Wall clock time and date at job start Tue Mar 31 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34797 * 116.99697 * 2 1 4 4 O 1.21534 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.46953 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.33086 * 120.00157 * 180.27632 * 5 3 2 7 7 C 1.50698 * 119.99845 * 179.72693 * 6 5 3 8 8 H 1.09000 * 109.47158 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46992 * 239.99849 * 7 6 5 10 10 N 1.46496 * 109.47134 * 119.99777 * 7 6 5 11 11 C 1.34774 * 119.99971 * 204.99625 * 10 7 6 12 12 O 1.21287 * 120.00234 * 359.97438 * 11 10 7 13 13 C 1.50703 * 120.00213 * 180.02562 * 11 10 7 14 14 C 1.50701 * 109.47095 * 180.02562 * 13 11 10 15 15 C 1.38299 * 119.92843 * 269.72259 * 14 13 11 16 16 C 1.38104 * 120.06708 * 179.72497 * 15 14 13 17 17 C 1.38879 * 119.93055 * 0.57613 * 16 15 14 18 18 O 1.35750 * 120.06954 * 179.67943 * 17 16 15 19 19 C 1.34830 * 116.99863 * 174.48683 * 18 17 16 20 20 H 1.08000 * 120.00226 * 5.05332 * 19 18 17 21 21 C 1.38650 * 119.99806 * 185.06004 * 19 18 17 22 22 N 1.31560 * 120.00322 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00263 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47293 * 90.00054 * 23 21 19 25 25 H 1.48500 * 109.47340 * 210.00167 * 23 21 19 26 26 H 1.48500 * 109.46815 * 330.00267 * 23 21 19 27 27 C 1.38878 * 119.85945 * 359.69818 * 17 16 15 28 28 C 1.38099 * 119.93364 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47024 * 300.00268 * 1 2 3 31 31 H 1.08996 * 109.46803 * 60.00085 * 1 2 3 32 32 H 1.08002 * 120.00068 * 359.97438 * 5 3 2 33 33 H 1.07992 * 119.99724 * 359.72307 * 6 5 3 34 34 H 1.08999 * 109.47186 * 59.99481 * 9 7 6 35 35 H 1.08998 * 109.47075 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.46753 * 300.00369 * 9 7 6 37 37 H 0.97000 * 120.00331 * 24.99824 * 10 7 6 38 38 H 1.08995 * 109.47126 * 299.99997 * 13 11 10 39 39 H 1.09001 * 109.47077 * 60.00100 * 13 11 10 40 40 H 1.07996 * 119.96753 * 359.97438 * 15 14 13 41 41 H 1.07997 * 120.03501 * 180.27263 * 16 15 14 42 42 H 0.96990 * 120.00616 * 179.97438 * 22 21 19 43 43 H 1.08008 * 120.03259 * 179.97438 * 27 17 16 44 44 H 1.07999 * 119.96673 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5315 1.2780 0.0006 6 6 4.1357 2.4638 0.0061 7 6 5.6406 2.5426 0.0129 8 1 6.0572 1.5354 0.0128 9 6 6.1066 3.2866 1.2661 10 7 6.0974 3.2607 -1.1795 11 6 7.3348 3.0404 -1.6660 12 8 8.0704 2.2480 -1.1164 13 6 7.8049 3.7795 -2.8923 14 6 9.2118 3.3549 -3.2262 15 6 10.2856 4.0420 -2.6898 16 6 11.5760 3.6518 -2.9893 17 6 11.7949 2.5757 -3.8395 18 8 13.0623 2.1938 -4.1409 19 6 13.2051 1.0742 -4.8785 20 1 12.3336 0.5708 -5.2703 21 6 14.4708 0.5691 -5.1339 22 7 14.6103 -0.5236 -5.8531 23 14 15.9782 1.4401 -4.4566 24 1 16.3030 0.8956 -3.1138 25 1 17.1282 1.2221 -5.3705 26 1 15.7017 2.8950 -4.3472 27 6 10.7145 1.8914 -4.3810 28 6 9.4265 2.2829 -4.0732 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.1198 0.3723 0.0014 33 1 3.5475 3.3695 0.0057 34 1 5.7667 2.7524 2.1533 35 1 7.1951 3.3440 1.2708 36 1 5.6900 4.2938 1.2667 37 1 5.5093 3.8947 -1.6189 38 1 7.1475 3.5481 -3.7303 39 1 7.7847 4.8522 -2.7001 40 1 10.1147 4.8819 -2.0329 41 1 12.4141 4.1859 -2.5666 42 1 15.4957 -0.8768 -6.0320 43 1 10.8816 1.0544 -5.0429 44 1 8.5859 1.7514 -4.4943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347559915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:57 Heat of formation + Delta-G solvation = -107.546520 kcal Electronic energy + Delta-G solvation = -26608.316188 eV Core-core repulsion = 22492.217614 eV Total energy + Delta-G solvation = -4116.098574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78283 -40.03072 -39.00476 -37.30132 -36.78824 -36.14610 -33.28819 -32.48388 -31.68349 -30.29105 -30.17174 -28.29298 -26.88514 -25.15495 -24.65717 -22.27324 -22.04789 -20.94337 -20.51466 -19.77516 -18.35244 -17.85983 -17.32118 -17.26180 -16.91491 -16.76072 -16.17640 -15.38164 -14.73582 -14.69258 -14.40646 -14.26768 -13.96554 -13.85479 -13.78088 -13.66447 -13.43142 -13.16917 -12.91700 -12.66029 -12.49279 -12.44290 -12.32453 -12.16802 -11.69543 -11.47912 -11.28061 -11.26417 -11.06077 -10.91747 -10.73770 -10.65078 -10.34416 -10.13139 -9.74623 -9.35671 -9.32506 -8.83197 -8.20699 -7.27992 -6.38731 -4.05108 0.50605 2.15273 2.18792 2.26637 2.43704 2.68729 3.17735 3.24557 3.28598 3.42589 4.07313 4.26392 4.43641 4.47531 4.58308 4.66462 4.73361 4.79330 4.86783 4.90475 5.00242 5.07058 5.13598 5.22164 5.24241 5.34629 5.47876 5.59405 5.62326 5.68236 5.75594 5.78136 5.88747 5.91825 6.16229 6.23983 6.35975 6.59473 6.82400 7.04783 7.24754 7.26528 7.33617 7.34795 7.64845 7.83552 8.07043 8.22559 8.96649 9.59388 10.68971 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.001820 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.930281 B =15378.833835 C =16025.360435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.496 3.504 4 O -0.512 6.512 5 C -0.177 4.177 6 C -0.059 4.059 7 C 0.164 3.836 8 H 0.101 0.899 9 C -0.162 4.162 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.516 6.516 13 C -0.081 4.081 14 C -0.162 4.162 15 C -0.062 4.062 16 C -0.191 4.191 17 C 0.162 3.838 18 O -0.218 6.218 19 C -0.389 4.389 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.219 4.219 28 C -0.058 4.058 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.133 0.867 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.604 7.025 11.545 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.342 3.658 4 O -0.402 6.402 5 C -0.196 4.196 6 C -0.078 4.078 7 C 0.060 3.940 8 H 0.118 0.882 9 C -0.220 4.220 10 N -0.390 5.390 11 C 0.299 3.701 12 O -0.389 6.389 13 C -0.121 4.121 14 C -0.164 4.164 15 C -0.080 4.080 16 C -0.210 4.210 17 C 0.110 3.890 18 O -0.123 6.123 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.239 4.239 28 C -0.076 4.076 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.877 6.638 11.892 28.362 hybrid contribution -0.004 0.378 -0.013 0.378 sum -24.881 7.015 11.879 28.450 Atomic orbital electron populations 1.23304 0.75874 1.03944 1.02657 1.86611 1.23722 1.32622 1.84086 1.21555 0.90096 0.81429 0.72696 1.90863 1.67266 1.36055 1.46012 1.22029 0.90025 1.00268 1.07315 1.23999 0.96197 0.98243 0.89392 1.20017 0.88878 0.98700 0.86415 0.88153 1.22159 1.03010 1.00518 0.96293 1.46133 1.16638 1.46150 1.30036 1.21072 0.80567 0.82672 0.85754 1.90761 1.53807 1.34640 1.59731 1.20430 0.96002 1.00348 0.95288 1.18690 0.92291 1.00731 1.04658 1.20398 0.91512 0.98355 0.97725 1.20150 0.96857 1.00252 1.03782 1.19124 0.84670 0.92927 0.92283 1.83570 1.22681 1.41906 1.64140 1.20773 0.96183 1.00492 1.28963 0.87621 1.24466 0.98194 0.95354 0.96019 1.69644 1.24846 1.20097 1.37227 0.86179 0.80750 0.81093 0.78860 1.19897 1.20816 1.18378 1.21228 0.92008 1.04253 1.06369 1.20567 0.96037 0.94800 0.96213 0.87847 0.91784 0.91734 0.83743 0.84749 0.91365 0.90854 0.92012 0.76572 0.88774 0.88765 0.87202 0.86560 0.91089 0.84963 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.97 10.58 -40.76 -0.43 -3.40 16 3 C 0.50 4.51 7.91 34.26 0.27 4.78 16 4 O -0.51 -5.77 16.01 -19.29 -0.31 -6.08 16 5 C -0.18 -1.28 9.76 -37.85 -0.37 -1.65 16 6 C -0.06 -0.39 8.54 -36.10 -0.31 -0.70 16 7 C 0.16 1.30 2.94 -69.08 -0.20 1.10 16 8 H 0.10 0.97 7.25 -51.93 -0.38 0.59 16 9 C -0.16 -1.21 9.47 37.16 0.35 -0.86 16 10 N -0.74 -6.09 5.07 -54.93 -0.28 -6.37 16 11 C 0.51 6.29 7.79 -10.98 -0.09 6.21 16 12 O -0.52 -8.88 15.70 5.55 0.09 -8.79 16 13 C -0.08 -0.91 5.83 -29.03 -0.17 -1.08 16 14 C -0.16 -2.66 4.38 -104.58 -0.46 -3.12 16 15 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 16 C -0.19 -3.88 9.99 -39.39 -0.39 -4.28 16 17 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 18 O -0.22 -5.87 8.59 0.05 0.00 -5.87 16 19 C -0.39 -11.13 9.95 30.88 0.31 -10.82 16 20 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.70 13.96 55.48 0.77 -24.92 16 23 Si 0.91 21.98 28.62 -169.99 -4.86 17.11 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.22 -4.85 9.17 -39.40 -0.36 -5.22 16 28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 0.89 7.87 -52.49 -0.41 0.48 16 33 H 0.13 0.83 7.49 -52.49 -0.39 0.44 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.14 8.59 -40.82 -0.35 1.79 16 38 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 42 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.13 3.06 5.64 -52.48 -0.30 2.77 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -35.12 387.40 -6.55 -41.67 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.89 Total: 2.81 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.47 Total: -12.00 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.50 Total: -31.29 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.65 Total: -24.14 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.12 -6.55 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347559915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.878 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds