Wall clock time and date at job start Tue Mar 31 2020 18:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00004 * 2 1 4 4 N 1.46508 * 109.46719 * 123.55202 * 3 2 1 5 5 C 1.36735 * 127.13352 * 88.80640 * 4 3 2 6 6 C 1.50703 * 126.35094 * 0.02562 * 5 4 3 7 7 C 1.50703 * 109.47477 * 89.99574 * 6 5 4 8 8 N 1.29028 * 124.91207 * 89.96049 * 7 6 5 9 9 C 1.31783 * 117.12299 * 179.75541 * 8 7 6 10 10 C 1.33642 * 114.49719 * 0.52033 * 9 8 7 11 11 S 1.70969 * 124.91901 * 270.00669 * 7 6 5 12 12 N 1.30298 * 107.30639 * 180.25778 * 5 4 3 13 13 N 1.28528 * 110.04774 * 359.56361 * 12 5 4 14 14 C 1.31211 * 109.86179 * 0.45019 * 13 12 5 15 15 N 1.38587 * 126.47191 * 179.73552 * 14 13 12 16 16 C 1.46896 * 110.99913 * 306.12096 * 15 14 13 17 17 C 1.46900 * 111.00215 * 70.07726 * 15 14 13 18 18 H 1.08999 * 109.47518 * 54.99884 * 17 15 14 19 19 C 1.53004 * 109.46872 * 295.00158 * 17 15 14 20 20 C 1.50697 * 109.47266 * 175.00335 * 17 15 14 21 21 H 1.08007 * 119.99877 * 359.97438 * 20 17 15 22 22 C 1.37869 * 120.00367 * 180.02562 * 20 17 15 23 23 N 1.31523 * 119.99647 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00231 * 179.97438 * 22 20 17 25 25 H 1.48490 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47462 * 119.99891 * 24 22 20 27 27 H 1.48498 * 109.46897 * 239.99676 * 24 22 20 28 28 H 1.07997 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00298 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00128 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47127 * 3.55716 * 3 2 1 32 32 H 1.08991 * 109.47640 * 243.55001 * 3 2 1 33 33 H 1.09005 * 109.46720 * 329.99785 * 6 5 4 34 34 H 1.09000 * 109.47299 * 209.99977 * 6 5 4 35 35 H 1.07993 * 122.75178 * 180.33788 * 9 8 7 36 36 H 1.08003 * 126.03657 * 179.79275 * 10 9 8 37 37 H 1.09004 * 109.47338 * 54.34268 * 16 15 14 38 38 H 1.08992 * 109.47559 * 174.34770 * 16 15 14 39 39 H 1.09007 * 109.46912 * 294.34720 * 16 15 14 40 40 H 1.08996 * 109.46962 * 180.02562 * 19 17 15 41 41 H 1.09001 * 109.47054 * 299.99671 * 19 17 15 42 42 H 1.08991 * 109.47298 * 59.99834 * 19 17 15 43 43 H 0.97003 * 119.99712 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9688 1.3463 1.1512 5 6 4.2583 0.8947 1.2037 6 6 5.0270 0.2538 0.0769 7 6 5.7476 1.3187 -0.7091 8 7 6.9423 1.7384 -0.4612 9 6 7.4264 2.6747 -1.2520 10 6 6.5896 3.0745 -2.2143 11 16 5.1001 2.1465 -2.0577 12 7 4.6979 1.1165 2.4101 13 7 3.7838 1.6815 3.1151 14 6 2.7001 1.8431 2.3932 15 7 1.5077 2.4113 2.8130 16 6 1.0089 1.7516 4.0270 17 6 1.6590 3.8572 3.0238 18 1 2.0471 4.3182 2.1155 19 6 2.6325 4.1052 4.1777 20 6 0.3187 4.4588 3.3592 21 1 -0.5580 3.8300 3.4103 22 6 0.2112 5.8121 3.5999 23 7 1.2787 6.5779 3.5372 24 14 -1.4503 6.5580 4.0150 25 1 -2.4837 5.4917 4.0218 26 1 -1.3863 7.1945 5.3551 27 1 -1.8018 7.5809 2.9975 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3569 2.1326 0.0638 32 1 2.6415 1.3910 -0.9200 33 1 4.3361 -0.2766 -0.5785 34 1 5.7524 -0.4495 0.4858 35 1 8.4170 3.0874 -1.1306 36 1 6.7924 3.8296 -2.9594 37 1 1.7842 1.7660 4.7931 38 1 0.1279 2.2796 4.3917 39 1 0.7446 0.7193 3.7971 40 1 2.7444 5.1780 4.3344 41 1 2.2444 3.6443 5.0860 42 1 3.6019 3.6700 3.9352 43 1 1.2032 7.5300 3.7069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339519963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:31 Heat of formation + Delta-G solvation = 170.085782 kcal Electronic energy + Delta-G solvation = -26819.978030 eV Core-core repulsion = 23223.256870 eV Total energy + Delta-G solvation = -3596.721160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56839 -39.73642 -37.25001 -36.04358 -33.59444 -32.84039 -32.28269 -29.74726 -28.75877 -27.53282 -26.68993 -25.24967 -25.19173 -24.26315 -21.56375 -21.13719 -20.13146 -19.93647 -19.46408 -18.17111 -16.74802 -16.39912 -15.98982 -15.64595 -15.51074 -15.33543 -14.71733 -14.56796 -14.12756 -13.80142 -13.77515 -13.49378 -13.22708 -12.95017 -12.41985 -12.34775 -12.27767 -11.67081 -11.56461 -11.52007 -11.27705 -11.17751 -10.95260 -10.79373 -10.56164 -10.19768 -10.15869 -9.95059 -9.79525 -9.75183 -9.62115 -9.54457 -9.08987 -8.91122 -8.51642 -8.45866 -7.71149 -6.09421 -4.15949 0.51167 1.17011 1.55275 1.91486 2.13370 2.69600 2.87693 3.24752 3.28999 3.33260 3.36499 3.98319 4.31380 4.42719 4.60277 4.70492 4.75432 4.88258 4.97116 5.03678 5.08335 5.22681 5.33062 5.39945 5.56371 5.74140 5.78559 5.93122 5.98686 6.13370 6.38133 6.39243 6.43791 6.60111 6.61886 6.83398 6.99333 7.06600 7.16567 7.51025 7.61022 7.63839 7.73787 7.90475 8.24372 8.44529 8.87703 9.22865 9.49050 10.97324 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003878 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.546599 B = 7218.602261 C = 7808.016605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.186 4.186 3 C 0.141 3.859 4 N -0.463 5.463 5 C 0.150 3.850 6 C 0.054 3.946 7 C 0.053 3.947 8 N -0.455 5.455 9 C 0.041 3.959 10 C -0.255 4.255 11 S 0.116 5.884 12 N -0.270 5.270 13 N -0.313 5.313 14 C 0.387 3.613 15 N -0.469 5.469 16 C 0.046 3.954 17 C 0.224 3.776 18 H 0.035 0.965 19 C -0.173 4.173 20 C -0.507 4.507 21 H 0.067 0.933 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.900 3.100 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -12.049 -14.056 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.205 4.205 3 C 0.019 3.981 4 N -0.156 5.156 5 C -0.118 4.118 6 C 0.010 3.990 7 C -0.226 4.226 8 N -0.169 5.169 9 C -0.111 4.111 10 C -0.395 4.395 11 S 0.369 5.631 12 N -0.111 5.111 13 N -0.157 5.157 14 C 0.032 3.968 15 N -0.195 5.195 16 C -0.101 4.101 17 C 0.120 3.880 18 H 0.052 0.948 19 C -0.232 4.232 20 C -0.545 4.545 21 H 0.085 0.915 22 C -0.140 4.140 23 N -0.526 5.526 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.195 0.805 36 H 0.196 0.804 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.152 -12.128 -13.321 18.487 hybrid contribution -0.278 1.220 -0.259 1.278 sum 3.873 -10.908 -13.580 17.843 Atomic orbital electron populations 1.24003 0.95580 1.02693 0.96136 1.22959 0.96477 0.97364 1.03678 1.20887 0.92678 0.98382 0.86195 1.46334 1.11694 1.45744 1.11866 1.23893 0.83859 1.06534 0.97483 1.18355 0.97019 0.92722 0.90863 1.26775 0.94275 1.02698 0.98833 1.66227 1.11293 1.12560 1.26831 1.21862 1.01826 0.95405 0.91958 1.27121 0.96608 1.08351 1.07375 1.83938 1.18464 1.32443 1.28209 1.73995 1.23290 1.13485 1.00351 1.74808 0.97792 1.17620 1.25492 1.22928 0.93750 0.97332 0.82818 1.59419 1.18120 1.07487 1.34496 1.22234 1.01015 0.97004 0.89877 1.19403 0.96400 0.77213 0.94993 0.94757 1.22437 0.97717 1.04145 0.98929 1.21031 0.92917 0.92738 1.47854 0.91506 1.24917 0.96840 0.97005 0.95244 1.69931 1.28096 1.05426 1.49194 0.86411 0.83688 0.79161 0.77974 1.19627 1.20994 1.21053 0.87421 0.87987 0.87140 0.86995 0.89534 0.88022 0.85452 0.80530 0.80419 0.94152 0.89095 0.93736 0.89594 0.94910 0.94810 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 14.32 29.02 0.42 -1.08 16 2 C -0.19 -2.03 9.85 -36.02 -0.35 -2.39 16 3 C 0.14 1.85 6.32 -5.19 -0.03 1.82 16 4 N -0.46 -7.83 2.79 -115.36 -0.32 -8.16 16 5 C 0.15 2.50 7.30 -154.01 -1.12 1.38 16 6 C 0.05 0.64 6.03 -29.03 -0.18 0.46 16 7 C 0.05 0.69 6.62 -13.45 -0.09 0.60 16 8 N -0.46 -6.53 10.54 -11.86 -0.13 -6.65 16 9 C 0.04 0.48 11.35 -19.18 -0.22 0.26 16 10 C -0.26 -2.61 11.37 29.12 0.33 -2.28 16 11 S 0.12 1.24 22.35 -107.50 -2.40 -1.17 16 12 N -0.27 -5.58 12.18 32.99 0.40 -5.18 16 13 N -0.31 -7.04 9.70 30.31 0.29 -6.75 16 14 C 0.39 8.04 6.21 -318.88 -1.98 6.06 16 15 N -0.47 -10.08 4.77 -176.08 -0.84 -10.92 16 16 C 0.05 0.92 8.66 60.06 0.52 1.44 16 17 C 0.22 5.64 2.32 -68.86 -0.16 5.48 16 18 H 0.03 0.97 8.11 -51.93 -0.42 0.55 16 19 C -0.17 -4.46 8.20 37.16 0.30 -4.16 16 20 C -0.51 -13.25 7.80 -34.44 -0.27 -13.52 16 21 H 0.07 1.71 6.82 -52.48 -0.36 1.35 16 22 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 23 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 24 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 H 0.11 1.16 7.84 -52.49 -0.41 0.75 16 29 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.11 1.63 7.79 -51.93 -0.40 1.22 16 32 H 0.09 0.93 7.10 -51.93 -0.37 0.56 16 33 H 0.10 0.85 7.97 -51.93 -0.41 0.44 16 34 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 38 H 0.09 1.83 6.29 -51.93 -0.33 1.50 16 39 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.03 0.81 6.61 -51.93 -0.34 0.47 16 42 H 0.03 0.87 5.93 -51.93 -0.31 0.56 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -32.75 370.06 -10.42 -43.17 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.68 Total: 3.25 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.93 Total: -4.36 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.04 Total: -62.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.40 Total: -1.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.75 -10.42 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339519963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.252 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds