.27429 * 181.07097 * 12 11 10 14 14 O 1.42094 * 104.28193 * 308.92810 * 12 11 10 15 15 C 1.81405 * 104.45048 * 65.00569 * 12 11 10 16 16 C 1.52998 * 109.47225 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47098 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47401 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46637 * 120.00359 * 21 19 17 24 24 H 1.48495 * 109.47256 * 240.00297 * 21 19 17 25 25 O 1.42412 * 111.58356 * 152.49070 * 5 4 2 26 26 C 1.53768 * 102.29204 * 32.86432 * 5 4 2 27 27 O 1.43332 * 109.82373 * 120.87163 * 2 1 3 28 28 H 1.08998 * 109.46959 * 300.70545 * 1 2 3 29 29 H 1.09009 * 109.46924 * 60.70096 * 1 2 3 30 30 H 1.09001 * 109.47313 * 180.69705 * 1 2 3 31 31 H 1.09001 * 110.87101 * 338.23601 * 4 2 1 32 32 H 1.08997 * 110.87296 * 101.92296 * 4 2 1 33 33 H 1.09002 * 110.58900 * 353.90168 * 6 5 4 34 34 H 1.08994 * 110.58964 * 116.81959 * 6 5 4 35 35 H 1.09005 * 110.87091 * 220.99993 * 7 6 5 36 36 H 1.09004 * 110.86938 * 97.32278 * 7 6 5 37 37 H 1.09001 * 109.47346 * 304.25626 * 10 8 7 38 38 H 1.09001 * 109.46727 * 64.25559 * 10 8 7 39 39 H 0.96991 * 120.00505 * 345.00195 * 11 10 8 40 40 H 1.09003 * 109.46648 * 299.99711 * 15 12 11 41 41 H 1.08994 * 109.47124 * 59.99127 * 15 12 11 42 42 H 1.08994 * 109.47170 * 299.99666 * 16 15 12 43 43 H 1.09007 * 109.46957 * 59.99487 * 16 15 12 44 44 H 0.96999 * 119.99732 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.32613 * 206.08756 * 26 5 4 46 46 H 1.09002 * 110.40554 * 83.92083 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0561 -0.7469 -1.2471 5 6 3.2503 -1.5341 -0.6732 6 6 4.5210 -0.6824 -0.6697 7 6 5.5391 -1.5407 -1.4651 8 6 4.9252 -2.9607 -1.3541 9 1 5.1959 -3.4244 -0.4056 10 6 5.3762 -3.8347 -2.5262 11 7 4.7041 -5.1343 -2.4530 12 16 4.7033 -6.1411 -3.7679 13 8 3.9524 -7.2706 -3.3439 14 8 4.2524 -5.3210 -4.8370 15 6 6.4468 -6.5861 -3.9984 16 6 6.5789 -7.5261 -5.1983 17 6 8.0273 -7.8952 -5.3902 18 1 8.7784 -7.4993 -4.7228 19 6 8.3934 -8.7392 -6.4172 20 7 7.4786 -9.2217 -7.2296 21 14 10.1889 -9.1962 -6.6554 22 1 11.0123 -8.5259 -5.6171 23 1 10.3449 -10.6683 -6.5363 24 1 10.6367 -8.7583 -8.0018 25 8 3.4992 -2.7236 -1.4157 26 6 2.7812 -1.8431 0.7582 27 8 2.0161 -0.6919 1.1573 28 1 -0.3633 0.5247 0.8836 29 1 -0.3633 0.5030 -0.8963 30 1 -0.3634 -1.0276 0.0125 31 1 1.2988 -1.4239 -1.6425 32 1 2.3861 -0.0429 -2.0110 33 1 4.3462 0.2689 -1.1723 34 1 4.8706 -0.5198 0.3498 35 1 6.5240 -1.5059 -0.9994 36 1 5.5887 -1.2194 -2.5056 37 1 5.1184 -3.3446 -3.4651 38 1 6.4553 -3.9803 -2.4766 39 1 4.2597 -5.4052 -1.6346 40 1 7.0314 -5.6836 -4.1773 41 1 6.8155 -7.0863 -3.1030 42 1 5.9943 -8.4284 -5.0191 43 1 6.2099 -7.0261 -6.0939 44 1 7.7363 -9.8152 -7.9523 45 1 3.6391 -1.9748 1.4176 46 1 2.1557 -2.7358 0.7688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119432957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:43 Heat of formation + Delta-G solvation = -205.179713 kcal Electronic energy + Delta-G solvation = -27183.753646 eV Core-core repulsion = 23198.865330 eV Total energy + Delta-G solvation = -3984.888315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.76737 -39.25597 -38.13862 -37.00189 -36.14734 -35.88075 -33.32479 -33.11314 -33.10447 -31.94045 -28.29632 -27.57953 -27.19231 -24.36344 -23.60610 -22.72264 -21.83472 -21.41863 -20.26771 -19.08800 -18.31627 -17.78967 -17.62078 -17.42216 -17.00624 -16.77275 -16.51480 -16.23290 -16.07888 -15.57856 -15.13051 -14.62171 -14.54344 -14.43930 -14.18298 -14.06043 -13.71924 -13.61057 -13.48066 -13.42270 -13.18286 -13.09876 -12.94460 -12.90549 -12.76015 -12.68174 -12.54618 -12.23891 -12.10114 -12.08652 -11.92526 -11.72439 -11.68373 -11.49977 -11.16357 -10.66796 -10.64826 -10.47519 -10.33873 -8.25102 -6.38992 -0.66166 1.42059 1.42676 1.55911 1.86848 2.38889 2.49444 2.84444 2.98846 3.08580 3.27672 3.33357 3.56194 3.60428 3.78954 3.91777 3.98533 4.02043 4.13052 4.17633 4.23173 4.26820 4.37563 4.46674 4.62570 4.66726 4.67977 4.70650 4.77003 4.78779 4.84225 4.91246 4.94054 5.00262 5.09596 5.12817 5.21693 5.27660 5.29054 5.30168 5.69833 5.90963 6.03736 6.07015 6.14523 6.75479 7.31235 8.87439 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.002291 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.821661 B =12218.979114 C =12722.815865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.099 0.901 4 C -0.147 4.147 5 C 0.064 3.936 6 C -0.133 4.133 7 C -0.144 4.144 8 C 0.064 3.936 9 H 0.099 0.901 10 C 0.109 3.891 11 N -1.106 6.106 12 S 2.618 3.382 13 O -1.003 7.003 14 O -1.001 7.001 15 C -0.584 4.584 16 C 0.018 3.982 17 C -0.535 4.535 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.936 5.936 21 Si 0.976 3.024 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.279 1.279 25 O -0.368 6.368 26 C 0.040 3.960 27 O -0.391 6.391 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.424 0.576 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.102 0.898 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 22.394 18.101 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.116 0.884 4 C -0.184 4.184 5 C 0.024 3.976 6 C -0.171 4.171 7 C -0.182 4.182 8 C 0.006 3.994 9 H 0.117 0.883 10 C -0.017 4.017 11 N -0.867 5.867 12 S 2.716 3.284 13 O -0.994 6.994 14 O -0.990 6.990 15 C -0.717 4.717 16 C -0.021 4.021 17 C -0.574 4.574 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.799 3.201 22 H -0.177 1.177 23 H -0.206 1.206 24 H -0.205 1.205 25 O -0.288 6.288 26 C -0.037 4.037 27 O -0.311 6.311 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.260 0.740 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.666 22.048 17.406 28.656 hybrid contribution 0.796 -0.862 -0.213 1.193 sum -4.870 21.186 17.193 27.716 Atomic orbital electron populations 1.22157 0.94360 1.02276 1.03223 1.22871 0.94953 0.96645 0.83640 0.88366 1.23192 0.97277 0.99394 0.98577 1.22991 0.97129 0.86243 0.91241 1.22842 0.92388 0.99120 1.02727 1.23268 1.00420 0.92049 1.02493 1.23681 0.80691 0.96523 0.98543 0.88294 1.21757 0.98278 0.81932 0.99744 1.55152 1.70840 1.29107 1.31631 1.04475 0.78077 0.72742 0.73150 1.93496 1.70419 1.53698 1.81767 1.93493 1.80376 1.68483 1.56675 1.30314 1.22213 1.10602 1.08534 1.18840 0.98942 0.93205 0.91120 1.21561 0.92904 1.28782 1.14188 0.90286 1.26158 1.03072 0.95855 0.95473 1.70118 1.35747 1.33466 1.18211 0.85239 0.78418 0.77967 0.78449 1.17669 1.20609 1.20466 1.88861 1.24614 1.42450 1.72871 1.23674 0.95885 0.88888 0.95278 1.88478 1.70895 1.40814 1.30922 0.91605 0.89943 0.93306 0.90901 0.87986 0.88854 0.88732 0.86967 0.89754 0.90702 0.86853 0.74048 0.83461 0.83607 0.97734 0.97535 0.92466 0.87967 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.44 71.98 0.68 -1.46 16 2 C 0.08 1.07 4.08 31.14 0.13 1.20 16 3 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.15 -2.23 5.74 31.52 0.18 -2.05 16 5 C 0.06 1.01 1.05 -10.16 -0.01 1.00 16 6 C -0.13 -1.37 6.21 31.31 0.19 -1.18 16 7 C -0.14 -1.44 6.61 32.04 0.21 -1.23 16 8 C 0.06 0.96 3.44 31.31 0.11 1.06 16 9 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 10 C 0.11 2.03 5.89 86.38 0.51 2.54 16 11 N -1.11 -26.94 5.81 -187.50 -1.09 -28.03 16 12 S 2.62 93.30 5.46 -56.49 -0.31 92.99 16 13 O -1.00 -42.92 18.08 -127.65 -2.31 -45.23 16 14 O -1.00 -42.62 17.50 -127.65 -2.23 -44.86 16 15 C -0.58 -21.08 6.01 71.98 0.43 -20.65 16 16 C 0.02 0.92 4.98 29.85 0.15 1.07 16 17 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 20 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 21 Si 0.98 42.79 29.54 68.60 2.03 44.81 16 22 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 O -0.37 -7.63 10.63 -148.98 -1.58 -9.22 16 26 C 0.04 0.65 6.92 72.24 0.50 1.15 16 27 O -0.39 -7.16 11.03 -148.98 -1.64 -8.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.35 7.85 -2.39 -0.02 1.33 16 32 H 0.10 1.24 7.67 -2.39 -0.02 1.22 16 33 H 0.09 0.80 7.47 -2.39 -0.02 0.78 16 34 H 0.09 0.77 7.53 -2.39 -0.02 0.76 16 35 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 0.90 8.04 -2.38 -0.02 0.88 16 37 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.42 9.05 8.62 -96.76 -0.83 8.21 16 40 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 41 H 0.15 4.52 8.14 -2.39 -0.02 4.50 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 45 H 0.10 1.31 7.75 -2.39 -0.02 1.29 16 46 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.37 383.97 -2.95 -83.32 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.13 Total: 19.03 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 3.78 Total: -47.42 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -0.80 Total: -84.64 kcal Atomic # 8 Polarization: -100.33 SS G_CDS: -7.77 Total: -108.10 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 93.30 SS G_CDS: -0.31 Total: 92.99 kcal Total: -80.37 -2.95 -83.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119432957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.860 kcal (2) G-P(sol) polarization free energy of solvation -80.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds