Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34798 * 116.99834 * 2 1 4 4 O 1.21527 * 120.00469 * 0.02562 * 3 2 1 5 5 C 1.46955 * 119.99643 * 180.02562 * 3 2 1 6 6 C 1.33085 * 119.99685 * 180.02562 * 5 3 2 7 7 C 1.50704 * 120.00075 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.46729 * 4.99633 * 7 6 5 9 9 C 1.52999 * 109.47356 * 125.00052 * 7 6 5 10 10 N 1.46506 * 109.46851 * 245.00221 * 7 6 5 11 11 C 1.34777 * 119.99695 * 154.99973 * 10 7 6 12 12 O 1.21280 * 120.00073 * 0.27175 * 11 10 7 13 13 C 1.50697 * 119.99730 * 179.97438 * 11 10 7 14 14 C 1.50706 * 109.47036 * 179.97438 * 13 11 10 15 15 C 1.38294 * 119.93130 * 269.72914 * 14 13 11 16 16 C 1.38099 * 120.07055 * 179.72623 * 15 14 13 17 17 C 1.38885 * 119.92916 * 0.56465 * 16 15 14 18 18 O 1.35746 * 120.07221 * 179.68553 * 17 16 15 19 19 C 1.34828 * 117.00240 * 174.48968 * 18 17 16 20 20 H 1.08006 * 120.00054 * 5.05118 * 19 18 17 21 21 C 1.38655 * 120.00332 * 185.05591 * 19 18 17 22 22 N 1.31553 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47105 * 60.00000 * 23 21 19 25 25 H 1.48499 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47062 * 300.00069 * 23 21 19 27 27 C 1.38888 * 119.85809 * 359.70827 * 17 16 15 28 28 C 1.38097 * 119.93011 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46847 * 299.99328 * 1 2 3 30 30 H 1.08996 * 109.47162 * 59.99285 * 1 2 3 31 31 H 1.09002 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00663 * 0.02562 * 5 3 2 33 33 H 1.08003 * 120.00035 * 0.02562 * 6 5 3 34 34 H 1.08993 * 109.46808 * 179.97438 * 9 7 6 35 35 H 1.09002 * 109.47125 * 300.00158 * 9 7 6 36 36 H 1.09009 * 109.46681 * 60.00121 * 9 7 6 37 37 H 0.96998 * 119.99717 * 334.99868 * 10 7 6 38 38 H 1.08996 * 109.47419 * 299.99635 * 13 11 10 39 39 H 1.09002 * 109.47566 * 60.00041 * 13 11 10 40 40 H 1.08001 * 119.96614 * 359.97036 * 15 14 13 41 41 H 1.08000 * 120.04137 * 180.26759 * 16 15 14 42 42 H 0.97003 * 120.00423 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.03290 * 179.97438 * 27 17 16 44 44 H 1.07997 * 119.96090 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4021 2.2203 0.0005 5 6 3.5315 1.2779 -0.0006 6 6 4.1356 2.4638 -0.0001 7 6 5.6406 2.5427 -0.0012 8 1 6.0569 1.5394 -0.0919 9 6 6.1057 3.3966 -1.1825 10 7 6.0987 3.1501 1.2508 11 6 7.3365 2.8865 1.7143 12 8 8.0729 2.1505 1.0923 13 6 7.8079 3.5118 3.0018 14 6 9.2151 3.0585 3.2947 15 6 9.4302 1.9173 4.0456 16 6 10.7184 1.4962 4.3109 17 6 11.7985 2.2266 3.8327 18 8 13.0660 1.8189 4.0972 19 6 14.0656 2.5067 3.5092 20 1 13.8444 3.3894 2.9275 21 6 15.3774 2.0807 3.6511 22 7 15.6468 1.0057 4.3600 23 14 16.7622 3.0332 2.8359 24 1 16.7786 4.4244 3.3550 25 1 18.0593 2.3764 3.1377 26 1 16.5493 3.0556 1.3664 27 6 11.5791 3.3755 3.0837 28 6 10.2885 3.7876 2.8163 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.1198 0.3722 -0.0014 33 1 3.5474 3.3695 0.0012 34 1 7.1941 3.4540 -1.1830 35 1 5.7648 2.9447 -2.1140 36 1 5.6893 4.3999 -1.0916 37 1 5.5111 3.7419 1.7461 38 1 7.7879 4.5974 2.9073 39 1 7.1512 3.2058 3.8162 40 1 8.5899 1.3525 4.4215 41 1 10.8859 0.6025 4.8937 42 1 16.5645 0.7074 4.4591 43 1 12.4170 3.9459 2.7108 44 1 10.1173 4.6806 2.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347559922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = -109.237260 kcal Electronic energy + Delta-G solvation = -26578.826769 eV Core-core repulsion = 22462.654879 eV Total energy + Delta-G solvation = -4116.171890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.78107 -39.97884 -38.84306 -37.26254 -36.68517 -36.07165 -33.25137 -32.43497 -31.51496 -30.21754 -30.08117 -28.29135 -26.65126 -25.21264 -24.73629 -22.24920 -21.92985 -20.93906 -20.51307 -19.77326 -18.33794 -17.94147 -17.29149 -17.02876 -16.82005 -16.75993 -16.12285 -15.36544 -14.61224 -14.49563 -14.40054 -14.33481 -14.18985 -13.78380 -13.72614 -13.54515 -13.38671 -13.06944 -12.88032 -12.66494 -12.50049 -12.41039 -12.30528 -11.82867 -11.55063 -11.43402 -11.26434 -11.22619 -11.05238 -10.81694 -10.72791 -10.60811 -10.40844 -10.34977 -9.69645 -9.30411 -9.28371 -8.78221 -8.11203 -7.12675 -6.40989 -3.99625 0.50890 2.22150 2.28953 2.31077 2.44925 2.72895 3.15076 3.16265 3.19642 3.25139 4.00272 4.08711 4.44718 4.54879 4.60574 4.66488 4.73188 4.81629 4.92029 5.03998 5.06958 5.12095 5.27918 5.28245 5.35675 5.39114 5.50834 5.61996 5.68466 5.75984 5.78453 5.88371 5.89060 5.95133 6.25513 6.26869 6.45711 6.74119 6.95325 7.08991 7.26732 7.27368 7.38442 7.40699 7.49032 7.87911 8.04116 8.26833 9.04591 9.75281 10.77048 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.001744 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.695381 B =16053.814930 C =16357.770037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.496 3.504 4 O -0.512 6.512 5 C -0.176 4.176 6 C -0.059 4.059 7 C 0.164 3.836 8 H 0.100 0.900 9 C -0.162 4.162 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.516 6.516 13 C -0.079 4.079 14 C -0.171 4.171 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.233 4.233 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.982 3.541 -8.030 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.342 3.658 4 O -0.402 6.402 5 C -0.196 4.196 6 C -0.078 4.078 7 C 0.060 3.940 8 H 0.118 0.882 9 C -0.220 4.220 10 N -0.390 5.390 11 C 0.299 3.701 12 O -0.389 6.389 13 C -0.119 4.119 14 C -0.173 4.173 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.323 2.944 -8.271 27.748 hybrid contribution 0.074 0.810 -0.303 0.868 sum -26.248 3.754 -8.574 27.867 Atomic orbital electron populations 1.23303 0.75891 1.03931 1.02658 1.86609 1.23710 1.32641 1.84099 1.21563 0.90104 0.81422 0.72701 1.90862 1.67266 1.36050 1.45989 1.22043 0.89995 1.00285 1.07264 1.24022 0.96227 0.98209 0.89373 1.20013 0.88811 0.99691 0.85486 0.88204 1.22166 1.03063 0.99847 0.96964 1.46152 1.16656 1.51362 1.24828 1.21119 0.80505 0.81196 0.87276 1.90756 1.53731 1.35757 1.58652 1.20408 0.96066 1.01055 0.94344 1.18620 0.92150 0.99652 1.06835 1.20397 0.95426 0.94873 0.97087 1.20156 0.90664 1.02213 1.08056 1.19388 0.86353 0.91918 0.92054 1.83973 1.10050 1.52834 1.61293 1.21281 0.84432 1.09440 1.31628 0.89139 1.25279 0.97584 0.96587 0.97052 1.70029 1.20527 1.22165 1.37108 0.85788 0.79232 0.79060 0.79384 1.19529 1.20299 1.19520 1.21105 0.97081 1.00053 1.06963 1.20500 0.92027 0.97943 0.96957 0.91749 0.91775 0.87858 0.83765 0.84747 0.90852 0.91391 0.92017 0.76608 0.88901 0.88906 0.87389 0.86556 0.92016 0.85610 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.95 10.58 -40.76 -0.43 -3.39 16 3 C 0.50 4.51 7.91 34.26 0.27 4.79 16 4 O -0.51 -5.78 16.01 -19.28 -0.31 -6.09 16 5 C -0.18 -1.29 9.76 -37.84 -0.37 -1.66 16 6 C -0.06 -0.40 8.54 -36.10 -0.31 -0.71 16 7 C 0.16 1.35 2.94 -69.08 -0.20 1.14 16 8 H 0.10 0.98 7.26 -51.93 -0.38 0.60 16 9 C -0.16 -1.28 9.47 37.16 0.35 -0.93 16 10 N -0.74 -6.34 5.07 -54.93 -0.28 -6.61 16 11 C 0.51 6.51 7.79 -10.99 -0.09 6.43 16 12 O -0.52 -9.11 15.70 5.56 0.09 -9.02 16 13 C -0.08 -0.93 5.83 -29.03 -0.17 -1.10 16 14 C -0.17 -2.93 4.38 -104.58 -0.46 -3.39 16 15 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 16 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 17 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 18 O -0.18 -5.20 9.76 0.06 0.00 -5.20 16 19 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 20 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 23 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.23 -5.21 9.17 -39.39 -0.36 -5.58 16 28 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.14 0.90 7.87 -52.49 -0.41 0.49 16 33 H 0.13 0.86 7.49 -52.48 -0.39 0.46 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.40 2.28 8.59 -40.82 -0.35 1.93 16 38 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 44 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -36.10 388.55 -6.71 -42.81 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.88 Total: 4.21 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.49 Total: -13.46 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.48 Total: -31.51 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.65 Total: -23.70 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.10 -6.71 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347559922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.426 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds