Wall clock time and date at job start Tue Mar 31 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34229 * 116.99672 * 2 1 4 4 O 1.20826 * 120.00385 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99597 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47100 * 179.97438 * 5 3 2 7 7 S 1.81404 * 109.47283 * 180.02562 * 6 5 3 8 8 O 1.42097 * 108.57879 * 65.51243 * 7 6 5 9 9 O 1.42096 * 108.57725 * 294.48910 * 7 6 5 10 10 C 1.81404 * 101.92080 * 180.02562 * 7 6 5 11 11 C 1.52999 * 109.46592 * 179.97438 * 10 7 6 12 12 C 1.53007 * 109.46573 * 179.97438 * 11 10 7 13 13 H 1.09001 * 109.46995 * 55.00123 * 12 11 10 14 14 C 1.53003 * 109.46661 * 174.99683 * 12 11 10 15 15 N 1.46897 * 109.47250 * 294.99789 * 12 11 10 16 16 C 1.47477 * 111.00478 * 273.19914 * 15 12 11 17 17 C 1.53507 * 87.93400 * 221.29643 * 16 15 12 18 18 C 1.50700 * 114.16759 * 139.66813 * 17 16 15 19 19 H 1.08003 * 120.00317 * 266.15878 * 18 17 16 20 20 C 1.37881 * 120.00083 * 86.16047 * 18 17 16 21 21 N 1.31519 * 119.99689 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46974 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46894 * 120.00080 * 22 20 18 25 25 H 1.48494 * 109.47119 * 240.00206 * 22 20 18 26 26 C 1.47481 * 110.99838 * 177.22525 * 15 12 11 27 27 H 1.09000 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47187 * 300.00568 * 1 2 3 29 29 H 1.09000 * 109.46898 * 60.00122 * 1 2 3 30 30 H 1.09003 * 109.47315 * 60.00235 * 5 3 2 31 31 H 1.09002 * 109.47333 * 299.99923 * 5 3 2 32 32 H 1.09003 * 109.47364 * 59.99890 * 6 5 3 33 33 H 1.09002 * 109.46966 * 300.00150 * 6 5 3 34 34 H 1.09002 * 109.47037 * 59.99799 * 10 7 6 35 35 H 1.09004 * 109.47060 * 299.99952 * 10 7 6 36 36 H 1.08997 * 109.47187 * 60.00384 * 11 10 7 37 37 H 1.08999 * 109.46994 * 299.99546 * 11 10 7 38 38 H 1.09006 * 109.47102 * 50.12693 * 14 12 11 39 39 H 1.09003 * 109.46783 * 170.11587 * 14 12 11 40 40 H 1.08994 * 109.47496 * 290.11682 * 14 12 11 41 41 H 1.09008 * 113.47107 * 336.06543 * 16 15 12 42 42 H 1.08997 * 113.47329 * 106.52491 * 16 15 12 43 43 H 1.08993 * 114.34402 * 272.36240 * 17 16 15 44 44 H 0.97002 * 119.99604 * 179.97438 * 21 20 18 45 45 H 1.08998 * 113.47811 * 253.46866 * 26 15 12 46 46 H 1.08996 * 113.47590 * 23.88168 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 16 5.8117 2.8371 -0.0002 8 8 6.2931 2.3026 -1.2257 9 8 6.2930 2.3038 1.2258 10 6 6.0930 4.6292 -0.0004 11 6 7.5971 4.9092 0.0002 12 6 7.8344 6.4208 -0.0006 13 1 7.3080 6.8716 0.8407 14 6 9.3331 6.7017 0.1258 15 7 7.3327 6.9945 -1.2564 16 6 8.3614 6.9376 -2.3116 17 6 7.9314 8.3507 -2.7297 18 6 9.0754 9.2606 -3.0963 19 1 9.5057 9.9140 -2.3518 20 6 9.5728 9.2589 -4.3823 21 7 9.0491 8.4628 -5.2888 22 14 10.9904 10.3872 -4.8370 23 1 11.3967 11.1760 -3.6462 24 1 12.1400 9.5730 -5.3067 25 1 10.5617 11.3091 -5.9193 26 6 7.4848 8.4615 -1.2651 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9565 0.7806 -0.8892 31 1 3.9558 0.7810 0.8908 32 1 3.6101 3.2368 0.8893 33 1 3.6108 3.2356 -0.8907 34 1 5.6417 5.0678 0.8896 35 1 5.6417 5.0677 -0.8904 36 1 8.0487 4.4705 -0.8896 37 1 8.0480 4.4707 0.8905 38 1 9.8771 6.1098 -0.6103 39 1 9.5202 7.7611 -0.0500 40 1 9.6696 6.4347 1.1275 41 1 9.3791 6.8902 -1.9239 42 1 8.1632 6.1810 -3.0708 43 1 7.1130 8.3769 -3.4490 44 1 9.3987 8.4619 -6.1936 45 1 6.5437 8.9963 -1.1374 46 1 8.2678 8.8208 -0.5973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257930411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:47 Heat of formation + Delta-G solvation = -145.279935 kcal Electronic energy + Delta-G solvation = -26637.264310 eV Core-core repulsion = 22654.973444 eV Total energy + Delta-G solvation = -3982.290866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57156 -41.21360 -38.00482 -37.74485 -37.08956 -36.10310 -34.46805 -34.36005 -31.50329 -29.11667 -29.05356 -26.65865 -26.53583 -26.02323 -24.60756 -21.94349 -21.50240 -19.87845 -19.67962 -18.98245 -18.77600 -17.92214 -17.90029 -17.25137 -17.02063 -16.82542 -16.73328 -16.34313 -16.13820 -15.52122 -15.45937 -14.74960 -14.58934 -14.31501 -14.11910 -14.07333 -14.05572 -13.81326 -13.18853 -13.13295 -13.04137 -13.01340 -12.93298 -12.86082 -12.63311 -12.59835 -12.35268 -12.27450 -12.16027 -12.00339 -11.85728 -11.73879 -11.71970 -11.53234 -11.10069 -10.99743 -10.77578 -10.46542 -9.50882 -8.13392 -6.24040 -1.02121 1.04498 1.41225 1.43437 1.54412 1.65248 1.81300 2.42929 2.64001 3.10801 3.16307 3.26882 3.34714 3.67792 3.75239 3.82776 3.89461 4.02796 4.22079 4.25282 4.30449 4.32396 4.42092 4.44334 4.48682 4.49825 4.61526 4.68754 4.69979 4.73556 4.76075 4.79862 4.98159 5.09449 5.11841 5.21030 5.28440 5.33327 5.36347 5.64363 5.66537 5.89754 6.33470 6.47403 6.59224 6.86351 7.44308 8.96341 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.002222 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.066795 B =12598.988942 C =13185.423651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.532 6.532 5 C -0.116 4.116 6 C -0.599 4.599 7 S 2.435 3.565 8 O -0.976 6.976 9 O -0.963 6.963 10 C -0.589 4.589 11 C -0.103 4.103 12 C 0.049 3.951 13 H 0.100 0.900 14 C -0.186 4.186 15 N -0.473 5.473 16 C 0.000 4.000 17 C 0.019 3.981 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.955 3.045 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.006 3.994 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.071 0.929 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 -15.449 15.410 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.421 6.421 5 C -0.154 4.154 6 C -0.728 4.728 7 S 2.622 3.378 8 O -0.973 6.973 9 O -0.961 6.961 10 C -0.720 4.720 11 C -0.142 4.142 12 C -0.061 4.061 13 H 0.118 0.882 14 C -0.244 4.244 15 N -0.195 5.195 16 C -0.129 4.129 17 C -0.001 4.001 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.781 3.219 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.122 4.122 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.260 -16.281 15.176 25.908 hybrid contribution 0.644 1.589 -0.737 1.866 sum -12.617 -14.692 14.438 24.156 Atomic orbital electron populations 1.23592 0.74510 1.05880 1.02677 1.86498 1.25221 1.32601 1.83643 1.23664 0.92159 0.81326 0.71484 1.90682 1.67783 1.37190 1.46446 1.21214 0.88939 0.95793 1.09437 1.30196 1.24297 1.03392 1.14951 1.07419 0.77883 0.78682 0.73866 1.93561 1.78881 1.77829 1.47046 1.93541 1.78728 1.77606 1.46181 1.30108 1.05122 1.22664 1.14081 1.21328 0.92534 0.96979 1.03388 1.22152 0.94583 0.94790 0.94592 0.88226 1.22486 0.97049 1.02134 1.02737 1.68911 1.38081 1.07572 1.04952 1.24076 0.95173 0.99820 0.93857 1.20030 0.95219 0.92926 0.91884 1.21408 1.16562 1.22528 0.95728 0.92215 1.25833 0.99425 0.96868 0.96582 1.70110 1.42992 1.39496 1.03625 0.85546 0.79171 0.78829 0.78347 1.18663 1.20847 1.20803 1.23883 0.99971 0.89879 0.98509 0.84974 0.91669 0.91985 0.84629 0.83864 0.81958 0.83067 0.81810 0.83957 0.92182 0.88366 0.92842 0.92496 0.89901 0.90777 0.94452 0.95693 0.93004 0.91041 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.58 10.57 -51.41 -0.54 -6.12 16 3 C 0.47 8.17 7.96 71.24 0.57 8.73 16 4 O -0.53 -12.12 15.73 21.96 0.35 -11.77 16 5 C -0.12 -1.52 5.82 29.85 0.17 -1.34 16 6 C -0.60 -7.77 5.10 71.98 0.37 -7.40 16 7 S 2.43 45.11 4.72 -56.49 -0.27 44.85 16 8 O -0.98 -26.87 18.10 -127.37 -2.31 -29.17 16 9 O -0.96 -21.97 18.10 -127.37 -2.30 -24.28 16 10 C -0.59 -11.02 5.69 71.98 0.41 -10.61 16 11 C -0.10 -2.55 4.82 30.60 0.15 -2.40 16 12 C 0.05 1.37 2.41 44.92 0.11 1.48 16 13 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.19 -5.28 7.72 71.98 0.56 -4.73 16 15 N -0.47 -17.16 5.80 -902.45 -5.23 -22.39 16 16 C 0.00 -0.01 6.83 83.57 0.57 0.56 16 17 C 0.02 0.92 3.77 -11.20 -0.04 0.88 16 18 C -0.52 -28.14 8.82 25.60 0.23 -27.92 16 19 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 20 C 0.01 0.66 5.46 84.65 0.46 1.12 16 21 N -0.92 -54.32 13.26 21.45 0.28 -54.04 16 22 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.01 0.24 7.10 83.58 0.59 0.83 16 27 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.16 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.15 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.14 2.91 7.75 -2.39 -0.02 2.89 16 36 H 0.06 1.73 8.06 -2.39 -0.02 1.71 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.66 6.51 -2.38 -0.02 1.64 16 39 H 0.06 1.80 5.84 -2.39 -0.01 1.78 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 41 H 0.07 3.26 4.78 -2.38 -0.01 3.25 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.02 1.40 8.11 -2.39 -0.02 1.39 16 44 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 46 H 0.07 2.58 5.93 -2.39 -0.01 2.56 16 Total: -1.00 -77.49 388.03 -1.70 -79.18 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.96 Total: 17.95 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 5.33 Total: -39.33 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -4.95 Total: -76.43 kcal Atomic # 8 Polarization: -66.54 SS G_CDS: -4.81 Total: -71.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 45.11 SS G_CDS: -0.27 Total: 44.85 kcal Total: -77.49 -1.70 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257930411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.096 kcal (2) G-P(sol) polarization free energy of solvation -77.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds