Wall clock time and date at job start Tue Mar 31 2020 18:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00051 * 2 1 4 4 N 1.46503 * 109.47293 * 239.99911 * 3 2 1 5 5 C 1.36746 * 127.13373 * 263.99609 * 4 3 2 6 6 C 1.50703 * 126.34666 * 359.96117 * 5 4 3 7 7 C 1.50700 * 109.46810 * 89.99904 * 6 5 4 8 8 C 1.33650 * 122.74339 * 124.73105 * 7 6 5 9 9 S 1.76198 * 107.91880 * 179.97438 * 8 7 6 10 10 C 1.70975 * 90.28619 * 0.27770 * 9 8 7 11 11 N 1.29025 * 110.16629 * 359.83580 * 10 9 8 12 12 N 1.30290 * 107.30068 * 179.83094 * 5 4 3 13 13 N 1.28525 * 110.05712 * 0.44362 * 12 5 4 14 14 C 1.31218 * 109.85978 * 359.71608 * 13 12 5 15 15 N 1.38583 * 126.47527 * 179.97438 * 14 13 12 16 16 C 1.46901 * 110.99815 * 293.06832 * 15 14 13 17 17 C 1.46899 * 110.99546 * 57.02085 * 15 14 13 18 18 H 1.09005 * 109.47316 * 299.99629 * 17 15 14 19 19 C 1.53000 * 109.47539 * 60.00230 * 17 15 14 20 20 C 1.50702 * 109.46954 * 180.02562 * 17 15 14 21 21 H 1.08003 * 119.99985 * 359.97438 * 20 17 15 22 22 C 1.37878 * 120.00188 * 179.97438 * 20 17 15 23 23 N 1.31511 * 120.00033 * 359.97438 * 22 20 17 24 24 Si 1.86804 * 119.99869 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47195 * 89.99827 * 24 22 20 26 26 H 1.48498 * 109.47044 * 210.00138 * 24 22 20 27 27 H 1.48503 * 109.47174 * 329.99604 * 24 22 20 28 28 H 1.08005 * 120.00100 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00574 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47026 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47151 * 119.99724 * 3 2 1 33 33 H 1.08996 * 109.46753 * 210.00003 * 6 5 4 34 34 H 1.08996 * 109.47131 * 330.00221 * 6 5 4 35 35 H 1.07992 * 126.03642 * 0.03956 * 8 7 6 36 36 H 1.08001 * 124.91747 * 179.83554 * 10 9 8 37 37 H 1.08996 * 109.47323 * 66.15719 * 16 15 14 38 38 H 1.08995 * 109.46764 * 186.16073 * 16 15 14 39 39 H 1.08999 * 109.46891 * 306.15579 * 16 15 14 40 40 H 1.09000 * 109.46905 * 179.97438 * 19 17 15 41 41 H 1.08999 * 109.46775 * 299.99952 * 19 17 15 42 42 H 1.08997 * 109.46646 * 59.99883 * 19 17 15 43 43 H 0.96996 * 120.00098 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9058 1.3828 -1.1962 5 6 4.2308 1.0596 -1.2951 6 6 5.1118 0.5515 -0.1830 7 6 5.0547 -0.9540 -0.1450 8 6 6.1470 -1.7208 -0.2159 9 16 5.6334 -3.4044 -0.1365 10 6 4.0006 -2.9100 -0.0241 11 7 3.9233 -1.6223 -0.0456 12 7 4.5898 1.2699 -2.5299 13 7 3.5918 1.7093 -3.2102 14 6 2.5324 1.7980 -2.4411 15 7 1.2724 2.2320 -2.8213 16 6 1.2892 3.6599 -3.1660 17 6 0.7524 1.4276 -3.9351 18 1 1.4240 1.5129 -4.7894 19 6 0.6575 -0.0378 -3.5052 20 6 -0.6158 1.9281 -4.3204 21 1 -1.0554 2.7603 -3.7905 22 6 -1.3065 1.3237 -5.3493 23 7 -0.7712 0.3107 -5.9948 24 14 -3.0029 1.9438 -5.8263 25 1 -2.8709 2.9969 -6.8650 26 1 -3.8088 0.8177 -6.3626 27 1 -3.6774 2.5098 -4.6305 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3552 2.1336 0.0005 32 1 2.6901 1.3629 0.8900 33 1 6.1388 0.8719 -0.3578 34 1 4.7631 0.9524 0.7687 35 1 7.1646 -1.3704 -0.3049 36 1 3.1561 -3.5788 0.0536 37 1 1.8942 3.8107 -4.0600 38 1 0.2711 4.0001 -3.3546 39 1 1.7149 4.2282 -2.3391 40 1 0.2713 -0.6345 -4.3316 41 1 1.6473 -0.3995 -3.2269 42 1 -0.0140 -0.1230 -2.6510 43 1 -1.2569 -0.1142 -6.7189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338893005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:28 Heat of formation + Delta-G solvation = 169.361738 kcal Electronic energy + Delta-G solvation = -27266.412064 eV Core-core repulsion = 23669.659507 eV Total energy + Delta-G solvation = -3596.752557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.42553 -39.93084 -36.94522 -35.68915 -33.26389 -32.78092 -31.97392 -29.77206 -29.14832 -27.27433 -26.41915 -25.39111 -24.90223 -24.22890 -21.67730 -21.01993 -19.85639 -19.62777 -19.28965 -18.04426 -16.74275 -16.16579 -16.07445 -15.85676 -15.17761 -14.97778 -14.59435 -14.52984 -13.98945 -13.60725 -13.54701 -13.37162 -13.17483 -12.88210 -12.71658 -12.26782 -12.03115 -11.80033 -11.56630 -11.16316 -11.09630 -11.01825 -10.87859 -10.76563 -10.29763 -10.19243 -10.06273 -9.95213 -9.76674 -9.62074 -9.53286 -9.10546 -9.02868 -9.01013 -8.47789 -8.33096 -7.61557 -6.02882 -4.09220 0.56118 1.22792 1.54144 2.17006 2.45913 2.63597 3.14918 3.29636 3.36235 3.38782 3.43375 4.02036 4.37070 4.53323 4.77979 4.85947 4.89324 5.02360 5.10143 5.14836 5.29292 5.31222 5.44701 5.46539 5.80054 5.84360 5.96959 6.03564 6.22031 6.26831 6.39193 6.55553 6.64977 6.88139 6.97832 6.99563 7.05465 7.09106 7.27744 7.47961 7.55816 7.73828 7.80863 8.01814 8.25196 8.53712 8.94334 9.34916 9.55189 11.03955 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003667 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.295755 B = 7634.414205 C = 8037.011170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.180 4.180 3 C 0.153 3.847 4 N -0.454 5.454 5 C 0.161 3.839 6 C 0.052 3.948 7 C 0.072 3.928 8 C -0.243 4.243 9 S 0.115 5.885 10 C 0.026 3.974 11 N -0.457 5.457 12 N -0.288 5.288 13 N -0.322 5.322 14 C 0.388 3.612 15 N -0.470 5.470 16 C 0.050 3.950 17 C 0.228 3.772 18 H 0.018 0.982 19 C -0.125 4.125 20 C -0.509 4.509 21 H 0.065 0.935 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.034 0.966 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.000 1.000 42 H 0.036 0.964 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 -4.598 17.440 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.199 4.199 3 C 0.030 3.970 4 N -0.147 5.147 5 C -0.107 4.107 6 C 0.009 3.991 7 C -0.061 4.061 8 C -0.383 4.383 9 S 0.367 5.633 10 C -0.273 4.273 11 N -0.170 5.170 12 N -0.130 5.130 13 N -0.166 5.166 14 C 0.032 3.968 15 N -0.198 5.198 16 C -0.098 4.098 17 C 0.124 3.876 18 H 0.036 0.964 19 C -0.183 4.183 20 C -0.548 4.548 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.197 0.803 36 H 0.215 0.785 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.047 -5.439 16.469 20.563 hybrid contribution -1.395 0.939 0.034 1.682 sum 9.652 -4.500 16.503 19.641 Atomic orbital electron populations 1.23841 0.95725 1.01948 0.97548 1.23238 0.96097 0.98515 1.02040 1.20730 0.93408 0.98115 0.84739 1.46296 1.09263 1.48598 1.10496 1.23964 0.83442 1.06357 0.96949 1.18371 0.99116 0.87178 0.94385 1.20013 0.86863 0.97076 1.02112 1.26818 1.04314 0.94805 1.12323 1.84010 1.04040 1.08090 1.67169 1.28396 1.00604 0.94539 1.03720 1.66000 1.29756 1.06225 1.14997 1.73907 1.23005 1.15699 1.00359 1.74682 0.96698 1.20041 1.25134 1.22768 0.93306 0.98549 0.82153 1.59253 1.12243 1.04864 1.43400 1.22194 1.03098 0.86019 0.98441 1.19377 0.94750 0.89181 0.84316 0.96425 1.21764 0.96594 0.98555 1.01411 1.21054 1.00642 1.16595 1.16477 0.91664 1.24902 0.98101 0.94905 0.96016 1.69913 1.37960 1.22306 1.22441 0.86490 0.83822 0.78332 0.78713 1.20665 1.21261 1.19820 0.88371 0.88537 0.84973 0.88776 0.89499 0.86958 0.88619 0.80269 0.78464 0.94766 0.89335 0.93978 0.89552 0.98118 0.94451 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 13.25 29.02 0.38 -1.85 16 2 C -0.18 -2.67 9.83 -36.02 -0.35 -3.03 16 3 C 0.15 2.19 6.51 -5.19 -0.03 2.15 16 4 N -0.45 -8.08 2.79 -115.36 -0.32 -8.40 16 5 C 0.16 2.74 7.20 -154.01 -1.11 1.63 16 6 C 0.05 0.60 6.07 -29.03 -0.18 0.43 16 7 C 0.07 0.86 6.07 -84.22 -0.51 0.35 16 8 C -0.24 -2.38 11.07 29.12 0.32 -2.06 16 9 S 0.11 1.00 23.22 -107.50 -2.50 -1.50 16 10 C 0.03 0.27 12.23 51.58 0.63 0.90 16 11 N -0.46 -5.88 8.06 -11.90 -0.10 -5.98 16 12 N -0.29 -6.06 12.18 32.99 0.40 -5.66 16 13 N -0.32 -7.62 12.07 30.31 0.37 -7.25 16 14 C 0.39 8.40 5.05 -318.88 -1.61 6.79 16 15 N -0.47 -10.54 4.66 -176.08 -0.82 -11.36 16 16 C 0.05 1.02 9.14 60.07 0.55 1.57 16 17 C 0.23 5.97 1.98 -68.86 -0.14 5.84 16 18 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 19 C -0.13 -3.24 8.85 37.16 0.33 -2.91 16 20 C -0.51 -13.74 7.95 -34.44 -0.27 -14.02 16 21 H 0.07 1.71 6.40 -52.48 -0.34 1.37 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 24 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.10 1.44 7.83 -52.48 -0.41 1.03 16 29 H 0.10 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 2.02 5.59 -52.49 -0.29 1.73 16 31 H 0.09 1.34 7.78 -51.93 -0.40 0.94 16 32 H 0.09 0.97 7.09 -51.93 -0.37 0.61 16 33 H 0.11 1.06 8.03 -51.93 -0.42 0.64 16 34 H 0.10 0.89 7.17 -51.93 -0.37 0.51 16 35 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.77 6.32 -51.93 -0.33 1.44 16 39 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.00 -0.01 7.22 -51.93 -0.38 -0.38 16 42 H 0.04 0.92 7.04 -51.93 -0.37 0.55 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -33.84 369.00 -9.53 -43.38 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.65 Total: 2.70 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.08 Total: -2.57 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.16 Total: -63.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.84 -9.53 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338893005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.740 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds