Wall clock time and date at job start Tue Mar 31 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99992 * 2 1 4 4 O 1.20831 * 119.99753 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00361 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47409 * 180.02562 * 5 3 2 7 7 S 1.81398 * 109.47243 * 179.97438 * 6 5 3 8 8 O 1.42105 * 108.57805 * 65.50983 * 7 6 5 9 9 O 1.42097 * 108.57862 * 294.48320 * 7 6 5 10 10 C 1.81400 * 101.92199 * 179.97438 * 7 6 5 11 11 C 1.53006 * 109.47145 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 7 13 13 H 1.08998 * 109.47192 * 305.00392 * 12 11 10 14 14 C 1.53001 * 109.47049 * 185.00237 * 12 11 10 15 15 N 1.46905 * 109.46980 * 65.00539 * 12 11 10 16 16 C 1.47491 * 110.99498 * 275.96783 * 15 12 11 17 17 C 1.53515 * 87.93033 * 221.29671 * 16 15 12 18 18 C 1.50698 * 114.16829 * 139.67229 * 17 16 15 19 19 H 1.07999 * 120.00277 * 266.15973 * 18 17 16 20 20 C 1.37877 * 119.99786 * 86.16145 * 18 17 16 21 21 N 1.31517 * 119.99879 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00191 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47032 * 90.00059 * 22 20 18 24 24 H 1.48501 * 109.47249 * 209.99969 * 22 20 18 25 25 H 1.48501 * 109.47416 * 330.00467 * 22 20 18 26 26 C 1.47480 * 110.99975 * 180.02562 * 15 12 11 27 27 H 1.09000 * 109.46549 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46671 * 299.99446 * 1 2 3 29 29 H 1.08994 * 109.47324 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.47127 * 59.99354 * 5 3 2 31 31 H 1.09003 * 109.46717 * 300.00408 * 5 3 2 32 32 H 1.08997 * 109.47793 * 59.99407 * 6 5 3 33 33 H 1.09007 * 109.46890 * 299.99398 * 6 5 3 34 34 H 1.09001 * 109.46713 * 60.00078 * 10 7 6 35 35 H 1.08993 * 109.47294 * 299.99610 * 10 7 6 36 36 H 1.09001 * 109.46801 * 300.00406 * 11 10 7 37 37 H 1.09001 * 109.46998 * 60.00003 * 11 10 7 38 38 H 1.08998 * 109.47250 * 300.00119 * 14 12 11 39 39 H 1.08998 * 109.47252 * 60.00195 * 14 12 11 40 40 H 1.09000 * 109.46959 * 180.02562 * 14 12 11 41 41 H 1.08997 * 113.47504 * 336.06343 * 16 15 12 42 42 H 1.09000 * 113.46764 * 106.53068 * 16 15 12 43 43 H 1.08996 * 114.16900 * 272.38262 * 17 16 15 44 44 H 0.96994 * 119.99765 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.47031 * 253.47135 * 26 15 12 46 46 H 1.09005 * 113.47568 * 23.86746 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 16 5.8116 2.8371 0.0002 8 8 6.2930 2.3039 -1.2258 9 8 6.2929 2.3028 1.2258 10 6 6.0929 4.6292 0.0004 11 6 7.5970 4.9094 0.0011 12 6 7.8343 6.4208 0.0019 13 1 7.3086 6.8716 -0.8399 14 6 9.3330 6.7019 -0.1232 15 7 7.3315 6.9947 1.2573 16 6 5.8838 7.2637 1.1730 17 6 6.1431 8.5861 1.9082 18 6 5.3458 9.7514 1.3817 19 1 5.7733 10.4053 0.6359 20 6 4.0706 9.9829 1.8520 21 7 3.3750 11.0002 1.3929 22 14 3.3310 8.8517 3.1414 23 1 3.6563 9.3657 4.4961 24 1 1.8565 8.8041 2.9710 25 1 3.8921 7.4860 2.9823 26 6 7.5431 8.4538 1.2934 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7806 0.8891 32 1 3.6107 3.2358 0.8905 33 1 3.6100 3.2368 -0.8894 34 1 5.6415 5.0677 0.8904 35 1 5.6417 5.0678 -0.8895 36 1 8.0479 4.4707 0.8913 37 1 8.0487 4.4707 -0.8887 38 1 9.8587 6.2512 0.7186 39 1 9.7061 6.2761 -1.0546 40 1 9.5021 7.7787 -0.1222 41 1 5.5258 7.3973 0.1522 42 1 5.2777 6.5607 1.7444 43 1 6.1231 8.5039 2.9949 44 1 2.4777 11.1629 1.7235 45 1 8.3437 8.7598 1.9669 46 1 7.6287 8.9048 0.3047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257930412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:51 Heat of formation + Delta-G solvation = -123.771786 kcal Electronic energy + Delta-G solvation = -27188.596097 eV Core-core repulsion = 23207.237894 eV Total energy + Delta-G solvation = -3981.358203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84408 -39.69470 -37.14103 -37.02674 -36.22642 -34.98779 -33.80602 -32.46224 -30.88622 -28.52025 -27.87067 -25.84155 -25.11086 -24.28148 -23.27297 -21.20148 -20.05838 -19.16244 -18.74179 -18.22701 -17.23190 -17.20259 -17.00945 -16.56284 -16.25950 -15.93571 -15.83189 -14.89888 -14.78098 -14.10715 -13.99908 -13.84342 -13.71244 -13.50351 -13.38478 -13.21523 -12.67493 -12.42612 -12.34536 -12.24867 -12.16455 -12.02306 -11.95036 -11.70028 -11.59112 -11.48877 -11.34263 -11.21028 -11.20301 -10.99108 -10.88335 -10.53829 -10.30757 -10.02083 -9.76559 -9.49166 -9.16381 -8.60872 -8.21564 -6.16481 -4.17108 -0.26416 1.78139 2.25882 2.51883 3.24137 3.33619 3.35091 3.35455 3.82436 3.91210 4.32235 4.35711 4.42137 4.50726 4.53781 4.72026 4.77915 4.81445 4.81828 4.95864 5.02694 5.12214 5.15009 5.34699 5.36420 5.46807 5.54356 5.71597 5.75478 5.86279 5.92686 5.94734 5.96743 6.14688 6.27187 6.37005 6.42371 6.46053 6.62137 6.90087 7.28817 7.31110 7.62582 7.78954 8.42709 8.86819 9.46376 10.96017 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.003710 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.643394 B = 7546.336185 C = 9968.144342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.104 4.104 6 C -0.615 4.615 7 S 2.416 3.584 8 O -0.939 6.939 9 O -0.933 6.933 10 C -0.610 4.610 11 C -0.093 4.093 12 C 0.051 3.949 13 H 0.053 0.947 14 C -0.147 4.147 15 N -0.479 5.479 16 C -0.015 4.015 17 C -0.001 4.001 18 C -0.511 4.511 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.258 1.258 26 C 0.012 3.988 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.265 0.735 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -21.135 -4.440 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.384 6.384 5 C -0.142 4.142 6 C -0.742 4.742 7 S 2.599 3.401 8 O -0.936 6.936 9 O -0.930 6.930 10 C -0.740 4.740 11 C -0.132 4.132 12 C -0.059 4.059 13 H 0.071 0.929 14 C -0.205 4.205 15 N -0.202 5.202 16 C -0.144 4.144 17 C -0.021 4.021 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.129 4.129 21 N -0.535 5.535 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.183 1.183 26 C -0.117 4.117 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.324 -21.922 -3.942 22.313 hybrid contribution -1.853 0.743 -0.122 2.000 sum -0.529 -21.179 -4.064 21.572 Atomic orbital electron populations 1.23324 0.75802 1.03909 1.02869 1.86490 1.23850 1.33087 1.84139 1.23360 0.91590 0.81572 0.72658 1.90724 1.66929 1.36245 1.44466 1.20984 0.90050 0.95468 1.07695 1.30374 1.27321 1.02804 1.13691 1.08154 0.77227 0.79184 0.75485 1.93580 1.77389 1.77053 1.45569 1.93598 1.77217 1.76830 1.45374 1.30464 1.07247 1.23203 1.13108 1.21293 0.90120 0.98333 1.03497 1.22126 0.96437 0.93567 0.93814 0.92950 1.21845 0.94799 1.02208 1.01609 1.68953 1.08206 1.13402 1.29648 1.24501 0.88984 0.99940 1.00998 1.20526 0.92453 0.93126 0.95958 1.20910 0.98990 1.10813 1.24218 0.90818 1.25018 0.97002 0.94765 0.96085 1.69906 1.11493 1.28670 1.43421 0.86896 0.78250 0.82335 0.82338 1.20190 1.21485 1.18271 1.23723 0.99980 0.87644 1.00324 0.87856 0.91649 0.91670 0.85877 0.85836 0.83746 0.83840 0.83380 0.84777 0.89533 0.90373 0.91918 0.92526 0.92064 0.91532 0.91868 0.92532 0.92552 0.91544 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.29 10.57 -39.25 -0.41 -3.70 16 3 C 0.47 4.86 7.96 36.00 0.29 5.14 16 4 O -0.50 -6.69 15.73 -18.75 -0.30 -6.98 16 5 C -0.10 -0.85 5.82 -27.89 -0.16 -1.02 16 6 C -0.62 -5.37 5.10 37.15 0.19 -5.18 16 7 S 2.42 25.12 4.72 -107.50 -0.51 24.62 16 8 O -0.94 -11.80 18.10 -57.83 -1.05 -12.85 16 9 O -0.93 -12.54 18.10 -57.83 -1.05 -13.59 16 10 C -0.61 -6.84 5.03 37.16 0.19 -6.66 16 11 C -0.09 -1.17 4.90 -26.73 -0.13 -1.30 16 12 C 0.05 0.74 1.98 -67.71 -0.13 0.60 16 13 H 0.05 0.78 7.52 -51.93 -0.39 0.39 16 14 C -0.15 -1.85 9.09 37.16 0.34 -1.51 16 15 N -0.48 -8.33 6.11 -236.73 -1.45 -9.78 16 16 C -0.02 -0.30 4.54 -7.59 -0.03 -0.33 16 17 C 0.00 -0.03 2.96 -91.26 -0.27 -0.30 16 18 C -0.51 -13.64 9.37 -34.44 -0.32 -13.96 16 19 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 22 Si 0.87 20.70 27.14 -169.99 -4.61 16.08 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.26 -5.68 5.68 56.52 0.32 -5.36 16 26 C 0.01 0.22 6.01 -7.62 -0.05 0.18 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.14 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.14 1.09 8.10 -51.92 -0.42 0.67 16 34 H 0.15 1.80 5.09 -51.92 -0.26 1.53 16 35 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.79 7.03 -51.93 -0.37 0.43 16 41 H 0.07 1.29 7.49 -51.93 -0.39 0.90 16 42 H 0.06 1.18 5.77 -51.93 -0.30 0.88 16 43 H 0.06 1.29 7.04 -51.93 -0.37 0.92 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.18 7.62 -51.93 -0.40 0.78 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -35.74 382.74 -9.56 -45.30 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.60 Total: 2.03 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 0.87 Total: -21.08 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.67 Total: -35.59 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.80 Total: -37.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.61 Total: 16.08 kcal Atomic # 16 Polarization: 25.12 SS G_CDS: -0.51 Total: 24.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.74 -9.56 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257930412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.473 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds