Wall clock time and date at job start Tue Mar 31 2020 18:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00004 * 2 1 4 4 N 1.46508 * 109.46719 * 123.55202 * 3 2 1 5 5 C 1.36735 * 127.13352 * 88.80640 * 4 3 2 6 6 C 1.50703 * 126.35094 * 0.02562 * 5 4 3 7 7 C 1.50703 * 109.47477 * 89.99574 * 6 5 4 8 8 N 1.29028 * 124.91207 * 89.96049 * 7 6 5 9 9 C 1.31783 * 117.12299 * 179.75541 * 8 7 6 10 10 C 1.33642 * 114.49719 * 0.52033 * 9 8 7 11 11 S 1.70969 * 124.91901 * 270.00669 * 7 6 5 12 12 N 1.30298 * 107.30639 * 180.25778 * 5 4 3 13 13 N 1.28528 * 110.04774 * 359.56361 * 12 5 4 14 14 C 1.31211 * 109.86179 * 0.45019 * 13 12 5 15 15 N 1.38587 * 126.47191 * 179.73552 * 14 13 12 16 16 C 1.46896 * 110.99913 * 306.12096 * 15 14 13 17 17 C 1.46900 * 111.00215 * 70.07726 * 15 14 13 18 18 H 1.08999 * 109.47518 * 54.99884 * 17 15 14 19 19 C 1.53004 * 109.46872 * 295.00158 * 17 15 14 20 20 C 1.50697 * 109.47266 * 175.00335 * 17 15 14 21 21 H 1.08007 * 119.99877 * 359.97438 * 20 17 15 22 22 C 1.37869 * 120.00367 * 180.02562 * 20 17 15 23 23 N 1.31523 * 119.99647 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00231 * 179.97438 * 22 20 17 25 25 H 1.48490 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47462 * 119.99891 * 24 22 20 27 27 H 1.48498 * 109.46897 * 239.99676 * 24 22 20 28 28 H 1.07997 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00298 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00128 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47127 * 3.55716 * 3 2 1 32 32 H 1.08991 * 109.47640 * 243.55001 * 3 2 1 33 33 H 1.09005 * 109.46720 * 329.99785 * 6 5 4 34 34 H 1.09000 * 109.47299 * 209.99977 * 6 5 4 35 35 H 1.07993 * 122.75178 * 180.33788 * 9 8 7 36 36 H 1.08003 * 126.03657 * 179.79275 * 10 9 8 37 37 H 1.09004 * 109.47338 * 54.34268 * 16 15 14 38 38 H 1.08992 * 109.47559 * 174.34770 * 16 15 14 39 39 H 1.09007 * 109.46912 * 294.34720 * 16 15 14 40 40 H 1.08996 * 109.46962 * 180.02562 * 19 17 15 41 41 H 1.09001 * 109.47054 * 299.99671 * 19 17 15 42 42 H 1.08991 * 109.47298 * 59.99834 * 19 17 15 43 43 H 0.97003 * 119.99712 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9688 1.3463 1.1512 5 6 4.2583 0.8947 1.2037 6 6 5.0270 0.2538 0.0769 7 6 5.7476 1.3187 -0.7091 8 7 6.9423 1.7384 -0.4612 9 6 7.4264 2.6747 -1.2520 10 6 6.5896 3.0745 -2.2143 11 16 5.1001 2.1465 -2.0577 12 7 4.6979 1.1165 2.4101 13 7 3.7838 1.6815 3.1151 14 6 2.7001 1.8431 2.3932 15 7 1.5077 2.4113 2.8130 16 6 1.0089 1.7516 4.0270 17 6 1.6590 3.8572 3.0238 18 1 2.0471 4.3182 2.1155 19 6 2.6325 4.1052 4.1777 20 6 0.3187 4.4588 3.3592 21 1 -0.5580 3.8300 3.4103 22 6 0.2112 5.8121 3.5999 23 7 1.2787 6.5779 3.5372 24 14 -1.4503 6.5580 4.0150 25 1 -2.4837 5.4917 4.0218 26 1 -1.3863 7.1945 5.3551 27 1 -1.8018 7.5809 2.9975 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3569 2.1326 0.0638 32 1 2.6415 1.3910 -0.9200 33 1 4.3361 -0.2766 -0.5785 34 1 5.7524 -0.4495 0.4858 35 1 8.4170 3.0874 -1.1306 36 1 6.7924 3.8296 -2.9594 37 1 1.7842 1.7660 4.7931 38 1 0.1279 2.2796 4.3917 39 1 0.7446 0.7193 3.7971 40 1 2.7444 5.1780 4.3344 41 1 2.2444 3.6443 5.0860 42 1 3.6019 3.6700 3.9352 43 1 1.2032 7.5300 3.7069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339519963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:30 Heat of formation + Delta-G solvation = 151.424507 kcal Electronic energy + Delta-G solvation = -26820.787244 eV Core-core repulsion = 23223.256870 eV Total energy + Delta-G solvation = -3597.530374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.02629 -40.65042 -39.02183 -37.18566 -35.02921 -34.37118 -33.47521 -31.16560 -30.43312 -28.80932 -27.81775 -27.25804 -26.87548 -25.25116 -23.29749 -22.34808 -21.31783 -21.03444 -20.74884 -19.09755 -18.40936 -17.97382 -17.48493 -17.09804 -16.64017 -16.42704 -16.31604 -15.76878 -15.38730 -15.12018 -14.84517 -14.75918 -14.48743 -14.27566 -14.12513 -13.43245 -13.40774 -13.25875 -13.09722 -12.94468 -12.73764 -12.60529 -12.52180 -12.48657 -12.34048 -12.08928 -12.02669 -11.54970 -11.09263 -10.90670 -10.73492 -10.54988 -10.50837 -10.42794 -10.08894 -9.89601 -9.46279 -8.14605 -6.28349 -0.38352 0.31314 0.66896 0.71596 0.96854 1.44486 1.46461 1.58163 1.64905 1.73981 1.88564 2.42234 3.03766 3.11574 3.16569 3.31517 3.57766 3.83817 3.94209 4.09156 4.15963 4.18192 4.34180 4.42192 4.49290 4.55568 4.60203 4.65022 4.73131 4.80063 4.92553 5.00998 5.02236 5.09255 5.09928 5.14266 5.38470 5.59935 5.60631 5.63334 5.74721 5.82866 5.98997 6.19204 6.61678 6.72894 6.81983 7.41101 7.73335 8.92676 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003878 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.546599 B = 7218.602261 C = 7808.016605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.194 4.194 3 C 0.135 3.865 4 N -0.456 5.456 5 C 0.178 3.822 6 C 0.053 3.947 7 C 0.027 3.973 8 N -0.490 5.490 9 C 0.016 3.984 10 C -0.247 4.247 11 S 0.148 5.852 12 N -0.315 5.315 13 N -0.348 5.348 14 C 0.363 3.637 15 N -0.460 5.460 16 C 0.052 3.948 17 C 0.237 3.763 18 H -0.004 1.004 19 C -0.155 4.155 20 C -0.513 4.513 21 H 0.074 0.926 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.968 3.032 25 H -0.258 1.258 26 H -0.285 1.285 27 H -0.282 1.282 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.195 0.805 36 H 0.209 0.791 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.025 0.975 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -13.311 -16.059 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.212 4.212 3 C 0.014 3.986 4 N -0.148 5.148 5 C -0.091 4.091 6 C 0.011 3.989 7 C -0.251 4.251 8 N -0.205 5.205 9 C -0.134 4.134 10 C -0.386 4.386 11 S 0.402 5.598 12 N -0.155 5.155 13 N -0.191 5.191 14 C 0.006 3.994 15 N -0.186 5.186 16 C -0.096 4.096 17 C 0.131 3.869 18 H 0.014 0.986 19 C -0.214 4.214 20 C -0.552 4.552 21 H 0.092 0.908 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.793 3.207 25 H -0.182 1.182 26 H -0.211 1.211 27 H -0.208 1.208 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.212 0.788 36 H 0.226 0.774 37 H 0.043 0.957 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.763 -13.424 -15.344 20.573 hybrid contribution 0.229 1.602 0.234 1.635 sum 2.992 -11.822 -15.109 19.416 Atomic orbital electron populations 1.24178 0.95458 1.03388 0.94595 1.22950 0.96661 0.96705 1.04926 1.21173 0.92444 0.99324 0.85625 1.46530 1.12190 1.44623 1.11484 1.24725 0.83410 1.03638 0.97366 1.18674 0.97571 0.92623 0.90047 1.26833 0.94484 1.03588 1.00218 1.66224 1.12425 1.13681 1.28161 1.22215 1.03106 0.95658 0.92441 1.27568 0.95888 1.08022 1.07111 1.83745 1.18109 1.31504 1.26487 1.73912 1.23670 1.15622 1.02321 1.74658 0.98700 1.18532 1.27250 1.22838 0.93334 0.98878 0.84327 1.59300 1.18705 1.05603 1.34983 1.22221 1.00138 0.98250 0.88959 1.19038 0.95686 0.79580 0.92624 0.98592 1.22234 0.97700 1.02078 0.99426 1.21279 0.93330 0.93100 1.47461 0.90773 1.25767 1.00330 0.97486 0.95022 1.70078 1.30337 1.05650 1.50171 0.85347 0.79527 0.78417 0.77392 1.18175 1.21073 1.20810 0.88443 0.85612 0.85178 0.88831 0.87045 0.83884 0.84609 0.78846 0.77425 0.95674 0.89417 0.91085 0.92201 0.94786 0.95618 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 14.32 67.79 0.97 -1.49 16 2 C -0.19 -3.71 9.85 25.65 0.25 -3.46 16 3 C 0.14 3.34 6.32 85.63 0.54 3.88 16 4 N -0.46 -15.14 2.79 -518.90 -1.45 -16.58 16 5 C 0.18 5.80 7.30 137.64 1.01 6.81 16 6 C 0.05 1.17 6.03 29.10 0.18 1.35 16 7 C 0.03 0.66 6.62 88.52 0.59 1.24 16 8 N -0.49 -13.73 10.54 -191.45 -2.02 -15.75 16 9 C 0.02 0.36 11.35 83.66 0.95 1.31 16 10 C -0.25 -4.51 11.37 66.78 0.76 -3.75 16 11 S 0.15 2.82 22.35 -56.49 -1.26 1.56 16 12 N -0.32 -13.22 12.18 -49.54 -0.60 -13.82 16 13 N -0.35 -16.07 9.70 -58.01 -0.56 -16.63 16 14 C 0.36 15.28 6.21 260.11 1.62 16.90 16 15 N -0.46 -20.02 4.77 -711.01 -3.39 -23.42 16 16 C 0.05 2.04 8.66 127.69 1.11 3.15 16 17 C 0.24 12.27 2.32 44.17 0.10 12.37 16 18 H 0.00 -0.22 8.11 -2.39 -0.02 -0.24 16 19 C -0.15 -8.33 8.20 71.98 0.59 -7.74 16 20 C -0.51 -27.06 7.80 25.60 0.20 -26.86 16 21 H 0.07 3.74 6.82 -2.91 -0.02 3.72 16 22 C 0.01 0.69 5.30 84.65 0.45 1.14 16 23 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 24 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 H 0.10 1.94 7.84 -2.91 -0.02 1.92 16 29 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.09 2.68 7.79 -2.39 -0.02 2.67 16 32 H 0.11 2.12 7.10 -2.39 -0.02 2.11 16 33 H 0.14 1.88 7.97 -2.38 -0.02 1.86 16 34 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.02 1.05 6.56 -2.38 -0.02 1.04 16 38 H 0.09 3.49 6.29 -2.39 -0.02 3.48 16 39 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 41 H 0.03 1.75 6.61 -2.39 -0.02 1.73 16 42 H 0.02 1.38 5.93 -2.39 -0.01 1.37 16 43 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.70 370.06 3.31 -70.39 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.03 Total: 18.21 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 9.30 Total: 4.85 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -7.79 Total: -139.16 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.26 Total: 1.56 kcal Total: -73.70 3.31 -70.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339519963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.817 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds