Wall clock time and date at job start Tue Mar 31 2020 18:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34798 * 117.00218 * 2 1 4 4 O 1.21536 * 119.99769 * 0.02562 * 3 2 1 5 5 C 1.46952 * 120.00434 * 180.02562 * 3 2 1 6 6 C 1.33080 * 119.99795 * 186.71523 * 5 3 2 7 7 C 1.50697 * 120.00473 * 17.56613 * 6 5 3 8 8 H 1.09004 * 109.46818 * 5.48641 * 7 6 5 9 9 C 1.53003 * 109.47451 * 245.48139 * 7 6 5 10 10 N 1.46503 * 109.46845 * 125.48143 * 7 6 5 11 11 C 1.34782 * 119.99834 * 205.00424 * 10 7 6 12 12 O 1.21278 * 119.99974 * 359.97438 * 11 10 7 13 13 C 1.50699 * 119.99756 * 180.02562 * 11 10 7 14 14 C 1.50703 * 109.46695 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.92998 * 269.71917 * 14 13 11 16 16 C 1.38104 * 120.06675 * 179.72714 * 15 14 13 17 17 C 1.38876 * 119.92925 * 0.57472 * 16 15 14 18 18 O 1.35753 * 120.06599 * 179.68464 * 17 16 15 19 19 C 1.34830 * 116.99892 * 178.56025 * 18 17 16 20 20 H 1.07998 * 120.00005 * 5.21975 * 19 18 17 21 21 C 1.38651 * 120.00021 * 185.21819 * 19 18 17 22 22 N 1.31558 * 119.99816 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00181 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47297 * 89.99693 * 23 21 19 25 25 H 1.48505 * 109.47295 * 209.99971 * 23 21 19 26 26 H 1.48508 * 109.46996 * 329.99668 * 23 21 19 27 27 C 1.38875 * 119.86431 * 359.69873 * 17 16 15 28 28 C 1.38102 * 119.93220 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47514 * 299.99988 * 1 2 3 31 31 H 1.09008 * 109.47316 * 60.00140 * 1 2 3 32 32 H 1.07999 * 119.99965 * 6.70470 * 5 3 2 33 33 H 1.08004 * 119.99646 * 197.57185 * 6 5 3 34 34 H 1.09001 * 109.46823 * 300.00281 * 9 7 6 35 35 H 1.09003 * 109.46851 * 60.00042 * 9 7 6 36 36 H 1.08994 * 109.46850 * 180.02562 * 9 7 6 37 37 H 0.97001 * 120.00377 * 25.00126 * 10 7 6 38 38 H 1.08998 * 109.46979 * 299.99318 * 13 11 10 39 39 H 1.08998 * 109.47442 * 59.99557 * 13 11 10 40 40 H 1.07996 * 119.96570 * 359.97438 * 15 14 13 41 41 H 1.07996 * 120.03376 * 180.27828 * 16 15 14 42 42 H 0.97001 * 120.00045 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.03764 * 179.97438 * 27 17 16 44 44 H 1.07998 * 119.96930 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5314 1.2780 -0.0006 6 6 4.1360 2.4559 0.1342 7 6 3.3726 3.6373 0.6750 8 1 2.3796 3.3153 0.9890 9 6 3.2423 4.7028 -0.4153 10 7 4.0897 4.1982 1.8227 11 6 3.4186 4.8930 2.7627 12 8 2.2212 5.0543 2.6580 13 6 4.1564 5.4705 3.9430 14 6 3.1839 6.1949 4.8377 15 6 2.9324 7.5400 4.6375 16 6 2.0375 8.2054 5.4522 17 6 1.3988 7.5251 6.4808 18 8 0.5235 8.1780 7.2873 19 6 -0.0837 7.4511 8.2469 20 1 0.1968 6.4198 8.4019 21 6 -1.0681 8.0277 9.0349 22 7 -1.6601 7.3187 9.9716 23 14 -1.5537 9.8114 8.7664 24 1 -2.6563 9.8802 7.7740 25 1 -2.0076 10.3998 10.0522 26 1 -0.3833 10.5722 8.2596 27 6 1.6578 6.1758 6.6828 28 6 2.5494 5.5146 5.8612 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.1193 0.3787 -0.1102 33 1 5.1738 2.5651 -0.1441 34 1 4.2352 5.0246 -0.7292 35 1 2.7087 4.2854 -1.2693 36 1 2.6905 5.5574 -0.0240 37 1 5.0475 4.0695 1.9063 38 1 4.6345 4.6658 4.5016 39 1 4.9153 6.1691 3.5908 40 1 3.4334 8.0697 3.8408 41 1 1.8382 9.2547 5.2925 42 1 -2.3485 7.7221 10.5231 43 1 1.1630 5.6441 7.4821 44 1 2.7515 4.4654 6.0180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347559919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:59 Heat of formation + Delta-G solvation = -118.612135 kcal Electronic energy + Delta-G solvation = -27390.908167 eV Core-core repulsion = 23274.329752 eV Total energy + Delta-G solvation = -4116.578415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.65440 -41.11265 -40.48283 -38.52479 -37.96536 -36.70285 -34.53832 -34.02016 -32.94887 -31.81818 -31.00686 -28.79961 -28.35391 -26.81732 -25.31005 -23.72855 -23.38465 -22.22092 -21.48903 -20.61800 -19.82796 -19.15129 -18.88983 -18.08923 -17.68442 -17.36402 -16.78592 -16.53187 -16.20942 -16.09675 -15.69705 -15.55723 -15.33608 -14.98641 -14.83753 -14.44317 -14.37006 -14.34749 -14.22626 -14.08398 -14.03771 -13.64801 -13.11133 -13.05365 -12.87604 -12.77676 -12.54285 -12.49185 -12.40049 -12.31287 -11.93603 -11.83610 -11.29195 -11.14385 -10.98235 -10.84164 -10.48290 -10.01487 -9.79605 -8.98612 -8.52250 -6.24729 -0.05675 0.57721 0.61882 1.28347 1.33523 1.49790 1.71943 1.80916 1.81755 2.26425 2.39722 2.78598 3.06909 3.16034 3.58878 3.82468 3.85075 4.03025 4.14346 4.19296 4.24691 4.26095 4.28214 4.38018 4.48772 4.54704 4.57027 4.65018 4.70492 4.71502 4.81916 4.96215 4.97964 5.04594 5.14510 5.22298 5.24995 5.36692 5.52700 5.55732 5.64007 5.73269 5.78749 5.90170 6.24415 6.66226 6.70400 6.82043 7.43278 7.56900 8.59744 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.002306 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.743856 B =12140.826748 C =13202.229601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.532 6.532 5 C -0.185 4.185 6 C -0.040 4.040 7 C 0.123 3.877 8 H 0.091 0.909 9 C -0.144 4.144 10 N -0.710 5.710 11 C 0.509 3.491 12 O -0.581 6.581 13 C -0.077 4.077 14 C -0.138 4.138 15 C -0.059 4.059 16 C -0.195 4.195 17 C 0.117 3.883 18 O -0.246 6.246 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.972 3.028 24 H -0.269 1.269 25 H -0.263 1.263 26 H -0.262 1.262 27 C -0.240 4.240 28 C -0.066 4.066 29 H 0.133 0.867 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.128 0.872 42 H 0.285 0.715 43 H 0.105 0.895 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.534 -13.419 -24.572 34.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.424 6.424 5 C -0.205 4.205 6 C -0.058 4.058 7 C 0.019 3.981 8 H 0.108 0.892 9 C -0.202 4.202 10 N -0.365 5.365 11 C 0.296 3.704 12 O -0.460 6.460 13 C -0.116 4.116 14 C -0.139 4.139 15 C -0.077 4.077 16 C -0.214 4.214 17 C 0.068 3.932 18 O -0.153 6.153 19 C -0.477 4.477 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.794 3.206 24 H -0.194 1.194 25 H -0.187 1.187 26 H -0.186 1.186 27 C -0.259 4.259 28 C -0.084 4.084 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.202 0.798 33 H 0.211 0.789 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.258 0.742 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.146 0.854 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.228 -12.821 -24.479 33.104 hybrid contribution -1.105 0.323 0.634 1.314 sum 17.123 -12.498 -23.845 31.906 Atomic orbital electron populations 1.23475 0.75216 1.05583 1.02075 1.86575 1.24554 1.32651 1.83983 1.22629 0.91898 0.81065 0.72457 1.90843 1.68435 1.36397 1.46738 1.22356 0.88086 1.01248 1.08760 1.24247 1.02419 0.90717 0.88462 1.20713 0.97530 0.92890 0.86997 0.89175 1.21921 1.02810 0.97769 0.97743 1.45870 1.12601 1.55237 1.22790 1.21259 0.87472 0.77617 0.84021 1.90780 1.17681 1.59465 1.78039 1.20567 0.96761 1.02008 0.92274 1.19340 1.02263 0.94128 0.98139 1.20958 0.95467 0.94093 0.97176 1.20510 1.02529 1.00916 0.97410 1.19684 0.90583 0.91904 0.91004 1.83513 1.52293 1.37910 1.41626 1.20716 1.19311 0.96960 1.10723 0.90379 1.25305 0.94717 1.04327 0.94575 1.69732 1.26385 1.39054 1.21349 0.85204 0.79094 0.78006 0.78297 1.19389 1.18734 1.18584 1.21248 1.05128 0.94975 1.04557 1.20917 0.94212 0.99314 0.93970 0.84877 0.93205 0.91881 0.79761 0.78861 0.89509 0.92188 0.94844 0.74217 0.85365 0.84347 0.82813 0.85404 0.90524 0.87669 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.66 16 2 O -0.36 -6.73 10.58 -57.09 -0.60 -7.33 16 3 C 0.47 9.58 7.69 70.10 0.54 10.12 16 4 O -0.53 -15.03 13.10 19.72 0.26 -14.77 16 5 C -0.19 -1.97 10.12 23.40 0.24 -1.74 16 6 C -0.04 -0.34 8.99 24.53 0.22 -0.12 16 7 C 0.12 2.25 2.18 44.25 0.10 2.35 16 8 H 0.09 2.64 4.30 -8.20 -0.04 2.61 16 9 C -0.14 -2.65 9.42 71.98 0.68 -1.97 16 10 N -0.71 -10.87 5.07 -446.08 -2.26 -13.13 16 11 C 0.51 12.53 7.79 87.66 0.68 13.21 16 12 O -0.58 -22.32 15.70 -3.02 -0.05 -22.37 16 13 C -0.08 -1.47 5.83 29.10 0.17 -1.30 16 14 C -0.14 -4.36 4.38 -19.83 -0.09 -4.44 16 15 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 16 C -0.19 -8.11 9.99 22.39 0.22 -7.89 16 17 C 0.12 5.94 6.65 22.58 0.15 6.09 16 18 O -0.25 -14.25 8.59 -22.77 -0.20 -14.45 16 19 C -0.40 -24.99 9.94 67.92 0.68 -24.32 16 20 H 0.08 5.11 5.43 -2.91 -0.02 5.10 16 21 C 0.01 0.54 5.49 84.83 0.47 1.00 16 22 N -0.92 -57.40 13.96 21.61 0.30 -57.10 16 23 Si 0.97 47.59 28.62 68.60 1.96 49.55 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 27 C -0.24 -11.54 9.17 22.39 0.21 -11.33 16 28 C -0.07 -2.51 9.69 22.25 0.22 -2.29 16 29 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.19 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.19 -0.32 8.06 -2.91 -0.02 -0.35 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.42 2.25 8.59 -92.71 -0.80 1.45 16 38 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 39 H 0.14 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 41 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.29 16.17 8.31 -92.71 -0.77 15.40 16 43 H 0.11 5.53 5.62 -2.91 -0.02 5.52 16 44 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -90.83 382.08 5.52 -85.31 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.21 Total: 16.97 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 5.89 Total: -22.70 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.96 Total: -70.23 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -0.59 Total: -58.91 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.96 Total: 49.55 kcal Total: -90.83 5.52 -85.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347559919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.300 kcal (2) G-P(sol) polarization free energy of solvation -90.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds