Wall clock time and date at job start Tue Mar 31 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46599 * 2 1 4 4 O 1.42902 * 109.47152 * 239.99870 * 2 1 3 5 5 C 1.42900 * 113.99821 * 89.99636 * 4 2 1 6 6 C 1.53006 * 109.46976 * 89.99801 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 C 1.52997 * 109.47084 * 209.99741 * 5 4 2 11 11 C 1.50698 * 109.46877 * 119.99823 * 2 1 3 12 12 O 1.21286 * 120.00166 * 120.00571 * 11 2 1 13 13 N 1.34781 * 120.00115 * 299.99885 * 11 2 1 14 14 S 1.65597 * 119.99803 * 180.02562 * 13 11 2 15 15 O 1.42101 * 104.27682 * 181.07388 * 14 13 11 16 16 O 1.42101 * 104.27918 * 308.92928 * 14 13 11 17 17 C 1.81400 * 104.45095 * 65.00158 * 14 13 11 18 18 C 1.53007 * 109.46872 * 180.02562 * 17 14 13 19 19 C 1.50705 * 109.46501 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00450 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99436 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47223 * 119.99760 * 23 21 19 26 26 H 1.48503 * 109.47141 * 240.00201 * 23 21 19 27 27 H 1.09001 * 109.47410 * 299.99465 * 1 2 3 28 28 H 1.08999 * 109.47331 * 60.00519 * 1 2 3 29 29 H 1.09008 * 109.46669 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47130 * 330.00032 * 5 4 2 31 31 H 1.08998 * 109.46505 * 59.99598 * 6 5 4 32 32 H 1.08996 * 109.46884 * 300.00479 * 6 5 4 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 38 38 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.47045 * 60.00217 * 10 5 4 40 40 H 1.09001 * 109.47375 * 300.00142 * 10 5 4 41 41 H 0.96999 * 119.99789 * 0.02562 * 13 11 2 42 42 H 1.08997 * 109.46945 * 299.99598 * 17 14 13 43 43 H 1.09000 * 109.47047 * 60.00284 * 17 14 13 44 44 H 1.08997 * 109.46976 * 299.99541 * 18 17 14 45 45 H 1.08991 * 109.46951 * 59.99998 * 18 17 14 46 46 H 0.97005 * 120.00035 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 3.6292 0.7291 -2.2800 7 6 3.8368 1.6457 -3.4873 8 6 3.6065 0.8526 -4.7753 9 6 2.1774 0.3065 -4.7894 10 6 1.9697 -0.6097 -3.5823 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2499 2.4546 14 16 2.2592 -1.0301 3.8067 15 8 1.7057 -0.2924 4.8878 16 8 1.9097 -2.3909 3.5935 17 6 4.0598 -0.8186 3.7474 18 6 4.6941 -1.5050 4.9589 19 6 6.1900 -1.3287 4.9099 20 1 6.6429 -0.7822 4.0961 21 6 6.9803 -1.8660 5.9038 22 7 6.4287 -2.5328 6.8941 23 14 8.8345 -1.6481 5.8428 24 1 9.2015 -0.8656 4.6353 25 1 9.2881 -0.9246 7.0577 26 1 9.4879 -2.9805 5.7873 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.4938 1.0118 -2.2462 31 1 4.3353 -0.0998 -2.3278 32 1 3.7933 1.2937 -1.3622 33 1 4.8550 2.0345 -3.4775 34 1 3.1305 2.4746 -3.4398 35 1 3.7548 1.5056 -5.6354 36 1 4.3127 0.0237 -4.8228 37 1 1.4712 1.1353 -4.7419 38 1 2.0132 -0.2581 -5.7072 39 1 0.9515 -0.9988 -3.5924 40 1 2.6759 -1.4386 -3.6302 41 1 1.1487 0.5386 2.5436 42 1 4.4482 -1.2657 2.8324 43 1 4.3015 0.2441 3.7637 44 1 4.3057 -1.0583 5.8742 45 1 4.4523 -2.5676 4.9422 46 1 6.9847 -2.9105 7.5936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320639591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:24 Heat of formation + Delta-G solvation = -213.345057 kcal Electronic energy + Delta-G solvation = -27379.769605 eV Core-core repulsion = 23394.527213 eV Total energy + Delta-G solvation = -3985.242391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54375 -39.98243 -38.33721 -37.47993 -37.25969 -36.00125 -35.76843 -33.20566 -32.52915 -31.68325 -30.17084 -27.67967 -26.06800 -23.76964 -23.51735 -23.25679 -22.23605 -20.84661 -20.79645 -19.46036 -18.91287 -18.45412 -17.83995 -17.37223 -16.88050 -16.60638 -16.52719 -16.41938 -15.65637 -15.53925 -15.22397 -15.02515 -14.70385 -14.51431 -14.36185 -13.88160 -13.78445 -13.75097 -13.46480 -13.40268 -13.28596 -13.13543 -13.01238 -12.98515 -12.86122 -12.81421 -12.35770 -12.25875 -12.05579 -12.03138 -11.93117 -11.76700 -11.61139 -11.46892 -11.21486 -11.14949 -11.02219 -10.68218 -10.42147 -8.29371 -6.43473 -1.05029 0.90980 1.31321 1.38683 1.40221 1.53424 2.34668 2.43097 2.56465 3.03605 3.04708 3.21176 3.74342 3.77982 3.80403 3.88475 3.97658 4.00681 4.03190 4.07752 4.26833 4.30534 4.37059 4.58201 4.60429 4.65571 4.66166 4.70025 4.77894 4.98659 5.07154 5.14148 5.19896 5.20844 5.21253 5.25660 5.26607 5.33144 5.41642 5.52960 5.60239 5.64780 6.01652 6.16841 6.43623 6.69252 7.26541 8.83379 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003033 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.258893 B = 9230.252167 C =10979.799887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.137 0.863 4 O -0.382 6.382 5 C 0.085 3.915 6 C -0.149 4.149 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.117 4.117 11 C 0.528 3.472 12 O -0.518 6.518 13 N -1.032 6.032 14 S 2.601 3.399 15 O -0.966 6.966 16 O -0.979 6.979 17 C -0.579 4.579 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.073 0.927 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.976 3.024 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.279 1.279 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.452 0.548 42 H 0.130 0.870 43 H 0.154 0.846 44 H 0.018 0.982 45 H 0.003 0.997 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 14.889 -24.352 31.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 H 0.155 0.845 4 O -0.301 6.301 5 C 0.028 3.972 6 C -0.187 4.187 7 C -0.150 4.150 8 C -0.163 4.163 9 C -0.147 4.147 10 C -0.155 4.155 11 C 0.315 3.685 12 O -0.390 6.390 13 N -0.801 5.801 14 S 2.699 3.301 15 O -0.956 6.956 16 O -0.969 6.969 17 C -0.712 4.712 18 C -0.016 4.016 19 C -0.580 4.580 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.799 3.201 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.204 1.204 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.292 0.708 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.036 0.964 45 H 0.022 0.978 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.504 13.430 -23.711 29.982 hybrid contribution 1.259 0.125 0.430 1.336 sum -11.246 13.555 -23.282 29.193 Atomic orbital electron populations 1.22367 0.90739 1.03989 1.06019 1.22208 0.96910 0.97199 0.82674 0.84548 1.88096 1.86477 1.35860 1.19687 1.22468 0.96459 0.93135 0.85160 1.22126 0.97222 0.99675 0.99640 1.21483 1.02412 0.97869 0.93239 1.21610 0.96928 0.99793 0.97965 1.21476 0.97161 0.99244 0.96853 1.21596 1.02300 0.98604 0.92976 1.21409 0.78026 0.83548 0.85516 1.90922 1.36145 1.25477 1.86436 1.54835 1.60960 1.43759 1.20547 1.05374 0.78472 0.73514 0.72719 1.93568 1.77461 1.72888 1.51665 1.93552 1.82696 1.36172 1.84490 1.30246 1.20427 1.11879 1.08690 1.18832 0.97602 0.94589 0.90611 1.21504 0.91421 1.35618 1.09430 0.90849 1.26123 1.04981 0.94332 0.94722 1.70101 1.37951 1.36425 1.12742 0.85236 0.77869 0.78203 0.78771 1.18103 1.19819 1.20444 0.88236 0.88005 0.92609 0.88884 0.93346 0.91575 0.91620 0.90165 0.90493 0.93061 0.90213 0.90792 0.90884 0.93086 0.70752 0.85164 0.82795 0.96408 0.97823 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.42 71.98 0.68 -1.26 16 2 C 0.07 1.24 2.93 29.85 0.09 1.33 16 3 H 0.14 1.21 7.62 -2.39 -0.02 1.19 16 4 O -0.38 -8.48 9.17 -129.94 -1.19 -9.67 16 5 C 0.08 1.25 2.40 30.60 0.07 1.33 16 6 C -0.15 -2.33 5.53 30.60 0.17 -2.16 16 7 C -0.11 -1.22 5.92 30.59 0.18 -1.04 16 8 C -0.13 -1.31 5.92 30.59 0.18 -1.12 16 9 C -0.11 -1.04 5.92 30.58 0.18 -0.85 16 10 C -0.12 -1.67 5.57 30.58 0.17 -1.50 16 11 C 0.53 14.18 6.97 87.66 0.61 14.79 16 12 O -0.52 -19.88 14.60 24.22 0.35 -19.53 16 13 N -1.03 -24.43 5.50 -173.52 -0.95 -25.38 16 14 S 2.60 95.35 5.11 -56.49 -0.29 95.06 16 15 O -0.97 -37.37 18.08 -127.65 -2.31 -39.68 16 16 O -0.98 -44.93 17.04 -120.71 -2.06 -46.99 16 17 C -0.58 -23.53 5.82 71.98 0.42 -23.11 16 18 C 0.02 1.23 4.98 29.85 0.15 1.38 16 19 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 20 H 0.07 3.93 7.74 -2.92 -0.02 3.91 16 21 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 22 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 23 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.10 0.61 7.56 -2.39 -0.02 0.60 16 28 H 0.10 0.62 7.96 -2.39 -0.02 0.60 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.09 0.81 7.62 -2.39 -0.02 0.79 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.98 7.96 -2.39 -0.02 0.96 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.45 5.80 8.21 -96.75 -0.79 5.00 16 42 H 0.13 5.34 7.19 -2.39 -0.02 5.32 16 43 H 0.15 5.09 8.14 -2.39 -0.02 5.07 16 44 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -86.18 385.63 -0.37 -86.55 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.17 Total: 13.40 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.60 Total: -42.72 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -0.67 Total: -82.76 kcal Atomic # 8 Polarization: -110.67 SS G_CDS: -5.20 Total: -115.87 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 95.35 SS G_CDS: -0.29 Total: 95.06 kcal Total: -86.18 -0.37 -86.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320639591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.798 kcal (2) G-P(sol) polarization free energy of solvation -86.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds