Wall clock time and date at job start Tue Mar 31 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46599 * 2 1 4 4 O 1.42902 * 109.47152 * 239.99870 * 2 1 3 5 5 C 1.42900 * 113.99821 * 89.99636 * 4 2 1 6 6 C 1.53006 * 109.46976 * 89.99801 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 C 1.52997 * 109.47084 * 209.99741 * 5 4 2 11 11 C 1.50698 * 109.46877 * 119.99823 * 2 1 3 12 12 O 1.21286 * 120.00166 * 120.00571 * 11 2 1 13 13 N 1.34781 * 120.00115 * 299.99885 * 11 2 1 14 14 S 1.65597 * 119.99803 * 180.02562 * 13 11 2 15 15 O 1.42101 * 104.27682 * 181.07388 * 14 13 11 16 16 O 1.42101 * 104.27918 * 308.92928 * 14 13 11 17 17 C 1.81400 * 104.45095 * 65.00158 * 14 13 11 18 18 C 1.53007 * 109.46872 * 180.02562 * 17 14 13 19 19 C 1.50705 * 109.46501 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00450 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99436 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47223 * 119.99760 * 23 21 19 26 26 H 1.48503 * 109.47141 * 240.00201 * 23 21 19 27 27 H 1.09001 * 109.47410 * 299.99465 * 1 2 3 28 28 H 1.08999 * 109.47331 * 60.00519 * 1 2 3 29 29 H 1.09008 * 109.46669 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47130 * 330.00032 * 5 4 2 31 31 H 1.08998 * 109.46505 * 59.99598 * 6 5 4 32 32 H 1.08996 * 109.46884 * 300.00479 * 6 5 4 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 38 38 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.47045 * 60.00217 * 10 5 4 40 40 H 1.09001 * 109.47375 * 300.00142 * 10 5 4 41 41 H 0.96999 * 119.99789 * 0.02562 * 13 11 2 42 42 H 1.08997 * 109.46945 * 299.99598 * 17 14 13 43 43 H 1.09000 * 109.47047 * 60.00284 * 17 14 13 44 44 H 1.08997 * 109.46976 * 299.99541 * 18 17 14 45 45 H 1.08991 * 109.46951 * 59.99998 * 18 17 14 46 46 H 0.97005 * 120.00035 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 3.6292 0.7291 -2.2800 7 6 3.8368 1.6457 -3.4873 8 6 3.6065 0.8526 -4.7753 9 6 2.1774 0.3065 -4.7894 10 6 1.9697 -0.6097 -3.5823 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2499 2.4546 14 16 2.2592 -1.0301 3.8067 15 8 1.7057 -0.2924 4.8878 16 8 1.9097 -2.3909 3.5935 17 6 4.0598 -0.8186 3.7474 18 6 4.6941 -1.5050 4.9589 19 6 6.1900 -1.3287 4.9099 20 1 6.6429 -0.7822 4.0961 21 6 6.9803 -1.8660 5.9038 22 7 6.4287 -2.5328 6.8941 23 14 8.8345 -1.6481 5.8428 24 1 9.2015 -0.8656 4.6353 25 1 9.2881 -0.9246 7.0577 26 1 9.4879 -2.9805 5.7873 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.4938 1.0118 -2.2462 31 1 4.3353 -0.0998 -2.3278 32 1 3.7933 1.2937 -1.3622 33 1 4.8550 2.0345 -3.4775 34 1 3.1305 2.4746 -3.4398 35 1 3.7548 1.5056 -5.6354 36 1 4.3127 0.0237 -4.8228 37 1 1.4712 1.1353 -4.7419 38 1 2.0132 -0.2581 -5.7072 39 1 0.9515 -0.9988 -3.5924 40 1 2.6759 -1.4386 -3.6302 41 1 1.1487 0.5386 2.5436 42 1 4.4482 -1.2657 2.8324 43 1 4.3015 0.2441 3.7637 44 1 4.3057 -1.0583 5.8742 45 1 4.4523 -2.5676 4.9422 46 1 6.9847 -2.9105 7.5936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320639591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:25 Heat of formation + Delta-G solvation = -185.967933 kcal Electronic energy + Delta-G solvation = -27378.582443 eV Core-core repulsion = 23394.527213 eV Total energy + Delta-G solvation = -3984.055230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49732 -39.21406 -36.89661 -36.61778 -35.62240 -34.59188 -33.89210 -31.83665 -31.17697 -31.14056 -29.56699 -25.64983 -25.21373 -22.98386 -22.64745 -21.73955 -21.27146 -20.24265 -19.44936 -18.08752 -17.68882 -17.07197 -16.50399 -15.94346 -15.88513 -15.33603 -15.14710 -14.83479 -14.68802 -14.54636 -14.36911 -14.05706 -13.72391 -13.43654 -13.14884 -12.84883 -12.59476 -12.54194 -12.46463 -12.36451 -12.16163 -11.80164 -11.72651 -11.61873 -11.47864 -11.34636 -11.09052 -11.01067 -10.99275 -10.95249 -10.85636 -10.62667 -10.40381 -10.35022 -10.11711 -9.74971 -9.66681 -9.16654 -8.49501 -6.11571 -4.16865 0.47735 2.03733 2.55935 3.26994 3.28189 3.34071 3.37932 3.97858 4.11785 4.34622 4.35422 4.38225 4.48233 4.57053 4.62376 4.63025 4.79311 4.85455 4.89071 4.92382 5.11773 5.13441 5.16397 5.23014 5.23900 5.29378 5.45865 5.58691 5.63792 5.65531 5.72390 5.73093 5.76133 5.83451 5.85592 5.95021 6.05549 6.45214 6.55371 6.86766 7.29030 7.35811 7.48119 7.81842 8.17431 8.86351 9.47695 10.99629 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003033 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.258893 B = 9230.252167 C =10979.799887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.096 0.904 4 O -0.349 6.349 5 C 0.088 3.912 6 C -0.146 4.146 7 C -0.116 4.116 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.532 3.468 12 O -0.464 6.464 13 N -1.057 6.057 14 S 2.565 3.435 15 O -0.953 6.953 16 O -0.936 6.936 17 C -0.575 4.575 18 C 0.029 3.971 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.427 0.573 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 11.800 -22.404 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 H 0.114 0.886 4 O -0.267 6.267 5 C 0.030 3.970 6 C -0.184 4.184 7 C -0.154 4.154 8 C -0.161 4.161 9 C -0.153 4.153 10 C -0.154 4.154 11 C 0.316 3.684 12 O -0.332 6.332 13 N -0.820 5.820 14 S 2.666 3.334 15 O -0.944 6.944 16 O -0.926 6.926 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.262 0.738 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.916 10.299 -21.768 26.868 hybrid contribution 1.147 1.079 -0.118 1.579 sum -10.768 11.378 -21.887 26.915 Atomic orbital electron populations 1.22291 0.93093 1.04453 1.03397 1.21977 0.95403 0.96504 0.85410 0.88633 1.88114 1.86104 1.33923 1.18549 1.22260 0.95990 0.92626 0.86075 1.22106 0.97599 1.00198 0.98517 1.21493 1.01894 0.97873 0.94152 1.21591 0.96995 1.00008 0.97547 1.21494 0.97055 0.99106 0.97662 1.21572 1.02850 0.98786 0.92158 1.20373 0.79393 0.84247 0.84410 1.90936 1.33515 1.22836 1.85925 1.55462 1.61159 1.43148 1.22250 1.06746 0.79888 0.74462 0.72347 1.93591 1.77813 1.72873 1.50125 1.93603 1.82513 1.33080 1.83426 1.30343 1.18391 1.10578 1.11703 1.18999 0.97459 0.95980 0.88554 1.21018 0.90113 1.35576 1.09079 0.91904 1.25068 0.99322 0.94872 0.95237 1.69966 1.35770 1.35322 1.11798 0.86389 0.84688 0.78036 0.78036 1.19618 1.20810 1.20738 0.90667 0.90776 0.90556 0.91936 0.90520 0.91723 0.91511 0.92005 0.91874 0.91614 0.91928 0.91359 0.91171 0.90709 0.73797 0.85047 0.86033 0.94737 0.94533 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.42 37.16 0.35 -0.93 16 2 C 0.07 0.69 2.93 -27.88 -0.08 0.61 16 3 H 0.10 0.64 7.62 -51.93 -0.40 0.25 16 4 O -0.35 -4.09 9.17 -55.14 -0.51 -4.59 16 5 C 0.09 0.75 2.40 -26.73 -0.06 0.68 16 6 C -0.15 -1.24 5.53 -26.73 -0.15 -1.39 16 7 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 8 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 9 C -0.12 -0.68 5.92 -26.76 -0.16 -0.83 16 10 C -0.12 -0.89 5.57 -26.76 -0.15 -1.04 16 11 C 0.53 7.45 6.97 -10.98 -0.08 7.37 16 12 O -0.46 -8.73 14.60 -22.96 -0.34 -9.07 16 13 N -1.06 -13.44 5.50 31.22 0.17 -13.27 16 14 S 2.57 46.97 5.11 -107.50 -0.55 46.42 16 15 O -0.95 -18.74 18.08 -57.54 -1.04 -19.78 16 16 O -0.94 -20.84 17.04 -64.79 -1.10 -21.94 16 17 C -0.58 -11.56 5.82 37.16 0.22 -11.34 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 23 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 28 H 0.07 0.40 7.96 -51.93 -0.41 -0.01 16 29 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.41 7.62 -51.93 -0.40 0.01 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.54 7.96 -51.93 -0.41 0.13 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.43 3.44 8.21 -34.47 -0.28 3.16 16 42 H 0.13 2.63 7.19 -51.93 -0.37 2.26 16 43 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 44 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -37.74 385.63 -10.52 -48.26 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.71 Total: -0.84 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.98 Total: -21.45 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.91 Total: -39.31 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.98 Total: -55.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.55 Total: 46.42 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.74 -10.52 -48.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320639591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.708 kcal (2) G-P(sol) polarization free energy of solvation -37.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds