Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99992 * 2 1 4 4 O 1.20831 * 119.99753 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00361 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47409 * 180.02562 * 5 3 2 7 7 S 1.81398 * 109.47243 * 179.97438 * 6 5 3 8 8 O 1.42105 * 108.57805 * 65.50983 * 7 6 5 9 9 O 1.42097 * 108.57862 * 294.48320 * 7 6 5 10 10 C 1.81400 * 101.92199 * 179.97438 * 7 6 5 11 11 C 1.53006 * 109.47145 * 179.97438 * 10 7 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 7 13 13 H 1.08998 * 109.47192 * 305.00392 * 12 11 10 14 14 C 1.53001 * 109.47049 * 185.00237 * 12 11 10 15 15 N 1.46905 * 109.46980 * 65.00539 * 12 11 10 16 16 C 1.47491 * 110.99498 * 275.96783 * 15 12 11 17 17 C 1.53515 * 87.93033 * 221.29671 * 16 15 12 18 18 C 1.50698 * 114.16829 * 139.67229 * 17 16 15 19 19 H 1.07999 * 120.00277 * 266.15973 * 18 17 16 20 20 C 1.37877 * 119.99786 * 86.16145 * 18 17 16 21 21 N 1.31517 * 119.99879 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00191 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47032 * 90.00059 * 22 20 18 24 24 H 1.48501 * 109.47249 * 209.99969 * 22 20 18 25 25 H 1.48501 * 109.47416 * 330.00467 * 22 20 18 26 26 C 1.47480 * 110.99975 * 180.02562 * 15 12 11 27 27 H 1.09000 * 109.46549 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46671 * 299.99446 * 1 2 3 29 29 H 1.08994 * 109.47324 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.47127 * 59.99354 * 5 3 2 31 31 H 1.09003 * 109.46717 * 300.00408 * 5 3 2 32 32 H 1.08997 * 109.47793 * 59.99407 * 6 5 3 33 33 H 1.09007 * 109.46890 * 299.99398 * 6 5 3 34 34 H 1.09001 * 109.46713 * 60.00078 * 10 7 6 35 35 H 1.08993 * 109.47294 * 299.99610 * 10 7 6 36 36 H 1.09001 * 109.46801 * 300.00406 * 11 10 7 37 37 H 1.09001 * 109.46998 * 60.00003 * 11 10 7 38 38 H 1.08998 * 109.47250 * 300.00119 * 14 12 11 39 39 H 1.08998 * 109.47252 * 60.00195 * 14 12 11 40 40 H 1.09000 * 109.46959 * 180.02562 * 14 12 11 41 41 H 1.08997 * 113.47504 * 336.06343 * 16 15 12 42 42 H 1.09000 * 113.46764 * 106.53068 * 16 15 12 43 43 H 1.08996 * 114.16900 * 272.38262 * 17 16 15 44 44 H 0.96994 * 119.99765 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.47031 * 253.47135 * 26 15 12 46 46 H 1.09005 * 113.47568 * 23.86746 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 16 5.8116 2.8371 0.0002 8 8 6.2930 2.3039 -1.2258 9 8 6.2929 2.3028 1.2258 10 6 6.0929 4.6292 0.0004 11 6 7.5970 4.9094 0.0011 12 6 7.8343 6.4208 0.0019 13 1 7.3086 6.8716 -0.8399 14 6 9.3330 6.7019 -0.1232 15 7 7.3315 6.9947 1.2573 16 6 5.8838 7.2637 1.1730 17 6 6.1431 8.5861 1.9082 18 6 5.3458 9.7514 1.3817 19 1 5.7733 10.4053 0.6359 20 6 4.0706 9.9829 1.8520 21 7 3.3750 11.0002 1.3929 22 14 3.3310 8.8517 3.1414 23 1 3.6563 9.3657 4.4961 24 1 1.8565 8.8041 2.9710 25 1 3.8921 7.4860 2.9823 26 6 7.5431 8.4538 1.2934 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7806 0.8891 32 1 3.6107 3.2358 0.8905 33 1 3.6100 3.2368 -0.8894 34 1 5.6415 5.0677 0.8904 35 1 5.6417 5.0678 -0.8895 36 1 8.0479 4.4707 0.8913 37 1 8.0487 4.4707 -0.8887 38 1 9.8587 6.2512 0.7186 39 1 9.7061 6.2761 -1.0546 40 1 9.5021 7.7787 -0.1222 41 1 5.5258 7.3973 0.1522 42 1 5.2777 6.5607 1.7444 43 1 6.1231 8.5039 2.9949 44 1 2.4777 11.1629 1.7235 45 1 8.3437 8.7598 1.9669 46 1 7.6287 8.9048 0.3047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257930412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = -151.550587 kcal Electronic energy + Delta-G solvation = -27189.800676 eV Core-core repulsion = 23207.237894 eV Total energy + Delta-G solvation = -3982.562782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59877 -41.14050 -38.05742 -37.77079 -37.14884 -36.22605 -34.51377 -34.42839 -31.98202 -29.56600 -29.11131 -26.80924 -26.35791 -25.65259 -24.56073 -21.93989 -21.27607 -20.47420 -19.89763 -19.02949 -18.93865 -17.98351 -17.94355 -17.59594 -17.10130 -16.96044 -16.75961 -16.40002 -15.68354 -15.51433 -15.30571 -14.96712 -14.67101 -14.57936 -14.54539 -14.11645 -13.86327 -13.51225 -13.37967 -13.18929 -13.12630 -13.09183 -13.00107 -12.96241 -12.68184 -12.64154 -12.53776 -12.46059 -12.06137 -11.91927 -11.88256 -11.82874 -11.73454 -11.58031 -11.24803 -11.10486 -10.97614 -10.56712 -9.68829 -8.29043 -6.33543 -1.08586 1.02322 1.37299 1.39932 1.50652 1.62227 1.72819 2.37011 2.56602 3.02840 3.05664 3.21809 3.22888 3.56575 3.68495 3.79353 3.90113 3.90834 4.13011 4.22750 4.27444 4.28853 4.29689 4.37349 4.39424 4.44077 4.57746 4.61332 4.67651 4.70580 4.72457 4.79755 4.88296 4.98874 5.06186 5.09560 5.17020 5.26227 5.27227 5.51330 5.52318 5.65182 6.30236 6.34548 6.57179 6.72484 7.33255 8.86983 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.003710 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.643394 B = 7546.336185 C = 9968.144342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.534 6.534 5 C -0.113 4.113 6 C -0.609 4.609 7 S 2.445 3.555 8 O -0.959 6.959 9 O -0.964 6.964 10 C -0.619 4.619 11 C -0.099 4.099 12 C 0.045 3.955 13 H 0.049 0.951 14 C -0.146 4.146 15 N -0.471 5.471 16 C -0.005 4.005 17 C -0.021 4.021 18 C -0.510 4.510 19 H 0.033 0.967 20 C 0.016 3.984 21 N -0.949 5.949 22 Si 0.936 3.064 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.229 1.229 26 C 0.020 3.980 27 H 0.134 0.866 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.265 0.735 45 H 0.077 0.923 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -23.984 -4.291 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.424 6.424 5 C -0.151 4.151 6 C -0.737 4.737 7 S 2.631 3.369 8 O -0.957 6.957 9 O -0.961 6.961 10 C -0.749 4.749 11 C -0.138 4.138 12 C -0.065 4.065 13 H 0.067 0.933 14 C -0.203 4.203 15 N -0.194 5.194 16 C -0.134 4.134 17 C -0.041 4.041 18 C -0.548 4.548 19 H 0.051 0.949 20 C -0.182 4.182 21 N -0.589 5.589 22 Si 0.760 3.240 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.152 1.152 26 C -0.108 4.108 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.761 -24.803 -3.796 25.153 hybrid contribution -1.950 1.647 -0.248 2.565 sum -0.189 -23.156 -4.044 23.507 Atomic orbital electron populations 1.23588 0.74586 1.05899 1.02582 1.86490 1.25123 1.32459 1.83648 1.23728 0.92284 0.81328 0.71496 1.90709 1.67862 1.37356 1.46435 1.21213 0.88796 0.95413 1.09709 1.30278 1.24991 1.03730 1.14736 1.07203 0.77523 0.78104 0.74105 1.93549 1.78550 1.77315 1.46250 1.93556 1.78585 1.77342 1.46610 1.30516 1.06649 1.24067 1.13696 1.21347 0.91189 0.96717 1.04511 1.22256 0.97485 0.94792 0.91971 0.93332 1.21852 0.93483 1.01936 1.03040 1.68925 1.06776 1.12000 1.31721 1.24287 0.90614 0.98026 1.00439 1.20559 0.94284 0.93051 0.96160 1.21137 0.99304 1.11501 1.22870 0.94904 1.25873 0.97564 0.96303 0.98422 1.70057 1.12073 1.31132 1.45665 0.85910 0.77110 0.81715 0.79295 1.19894 1.21775 1.15174 1.23575 0.98365 0.88992 0.99908 0.84789 0.92072 0.91884 0.83703 0.84070 0.83240 0.82557 0.84105 0.82931 0.89736 0.88295 0.91602 0.90203 0.92845 0.91839 0.90598 0.92535 0.92603 0.90434 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.95 10.57 -51.41 -0.54 -6.49 16 3 C 0.47 8.92 7.96 71.23 0.57 9.49 16 4 O -0.53 -13.73 15.73 21.95 0.35 -13.38 16 5 C -0.11 -1.58 5.82 29.84 0.17 -1.41 16 6 C -0.61 -9.12 5.10 71.98 0.37 -8.75 16 7 S 2.45 45.07 4.72 -56.49 -0.27 44.80 16 8 O -0.96 -21.79 18.10 -127.37 -2.30 -24.09 16 9 O -0.96 -23.95 18.10 -127.37 -2.31 -26.26 16 10 C -0.62 -12.34 5.03 71.98 0.36 -11.98 16 11 C -0.10 -2.21 4.90 30.60 0.15 -2.06 16 12 C 0.05 1.20 1.98 44.91 0.09 1.29 16 13 H 0.05 1.35 7.52 -2.39 -0.02 1.33 16 14 C -0.15 -3.32 9.09 71.98 0.65 -2.66 16 15 N -0.47 -15.46 6.11 -902.88 -5.52 -20.98 16 16 C 0.00 -0.17 4.54 83.54 0.38 0.21 16 17 C -0.02 -0.93 2.96 -11.21 -0.03 -0.96 16 18 C -0.51 -27.78 9.37 25.60 0.24 -27.54 16 19 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 20 C 0.02 0.89 5.47 84.65 0.46 1.35 16 21 N -0.95 -57.97 13.96 21.45 0.30 -57.67 16 22 Si 0.94 42.38 27.14 68.60 1.86 44.24 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.23 -9.17 5.68 99.48 0.57 -8.61 16 26 C 0.02 0.75 6.01 83.53 0.50 1.26 16 27 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.15 2.16 8.10 -2.39 -0.02 2.14 16 33 H 0.16 1.97 8.10 -2.39 -0.02 1.95 16 34 H 0.14 3.05 5.09 -2.39 -0.01 3.04 16 35 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.29 7.03 -2.39 -0.02 1.27 16 41 H 0.06 2.37 7.49 -2.39 -0.02 2.35 16 42 H 0.08 2.61 5.77 -2.39 -0.01 2.60 16 43 H 0.06 2.49 7.04 -2.39 -0.02 2.47 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.06 2.12 7.62 -2.38 -0.02 2.10 16 Total: -1.00 -77.90 382.74 -2.50 -80.41 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.82 Total: 19.66 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 5.11 Total: -40.25 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -5.22 Total: -78.64 kcal Atomic # 8 Polarization: -65.42 SS G_CDS: -4.81 Total: -70.22 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.86 Total: 44.24 kcal Atomic # 16 Polarization: 45.07 SS G_CDS: -0.27 Total: 44.80 kcal Total: -77.90 -2.50 -80.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257930412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.145 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds