Wall clock time and date at job start Tue Mar 31 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34798 * 117.00218 * 2 1 4 4 O 1.21536 * 119.99769 * 0.02562 * 3 2 1 5 5 C 1.46952 * 120.00434 * 180.02562 * 3 2 1 6 6 C 1.33080 * 119.99795 * 186.71523 * 5 3 2 7 7 C 1.50697 * 120.00473 * 17.56613 * 6 5 3 8 8 H 1.09004 * 109.46818 * 5.48641 * 7 6 5 9 9 C 1.53003 * 109.47451 * 245.48139 * 7 6 5 10 10 N 1.46503 * 109.46845 * 125.48143 * 7 6 5 11 11 C 1.34782 * 119.99834 * 205.00424 * 10 7 6 12 12 O 1.21278 * 119.99974 * 359.97438 * 11 10 7 13 13 C 1.50699 * 119.99756 * 180.02562 * 11 10 7 14 14 C 1.50703 * 109.46695 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.92998 * 269.71917 * 14 13 11 16 16 C 1.38104 * 120.06675 * 179.72714 * 15 14 13 17 17 C 1.38876 * 119.92925 * 0.57472 * 16 15 14 18 18 O 1.35753 * 120.06599 * 179.68464 * 17 16 15 19 19 C 1.34830 * 116.99892 * 178.56025 * 18 17 16 20 20 H 1.07998 * 120.00005 * 5.21975 * 19 18 17 21 21 C 1.38651 * 120.00021 * 185.21819 * 19 18 17 22 22 N 1.31558 * 119.99816 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00181 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47297 * 89.99693 * 23 21 19 25 25 H 1.48505 * 109.47295 * 209.99971 * 23 21 19 26 26 H 1.48508 * 109.46996 * 329.99668 * 23 21 19 27 27 C 1.38875 * 119.86431 * 359.69873 * 17 16 15 28 28 C 1.38102 * 119.93220 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47514 * 299.99988 * 1 2 3 31 31 H 1.09008 * 109.47316 * 60.00140 * 1 2 3 32 32 H 1.07999 * 119.99965 * 6.70470 * 5 3 2 33 33 H 1.08004 * 119.99646 * 197.57185 * 6 5 3 34 34 H 1.09001 * 109.46823 * 300.00281 * 9 7 6 35 35 H 1.09003 * 109.46851 * 60.00042 * 9 7 6 36 36 H 1.08994 * 109.46850 * 180.02562 * 9 7 6 37 37 H 0.97001 * 120.00377 * 25.00126 * 10 7 6 38 38 H 1.08998 * 109.46979 * 299.99318 * 13 11 10 39 39 H 1.08998 * 109.47442 * 59.99557 * 13 11 10 40 40 H 1.07996 * 119.96570 * 359.97438 * 15 14 13 41 41 H 1.07996 * 120.03376 * 180.27828 * 16 15 14 42 42 H 0.97001 * 120.00045 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.03764 * 179.97438 * 27 17 16 44 44 H 1.07998 * 119.96930 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5314 1.2780 -0.0006 6 6 4.1360 2.4559 0.1342 7 6 3.3726 3.6373 0.6750 8 1 2.3796 3.3153 0.9890 9 6 3.2423 4.7028 -0.4153 10 7 4.0897 4.1982 1.8227 11 6 3.4186 4.8930 2.7627 12 8 2.2212 5.0543 2.6580 13 6 4.1564 5.4705 3.9430 14 6 3.1839 6.1949 4.8377 15 6 2.9324 7.5400 4.6375 16 6 2.0375 8.2054 5.4522 17 6 1.3988 7.5251 6.4808 18 8 0.5235 8.1780 7.2873 19 6 -0.0837 7.4511 8.2469 20 1 0.1968 6.4198 8.4019 21 6 -1.0681 8.0277 9.0349 22 7 -1.6601 7.3187 9.9716 23 14 -1.5537 9.8114 8.7664 24 1 -2.6563 9.8802 7.7740 25 1 -2.0076 10.3998 10.0522 26 1 -0.3833 10.5722 8.2596 27 6 1.6578 6.1758 6.6828 28 6 2.5494 5.5146 5.8612 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.1193 0.3787 -0.1102 33 1 5.1738 2.5651 -0.1441 34 1 4.2352 5.0246 -0.7292 35 1 2.7087 4.2854 -1.2693 36 1 2.6905 5.5574 -0.0240 37 1 5.0475 4.0695 1.9063 38 1 4.6345 4.6658 4.5016 39 1 4.9153 6.1691 3.5908 40 1 3.4334 8.0697 3.8408 41 1 1.8382 9.2547 5.2925 42 1 -2.3485 7.7221 10.5231 43 1 1.1630 5.6441 7.4821 44 1 2.7515 4.4654 6.0180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347559919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:00 Heat of formation + Delta-G solvation = -92.797061 kcal Electronic energy + Delta-G solvation = -27389.788741 eV Core-core repulsion = 23274.329752 eV Total energy + Delta-G solvation = -4115.458989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86802 -39.83886 -38.94138 -37.40882 -36.62836 -35.76086 -33.19987 -32.45746 -31.62020 -30.19639 -30.04169 -28.14192 -26.82298 -25.03278 -24.48189 -22.49499 -22.02855 -20.90641 -20.47639 -19.70942 -18.18388 -17.82988 -17.32556 -17.09061 -16.78607 -16.54664 -15.70780 -15.27815 -14.87261 -14.63466 -14.26747 -14.04420 -13.89850 -13.76187 -13.64107 -13.60387 -13.35480 -13.33090 -12.96996 -12.61557 -12.42249 -12.35130 -12.17644 -12.06116 -11.79770 -11.56514 -11.24547 -11.07271 -10.87858 -10.70209 -10.62788 -10.38108 -10.10522 -10.01448 -9.60794 -9.32622 -9.10109 -8.81122 -8.16859 -7.24124 -6.36868 -4.03021 0.53667 2.21645 2.22521 2.43120 2.47361 2.81837 3.25135 3.28854 3.32359 3.44490 4.21499 4.28390 4.37535 4.53030 4.80655 4.82786 4.91495 4.92887 4.98539 5.04980 5.15641 5.18630 5.24192 5.29031 5.32025 5.48659 5.54794 5.63716 5.65149 5.72153 5.81458 5.85419 6.04896 6.19641 6.30564 6.39678 6.41969 6.63196 6.86163 7.08755 7.28681 7.37203 7.41070 7.48970 7.68334 7.86188 8.09537 8.37161 8.98761 9.61966 10.70955 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.002306 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.743856 B =12140.826748 C =13202.229601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.484 3.516 4 O -0.489 6.489 5 C -0.182 4.182 6 C -0.057 4.057 7 C 0.131 3.869 8 H 0.135 0.865 9 C -0.150 4.150 10 N -0.736 5.736 11 C 0.510 3.490 12 O -0.513 6.513 13 C -0.081 4.081 14 C -0.161 4.161 15 C -0.061 4.061 16 C -0.191 4.191 17 C 0.162 3.838 18 O -0.218 6.218 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.220 4.220 28 C -0.058 4.058 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.133 0.867 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.200 -12.996 -21.622 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.330 3.670 4 O -0.379 6.379 5 C -0.202 4.202 6 C -0.076 4.076 7 C 0.027 3.973 8 H 0.152 0.848 9 C -0.209 4.209 10 N -0.391 5.391 11 C 0.296 3.704 12 O -0.386 6.386 13 C -0.120 4.120 14 C -0.162 4.162 15 C -0.080 4.080 16 C -0.211 4.211 17 C 0.110 3.890 18 O -0.123 6.123 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.239 4.239 28 C -0.076 4.076 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.228 0.772 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.796 -12.343 -21.487 28.361 hybrid contribution 0.028 0.391 -0.015 0.392 sum 13.824 -11.952 -21.502 28.219 Atomic orbital electron populations 1.23310 0.75769 1.03809 1.02974 1.86571 1.23829 1.32770 1.84272 1.21725 0.90215 0.81559 0.73515 1.90833 1.67182 1.35174 1.44696 1.22021 0.90246 0.99473 1.08432 1.24059 1.00705 0.93194 0.89608 1.20829 0.98421 0.91174 0.86829 0.84806 1.21996 1.01563 0.99116 0.98181 1.46181 1.11495 1.57221 1.24157 1.21017 0.88299 0.77828 0.83231 1.90771 1.14747 1.56653 1.76445 1.20430 0.97654 1.00354 0.93603 1.18701 1.03825 0.94142 0.99569 1.20396 0.96725 0.93514 0.97345 1.20139 1.02596 1.00099 0.98221 1.19122 0.89603 0.90773 0.89524 1.83577 1.50313 1.37742 1.40668 1.20775 1.18508 0.97587 1.09511 0.87634 1.24464 0.94823 0.99877 0.94863 1.69650 1.25159 1.37107 1.20019 0.86181 0.79689 0.83405 0.77626 1.19893 1.20818 1.18350 1.21222 1.03664 0.94995 1.03991 1.20564 0.95030 0.98016 0.94022 0.87989 0.91471 0.91749 0.83409 0.84047 0.92851 0.91639 0.91428 0.77216 0.88908 0.88880 0.87209 0.86568 0.91109 0.84966 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.42 10.58 -40.76 -0.43 -3.85 16 3 C 0.48 5.04 7.69 34.26 0.26 5.31 16 4 O -0.49 -6.63 13.10 -19.29 -0.25 -6.88 16 5 C -0.18 -1.27 10.12 -37.85 -0.38 -1.65 16 6 C -0.06 -0.36 8.99 -36.10 -0.32 -0.69 16 7 C 0.13 1.36 2.18 -69.08 -0.15 1.21 16 8 H 0.13 1.95 4.30 -52.29 -0.23 1.72 16 9 C -0.15 -1.52 9.42 37.16 0.35 -1.17 16 10 N -0.74 -7.15 5.07 -54.93 -0.28 -7.43 16 11 C 0.51 7.09 7.79 -10.98 -0.09 7.01 16 12 O -0.51 -9.98 15.70 5.56 0.09 -9.89 16 13 C -0.08 -0.98 5.83 -29.03 -0.17 -1.15 16 14 C -0.16 -2.79 4.38 -104.57 -0.46 -3.24 16 15 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 16 C -0.19 -4.02 9.99 -39.39 -0.39 -4.42 16 17 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 18 O -0.22 -5.99 8.59 0.04 0.00 -5.99 16 19 C -0.39 -11.31 9.94 30.89 0.31 -11.00 16 20 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 21 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 22 N -0.88 -26.08 13.96 55.48 0.77 -25.30 16 23 Si 0.91 22.32 28.62 -169.99 -4.86 17.45 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 27 C -0.22 -5.01 9.17 -39.40 -0.36 -5.37 16 28 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.14 0.40 8.06 -52.48 -0.42 -0.03 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.39 2.29 8.59 -40.82 -0.35 1.93 16 38 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 42 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.13 3.15 5.62 -52.49 -0.30 2.86 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -36.57 382.08 -6.45 -43.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.78 Total: 4.56 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.46 Total: -11.44 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.50 Total: -32.73 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.60 Total: -26.61 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.86 Total: 17.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.57 -6.45 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347559919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.779 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds