Wall clock time and date at job start Tue Mar 31 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00051 * 2 1 4 4 N 1.46503 * 109.47293 * 239.99911 * 3 2 1 5 5 C 1.36746 * 127.13373 * 263.99609 * 4 3 2 6 6 C 1.50703 * 126.34666 * 359.96117 * 5 4 3 7 7 C 1.50700 * 109.46810 * 89.99904 * 6 5 4 8 8 C 1.33650 * 122.74339 * 124.73105 * 7 6 5 9 9 S 1.76198 * 107.91880 * 179.97438 * 8 7 6 10 10 C 1.70975 * 90.28619 * 0.27770 * 9 8 7 11 11 N 1.29025 * 110.16629 * 359.83580 * 10 9 8 12 12 N 1.30290 * 107.30068 * 179.83094 * 5 4 3 13 13 N 1.28525 * 110.05712 * 0.44362 * 12 5 4 14 14 C 1.31218 * 109.85978 * 359.71608 * 13 12 5 15 15 N 1.38583 * 126.47527 * 179.97438 * 14 13 12 16 16 C 1.46901 * 110.99815 * 293.06832 * 15 14 13 17 17 C 1.46899 * 110.99546 * 57.02085 * 15 14 13 18 18 H 1.09005 * 109.47316 * 299.99629 * 17 15 14 19 19 C 1.53000 * 109.47539 * 60.00230 * 17 15 14 20 20 C 1.50702 * 109.46954 * 180.02562 * 17 15 14 21 21 H 1.08003 * 119.99985 * 359.97438 * 20 17 15 22 22 C 1.37878 * 120.00188 * 179.97438 * 20 17 15 23 23 N 1.31511 * 120.00033 * 359.97438 * 22 20 17 24 24 Si 1.86804 * 119.99869 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47195 * 89.99827 * 24 22 20 26 26 H 1.48498 * 109.47044 * 210.00138 * 24 22 20 27 27 H 1.48503 * 109.47174 * 329.99604 * 24 22 20 28 28 H 1.08005 * 120.00100 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00574 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47026 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47151 * 119.99724 * 3 2 1 33 33 H 1.08996 * 109.46753 * 210.00003 * 6 5 4 34 34 H 1.08996 * 109.47131 * 330.00221 * 6 5 4 35 35 H 1.07992 * 126.03642 * 0.03956 * 8 7 6 36 36 H 1.08001 * 124.91747 * 179.83554 * 10 9 8 37 37 H 1.08996 * 109.47323 * 66.15719 * 16 15 14 38 38 H 1.08995 * 109.46764 * 186.16073 * 16 15 14 39 39 H 1.08999 * 109.46891 * 306.15579 * 16 15 14 40 40 H 1.09000 * 109.46905 * 179.97438 * 19 17 15 41 41 H 1.08999 * 109.46775 * 299.99952 * 19 17 15 42 42 H 1.08997 * 109.46646 * 59.99883 * 19 17 15 43 43 H 0.96996 * 120.00098 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9058 1.3828 -1.1962 5 6 4.2308 1.0596 -1.2951 6 6 5.1118 0.5515 -0.1830 7 6 5.0547 -0.9540 -0.1450 8 6 6.1470 -1.7208 -0.2159 9 16 5.6334 -3.4044 -0.1365 10 6 4.0006 -2.9100 -0.0241 11 7 3.9233 -1.6223 -0.0456 12 7 4.5898 1.2699 -2.5299 13 7 3.5918 1.7093 -3.2102 14 6 2.5324 1.7980 -2.4411 15 7 1.2724 2.2320 -2.8213 16 6 1.2892 3.6599 -3.1660 17 6 0.7524 1.4276 -3.9351 18 1 1.4240 1.5129 -4.7894 19 6 0.6575 -0.0378 -3.5052 20 6 -0.6158 1.9281 -4.3204 21 1 -1.0554 2.7603 -3.7905 22 6 -1.3065 1.3237 -5.3493 23 7 -0.7712 0.3107 -5.9948 24 14 -3.0029 1.9438 -5.8263 25 1 -2.8709 2.9969 -6.8650 26 1 -3.8088 0.8177 -6.3626 27 1 -3.6774 2.5098 -4.6305 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3552 2.1336 0.0005 32 1 2.6901 1.3629 0.8900 33 1 6.1388 0.8719 -0.3578 34 1 4.7631 0.9524 0.7687 35 1 7.1646 -1.3704 -0.3049 36 1 3.1561 -3.5788 0.0536 37 1 1.8942 3.8107 -4.0600 38 1 0.2711 4.0001 -3.3546 39 1 1.7149 4.2282 -2.3391 40 1 0.2713 -0.6345 -4.3316 41 1 1.6473 -0.3995 -3.2269 42 1 -0.0140 -0.1230 -2.6510 43 1 -1.2569 -0.1142 -6.7189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338893005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:27 Heat of formation + Delta-G solvation = 149.061586 kcal Electronic energy + Delta-G solvation = -27267.292345 eV Core-core repulsion = 23669.659507 eV Total energy + Delta-G solvation = -3597.632838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.92144 -40.74564 -38.76311 -36.97858 -34.97745 -34.13957 -33.26218 -31.37707 -30.72613 -28.56158 -27.65497 -27.24210 -26.10259 -25.72012 -23.49669 -22.33822 -21.27701 -20.71023 -20.50248 -18.90058 -18.50938 -17.83632 -17.56745 -16.88729 -16.60317 -16.45936 -16.10290 -15.68599 -15.47350 -15.06711 -14.72313 -14.59413 -14.18113 -14.17465 -14.08264 -13.69723 -13.59197 -13.17093 -13.01485 -12.79345 -12.71640 -12.52375 -12.42143 -12.28469 -12.21543 -12.16827 -12.04577 -11.53354 -11.07839 -10.95943 -10.58239 -10.50765 -10.36468 -10.30753 -9.95619 -9.73255 -9.48475 -8.13385 -6.27764 -0.19149 0.50863 0.70212 0.89324 1.15738 1.45261 1.45665 1.56661 1.70741 1.83923 1.96556 2.42753 3.07943 3.18931 3.23347 3.51218 3.77749 3.97149 4.05843 4.12834 4.19627 4.30171 4.43163 4.48695 4.53867 4.62728 4.67142 4.72769 4.78448 4.87515 4.90944 5.00303 5.01916 5.06409 5.16744 5.18396 5.40262 5.59697 5.65889 5.83369 5.86909 5.95395 6.02332 6.16350 6.67053 6.78547 6.83172 7.41365 7.81449 8.93929 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003667 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.295755 B = 7634.414205 C = 8037.011170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.184 4.184 3 C 0.147 3.853 4 N -0.449 5.449 5 C 0.189 3.811 6 C 0.052 3.948 7 C 0.045 3.955 8 C -0.242 4.242 9 S 0.160 5.840 10 C 0.007 3.993 11 N -0.489 5.489 12 N -0.329 5.329 13 N -0.367 5.367 14 C 0.367 3.633 15 N -0.461 5.461 16 C 0.053 3.947 17 C 0.240 3.760 18 H -0.036 1.036 19 C -0.099 4.099 20 C -0.519 4.519 21 H 0.075 0.925 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.968 3.032 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.259 1.259 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.205 0.795 36 H 0.215 0.785 37 H 0.012 0.988 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.059 0.941 41 H -0.012 1.012 42 H 0.047 0.953 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -4.572 19.842 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.203 4.203 3 C 0.026 3.974 4 N -0.140 5.140 5 C -0.080 4.080 6 C 0.010 3.990 7 C -0.087 4.087 8 C -0.382 4.382 9 S 0.413 5.587 10 C -0.291 4.291 11 N -0.204 5.204 12 N -0.169 5.169 13 N -0.211 5.211 14 C 0.009 3.991 15 N -0.188 5.188 16 C -0.094 4.094 17 C 0.134 3.866 18 H -0.018 1.018 19 C -0.157 4.157 20 C -0.558 4.558 21 H 0.093 0.907 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.793 3.207 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.183 1.183 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.147 0.853 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.222 0.778 36 H 0.231 0.769 37 H 0.031 0.969 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.007 0.993 42 H 0.066 0.934 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.132 -5.409 18.907 22.597 hybrid contribution -1.270 0.820 -0.640 1.642 sum 9.862 -4.588 18.267 21.260 Atomic orbital electron populations 1.23955 0.95849 1.02318 0.97381 1.23282 0.96187 0.98701 1.02111 1.21054 0.93876 0.97887 0.84569 1.46456 1.09822 1.47599 1.10115 1.24994 0.83414 1.02642 0.96944 1.18729 0.99348 0.87452 0.93490 1.20055 0.87433 0.97112 1.04149 1.27204 1.05109 0.95434 1.10410 1.83866 1.02263 1.06875 1.65720 1.28748 1.02354 0.94388 1.03573 1.65982 1.30748 1.07375 1.16251 1.73815 1.22888 1.17985 1.02206 1.74553 0.97989 1.21390 1.27139 1.22647 0.92659 1.00149 0.83609 1.59170 1.13050 1.05237 1.41300 1.22220 1.03031 0.85426 0.98764 1.19014 0.93699 0.89936 0.83909 1.01850 1.21458 0.95726 0.98111 1.00409 1.21328 1.00840 1.16831 1.16762 0.90740 1.25783 1.02055 0.94914 0.95849 1.70073 1.39620 1.23589 1.22938 0.85396 0.78898 0.77678 0.78703 1.20304 1.21167 1.18335 0.88368 0.87901 0.85256 0.88555 0.85734 0.84523 0.85753 0.77849 0.76888 0.96898 0.89082 0.90967 0.92263 0.99291 0.93435 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 13.25 67.78 0.90 -3.51 16 2 C -0.18 -5.21 9.83 25.65 0.25 -4.96 16 3 C 0.15 3.91 6.51 85.63 0.56 4.47 16 4 N -0.45 -15.53 2.79 -518.89 -1.45 -16.98 16 5 C 0.19 6.24 7.20 137.64 0.99 7.23 16 6 C 0.05 1.06 6.07 29.10 0.18 1.24 16 7 C 0.05 0.98 6.07 41.53 0.25 1.23 16 8 C -0.24 -4.10 11.07 66.78 0.74 -3.36 16 9 S 0.16 2.43 23.22 -56.49 -1.31 1.11 16 10 C 0.01 0.13 12.23 130.65 1.60 1.73 16 11 N -0.49 -11.85 8.06 -191.55 -1.54 -13.40 16 12 N -0.33 -13.95 12.18 -49.53 -0.60 -14.55 16 13 N -0.37 -17.94 12.07 -58.01 -0.70 -18.64 16 14 C 0.37 16.09 5.05 260.11 1.31 17.40 16 15 N -0.46 -20.94 4.66 -711.01 -3.31 -24.25 16 16 C 0.05 2.17 9.14 127.69 1.17 3.34 16 17 C 0.24 13.01 1.98 44.17 0.09 13.10 16 18 H -0.04 -2.32 8.05 -2.38 -0.02 -2.34 16 19 C -0.10 -5.28 8.85 71.98 0.64 -4.64 16 20 C -0.52 -28.35 7.95 25.60 0.20 -28.14 16 21 H 0.07 3.86 6.40 -2.91 -0.02 3.84 16 22 C 0.01 0.72 5.30 84.66 0.45 1.17 16 23 N -0.92 -54.64 11.32 21.45 0.24 -54.40 16 24 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H 0.10 2.75 7.83 -2.91 -0.02 2.72 16 29 H 0.10 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.13 3.81 5.59 -2.91 -0.02 3.79 16 31 H 0.10 2.55 7.78 -2.39 -0.02 2.53 16 32 H 0.12 2.36 7.09 -2.39 -0.02 2.34 16 33 H 0.14 2.13 8.03 -2.39 -0.02 2.12 16 34 H 0.12 1.82 7.17 -2.39 -0.02 1.81 16 35 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 3.62 6.32 -2.39 -0.02 3.61 16 39 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 40 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 41 H -0.01 -0.66 7.22 -2.39 -0.02 -0.68 16 42 H 0.05 2.37 7.04 -2.39 -0.02 2.35 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -76.47 369.00 3.70 -72.77 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.03 Total: 16.85 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 9.32 Total: 6.29 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -7.37 Total: -142.21 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.11 kcal Total: -76.47 3.70 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338893005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.828 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds